Thymidine (BioDeep_00000398589)

Main id: BioDeep_00000000073

 

natural product PANOMIX_OTCML-2023 BioNovoGene_Lab2019


代谢物信息卡片


Thymidine

化学式: C10H14N2O5 (242.0903)
中文名称: β-胸苷, 胸苷
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)O
InChI: InChI=1S/C10H14N2O5/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)

描述信息

relative retention time with respect to 9-anthracene Carboxylic Acid is 0.220
relative retention time with respect to 9-anthracene Carboxylic Acid is 0.211
relative retention time with respect to 9-anthracene Carboxylic Acid is 0.213
Thymidine, a specific precursor of deoxyribonucleic acid, is used as a cell synchronizing agent. Thymidine is a DNA synthesis inhibitor that can arrest cell at G1/S boundary, prior to DNA replication[1][2][3].
Thymidine, a specific precursor of deoxyribonucleic acid, is used as a cell synchronizing agent. Thymidine is a DNA synthesis inhibitor that can arrest cell at G1/S boundary, prior to DNA replication[1][2][3].

同义名列表

5 个代谢物同义名

Thymidine; DThyd; NSC 21548; Thymidine; Thymidine



数据库引用编号

52 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(2)

BioCyc(7)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

204 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 10 ALB, ANG, CAT, CDKN1A, DHFR, EDN1, ODC1, PRKX, TK2, TYMS
Endoplasmic reticulum membrane 1 CD4
Nucleus 6 ALB, ANG, CDKN1A, PCNA, PRKX, TYMS
cytosol 9 ALB, ANG, CAT, CDKN1A, DHFR, ODC1, PRKCQ, TYMP, TYMS
nuclear body 2 CDKN1A, PCNA
centrosome 2 ALB, PCNA
nucleoplasm 3 CDKN1A, PCNA, PRKX
Cell membrane 2 CD4, TNF
cell surface 1 TNF
Golgi apparatus 1 ALB
Golgi membrane 1 INS
growth cone 1 ANG
lysosomal membrane 1 EGF
mitochondrial inner membrane 1 TYMS
neuronal cell body 2 ANG, TNF
plasma membrane 5 CD4, EGF, IFNLR1, PRKCQ, TNF
Membrane 3 CAT, EGF, IFNLR1
extracellular exosome 4 ALB, CAT, EGF, PCNA
endoplasmic reticulum 1 ALB
extracellular space 8 ALB, ANG, EDN1, EGF, IGF1, IL2, INS, TNF
perinuclear region of cytoplasm 1 CDKN1A
mitochondrion 4 CAT, DHFR, TK2, TYMS
protein-containing complex 3 ALB, CAT, CDKN1A
intracellular membrane-bounded organelle 1 CAT
Single-pass type I membrane protein 2 CD4, IFNLR1
Secreted 6 ALB, ANG, EDN1, IGF1, IL2, INS
extracellular region 9 ALB, ANG, CAT, EDN1, EGF, IGF1, IL2, INS, TNF
basal part of cell 1 EDN1
Mitochondrion matrix 1 TYMS
mitochondrial matrix 3 CAT, TK2, TYMS
anchoring junction 1 ALB
centriolar satellite 1 PRKCQ
external side of plasma membrane 2 CD4, TNF
actin cytoskeleton 1 ANG
nucleolus 2 ANG, CDKN1A
Early endosome 1 CD4
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Mitochondrion inner membrane 1 TYMS
Membrane raft 2 CD4, TNF
focal adhesion 1 CAT
Peroxisome 1 CAT
basement membrane 1 ANG
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
ciliary basal body 1 ALB
chromatin 1 PCNA
phagocytic cup 1 TNF
Chromosome 1 ANG
centriole 1 ALB
Nucleus, nucleolus 1 ANG
spindle pole 1 ALB
nuclear replication fork 1 PCNA
chromosome, telomeric region 1 PCNA
blood microparticle 1 ALB
endosome lumen 1 INS
Cytoplasm, Stress granule 1 ANG
cytoplasmic stress granule 1 ANG
replication fork 1 PCNA
exocytic vesicle 1 IGF1
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 2 CAT, INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 3 ALB, CD4, INS
male germ cell nucleus 1 PCNA
platelet alpha granule lumen 3 ALB, EGF, IGF1
endocytic vesicle 1 ANG
transport vesicle 2 EDN1, INS
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
immunological synapse 1 PRKCQ
aggresome 1 PRKCQ
nuclear lamina 1 PCNA
clathrin-coated endocytic vesicle membrane 2 CD4, EGF
cyclin-dependent protein kinase holoenzyme complex 2 CDKN1A, PCNA
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
T cell receptor complex 1 CD4
angiogenin-PRI complex 1 ANG
rough endoplasmic reticulum lumen 1 EDN1
catalase complex 1 CAT
Weibel-Palade body 1 EDN1
alphav-beta3 integrin-IGF-1-IGF1R complex 1 IGF1
insulin-like growth factor binding protein complex 1 IGF1
insulin-like growth factor ternary complex 1 IGF1
PCNA complex 1 PCNA
PCNA-p21 complex 2 CDKN1A, PCNA
replisome 1 PCNA
ciliary transition fiber 1 ALB
interleukin-28 receptor complex 1 IFNLR1
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Naoki Fukui, Takuya Fujiwara, Masakazu Furuta, Satoshi Takatori. [Detection of Gamma-Ray Irradiation History of Dried Plant-Based Foods via the Analysis of 5,6-Dihydrothymidine]. Shokuhin eiseigaku zasshi. Journal of the Food Hygienic Society of Japan. 2023; 64(6):206-213. doi: 10.3358/shokueishi.64.206. [PMID: 38171890]
  • Fan Yang, Xiaoqiang Shi, Weidong Yang, Chao Gao, Zhenyu Cui, Wentao Wang. Pueraria montana (Kudzu vine) Ameliorate the Inflammation and Oxidative Stress against Fe-NTA Induced Renal Cancer. Journal of oleo science. 2022 Sep; 71(10):1481-1492. doi: 10.5650/jos.ess22151. [PMID: 36089399]
  • Markus Niehaus, Henryk Straube, André Specht, Chiara Baccolini, Claus-Peter Witte, Marco Herde. The nucleotide metabolome of germinating Arabidopsis thaliana seeds reveals a central role for thymidine phosphorylation in chloroplast development. The Plant cell. 2022 09; 34(10):3790-3813. doi: 10.1093/plcell/koac207. [PMID: 35861422]
  • Mohammed Anowar Hosen, Nasrin Sultana Munia, Mohammed Al-Ghorbani, Mohammed Baashen, Faisal A Almalki, Taibi Ben Hadda, Ferdausi Ali, Shafi Mahmud, Md Abu Saleh, Hamid Laaroussi, Sarkar M A Kawsar. Synthesis, antimicrobial, molecular docking and molecular dynamics studies of lauroyl thymidine analogs against SARS-CoV-2: POM study and identification of the pharmacophore sites. Bioorganic chemistry. 2022 08; 125(?):105850. doi: 10.1016/j.bioorg.2022.105850. [PMID: 35533581]
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  • Julie Høgh, Malene Hove-Skovsgaard, Marco Gelpi, Anne Marie Reimer Jensen, Jan Gerstoft, Thomas Benfield, Heidi Storgaard, Susanne Dam Nielsen. Insulin resistance in people living with HIV is associated with exposure to thymidine analogues and/or didanosine and prior immunodeficiency. BMC infectious diseases. 2022 May; 22(1):503. doi: 10.1186/s12879-022-07485-1. [PMID: 35643429]
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