Zingiberene (BioDeep_00000860053)

Main id: BioDeep_00000000721

 

PANOMIX_OTCML-2023 natural product


代谢物信息卡片


(S-(R*,S*))-5-(1,5-Dimethylhexen-4-yl)-2-methyl-1,3-cyclohexa-1,3-diene

化学式: C15H24 (204.1878)
中文名称: α-姜烯, 姜烯
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC(C)=CCC[C@H](C)[C@@H]1C=CC(C)=CC1
InChI: InChI=1S/C15H24/c1-12(2)6-5-7-14(4)15-10-8-13(3)9-11-15/h6,8-10,14-15H,5,7,11H2,1-4H3/t14-,15+/m0/s1

描述信息

Zingiberene is 2-Methylcyclohexa-1,3-diene in which a hydrogen at the 5 position is substituted (R configuration) by a 6-methyl-hept-5-en-2-yl group (S configuration). It is a sesquiterpene found in the dried rhizomes of Indonesian ginger, Zingiber officinale. It is a sesquiterpene and a cyclohexadiene. It is an enantiomer of an ent-zingiberene.
Zingiberene is a natural product found in Chaerophyllum azoricum, Helichrysum odoratissimum, and other organisms with data available.

同义名列表

26 个代谢物同义名

(S-(R*,S*))-5-(1,5-Dimethylhexen-4-yl)-2-methyl-1,3-cyclohexa-1,3-diene; 1,3-CYCLOHEXADIENE, 5-((1S)-1,5-DIMETHYL-4-HEXEN-1-YL)-2-METHYL-, (5R)-; [S-(R*,S*)]-5-(1,5-dimethylhexen-4-yl)-2-methyl-1,3-cyclohexa-1,3-diene; 1,3-Cyclohexadiene, 5-[(1S)-1,5-dimethyl-4-hexenyl]-2-methyl-, (5R)-; (5R)-2-methyl-5-[(2S)-6-methylhept-5-en-2-yl]cyclohexa-1,3-diene; (5R)-5-[(1S)-1,5-dimethyl-4-hexenyl]-2-methyl-1,3-cyclohexadiene; (5r)-2-methyl-5-[(2s)-6-methylhept-5-en-2yl] cyclohexa-1,3-diene; (R)-2-Methyl-5-((S)-6-methylhept-5-en-2-yl)cyclohexa-1,3-diene; (-)-Zingiberene; l-Zingiberene; -Zingiberene; .alpha.-Sesquiphellandrene; Zingiberene from ginger; (-)-alpha-zingiberene; UNII-8XOC63EI5F; (-)-Zingiberene; Zingiberene; 8XOC63EI5F; 1,3-Cyclohexadiene, 5-(1,5-dimethyl-4-hexenyl)-2-methyl-, (S-(R*,S*))-; (5R)-5-[(1S)-1,5-dimethylhex-4-enyl]-2-methyl-cyclohexa-1,3-diene; (5R)-5-[(1S)-1,5-dimethylhex-4-enyl]-2-methylcyclohexa-1,3-diene; alpha-zingiberene; EINECS 207-804-2; LMPR01030039; 495-60-3; C09750; Zingiberene; alpha-Zingiberene



数据库引用编号

15 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

161 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 16 ACE2, BCL2, CASP2, CCNB1, DCTN4, GLA, HDAC1, HDAC2, HDAC6, HDAC8, HDAC9, MME, MTOR, PIK3CA, PTGS2, TYR
Peripheral membrane protein 4 ACHE, CYP1B1, MTOR, PTGS2
Endoplasmic reticulum membrane 5 BCL2, CYP1B1, GLA, MTOR, PTGS2
Nucleus 11 ACHE, BCL2, CASP2, CCNB1, DCTN4, HDAC1, HDAC2, HDAC6, HDAC8, HDAC9, MTOR
cytosol 8 BCL2, CASP2, CCNB1, DCTN4, HDAC1, HDAC6, MTOR, PIK3CA
dendrite 3 HDAC6, MME, MTOR
phagocytic vesicle 1 MTOR
trans-Golgi network 1 MME
centrosome 3 CCNB1, DCTN4, HDAC6
nucleoplasm 7 CCNB1, HDAC1, HDAC2, HDAC6, HDAC8, HDAC9, MTOR
Cell membrane 4 ACE2, ACHE, MME, TNF
Cytoplasmic side 1 MTOR
lamellipodium 1 PIK3CA
Cell projection, axon 1 HDAC6
Golgi apparatus membrane 1 MTOR
Synapse 2 ACHE, MME
cell cortex 1 DCTN4
cell surface 4 ACE2, ACHE, MME, TNF
Golgi apparatus 2 ACHE, GLA
Golgi membrane 1 MTOR
lysosomal membrane 1 MTOR
neuromuscular junction 1 ACHE
neuronal cell body 3 HDAC1, MME, TNF
synaptic vesicle 1 MME
Lysosome 3 GLA, MTOR, TYR
Presynapse 1 MME
plasma membrane 5 ACE2, ACHE, MME, PIK3CA, TNF
Membrane 9 ACE2, ACHE, BCL2, CCNB1, CYP1B1, GLA, HDAC2, MME, MTOR
apical plasma membrane 1 ACE2
axon 2 HDAC6, MME
brush border 1 MME
caveola 2 HDAC6, PTGS2
extracellular exosome 3 ACE2, GLA, MME
Lysosome membrane 1 MTOR
endoplasmic reticulum 2 BCL2, PTGS2
extracellular space 4 ACE2, ACHE, IL6, TNF
lysosomal lumen 1 GLA
perinuclear region of cytoplasm 4 ACHE, HDAC6, PIK3CA, TYR
intercalated disc 1 PIK3CA
mitochondrion 2 BCL2, CYP1B1
protein-containing complex 4 BCL2, HDAC1, HDAC2, PTGS2
intracellular membrane-bounded organelle 2 CYP1B1, TYR
Microsome membrane 3 CYP1B1, MTOR, PTGS2
ESC/E(Z) complex 1 HDAC2
TORC1 complex 1 MTOR
TORC2 complex 1 MTOR
Single-pass type I membrane protein 2 ACE2, TYR
Secreted 3 ACE2, ACHE, IL6
extracellular region 5 ACE2, ACHE, GLA, IL6, TNF
Mitochondrion outer membrane 2 BCL2, MTOR
Single-pass membrane protein 1 BCL2
mitochondrial outer membrane 2 BCL2, MTOR
mitochondrial matrix 1 CCNB1
Extracellular side 1 ACHE
transcription regulator complex 1 HDAC9
Cell projection, cilium 2 ACE2, HDAC6
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 2 DCTN4, HDAC6
Nucleus membrane 1 BCL2
Bcl-2 family protein complex 1 BCL2
nuclear membrane 1 BCL2
external side of plasma membrane 1 TNF
multivesicular body 1 HDAC6
perikaryon 1 HDAC6
cytoplasmic vesicle 1 MME
nucleolus 1 CASP2
axon cytoplasm 1 HDAC6
Melanosome membrane 1 TYR
Early endosome 1 MME
Golgi-associated vesicle 1 TYR
recycling endosome 1 TNF
Single-pass type II membrane protein 2 MME, TNF
Apical cell membrane 1 ACE2
heterochromatin 1 HDAC1
Membrane raft 3 ACE2, MME, TNF
pore complex 1 BCL2
Cytoplasm, cytoskeleton 2 DCTN4, HDAC6
focal adhesion 2 DCTN4, MME
microtubule 1 HDAC6
basement membrane 1 ACHE
Nucleus, PML body 1 MTOR
PML body 1 MTOR
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 1 PTGS2
nuclear outer membrane 1 PTGS2
Cytoplasm, myofibril, sarcomere 1 DCTN4
sarcomere 1 DCTN4
neuron projection 1 PTGS2
ciliary basal body 1 HDAC6
cilium 1 ACE2
chromatin 2 HDAC1, HDAC2
cell leading edge 1 HDAC6
microtubule associated complex 1 HDAC6
phagocytic cup 1 TNF
Chromosome 1 HDAC8
Cytoplasm, cytoskeleton, cilium basal body 1 HDAC6
brush border membrane 1 ACE2
spindle pole 2 CCNB1, DCTN4
chromosome, telomeric region 1 HDAC2
nuclear chromosome 1 HDAC8
Cytoplasm, cell cortex 1 DCTN4
Lipid-anchor, GPI-anchor 1 ACHE
nuclear envelope 1 MTOR
Endomembrane system 1 MTOR
Cell projection, dendrite 1 HDAC6
Melanosome 1 TYR
side of membrane 1 ACHE
myelin sheath 1 BCL2
stress fiber 1 DCTN4
secretory granule membrane 1 MME
endoplasmic reticulum lumen 3 ACE2, IL6, PTGS2
histone methyltransferase complex 1 HDAC9
transcription repressor complex 1 HDAC1
phosphatidylinositol 3-kinase complex 1 PIK3CA
phosphatidylinositol 3-kinase complex, class IA 1 PIK3CA
dynactin complex 1 DCTN4
kinetochore 1 DCTN4
endocytic vesicle membrane 1 ACE2
histone deacetylase complex 5 HDAC1, HDAC2, HDAC6, HDAC8, HDAC9
azurophil granule lumen 1 GLA
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 GLA
NuRD complex 2 HDAC1, HDAC2
cytoplasmic dynein complex 1 DCTN4
aggresome 1 HDAC6
outer kinetochore 1 CCNB1
Cytoplasm, cytoskeleton, stress fiber 1 DCTN4
endoplasmic reticulum-Golgi intermediate compartment 1 GLA
synaptic cleft 1 ACHE
Sin3-type complex 2 HDAC1, HDAC2
Cytoplasmic vesicle, phagosome 1 MTOR
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
inclusion body 1 HDAC6
interleukin-6 receptor complex 1 IL6
cyclin B1-CDK1 complex 1 CCNB1
neuron projection terminus 1 MME
BAD-BCL-2 complex 1 BCL2
[Isoform H]: Cell membrane 1 ACHE
phosphatidylinositol 3-kinase complex, class IB 1 PIK3CA
endopeptidase complex 1 CASP2
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
[Processed angiotensin-converting enzyme 2]: Secreted 1 ACE2
[Isoform 2]: Apical cell membrane 1 ACE2


文献列表

  • Bruno Antonio Ferreira, Ricardo Ferreira Silva, Francyelle Borges Rosa de Moura, Carolina Tannús Narduchi, Simone Ramos Deconte, Patricia Sartorelli, Tatiana Carla Tomiosso, João Henrique Ghilardi Lago, Fernanda de Assis Araújo. α-zingiberene, a sesquiterpene from essential oil from leaves of Casearia sylvestris, suppresses inflammatory angiogenesis and stimulates collagen deposition in subcutaneous implants in mice. Natural product research. 2022 Nov; 36(22):5858-5862. doi: 10.1080/14786419.2021.2019729. [PMID: 34961386]
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