Gardoside (BioDeep_00000001030)

   

PANOMIX_OTCML-2023 natural product


代谢物信息卡片


(1S,4aS,6S,7aS)-6-hydroxy-7-methylidene-1-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4a,5,6,7a-tetrahydro-1H-cyclopenta[c]pyran-4-carboxylic acid

化学式: C16H22O10 (374.1213)
中文名称: 栀子新苷
谱图信息: 最多检出来源 Chinese Herbal Medicine(otcml) 90%

分子结构信息

SMILES: C=C1C(CC2C1C(OC=C2C(=O)O)OC3C(C(C(C(O3)CO)O)O)O)O
InChI: InChI=1S/C16H22O10/c1-5-8(18)2-6-7(14(22)23)4-24-15(10(5)6)26-16-13(21)12(20)11(19)9(3-17)25-16/h4,6,8-13,15-21H,1-3H2,(H,22,23)/t6-,8+,9-,10-,11-,12+,13-,15+,16+/m1/s1



数据库引用编号

13 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

77 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 15 AKT1, BCL2, BCL2L1, CNR1, CTNNB1, ESR1, HIF1A, MAPK1, MAPT, PCSK9, PIK3C3, PRKCA, PRKCB, PRKCD, SIRT1
Peripheral membrane protein 5 ESR1, MAPT, PRKCA, PRKCB, PRKCD
Endoplasmic reticulum membrane 1 BCL2
Mitochondrion membrane 2 BCL2L1, PRKCA
Cytoplasmic vesicle, autophagosome 1 PIK3C3
Nucleus 11 AKT1, BCL2, CTNNB1, ESR1, HIF1A, MAPK1, MAPT, PRKCA, PRKCB, PRKCD, SIRT1
autophagosome 1 PIK3C3
cytosol 13 AKT1, BCL2, BCL2L1, CTNNB1, ESR1, HIF1A, MAPK1, MAPT, PIK3C3, PRKCA, PRKCB, PRKCD, SIRT1
dendrite 3 DRD2, MAPT, OPRM1
mitochondrial membrane 1 PRKCA
nuclear body 1 HIF1A
phosphatidylinositol 3-kinase complex, class III 1 PIK3C3
centrosome 4 BCL2L1, CTNNB1, MAPK1, PRKCB
nucleoplasm 9 AKT1, CTNNB1, ESR1, HIF1A, MAPK1, PRKCA, PRKCB, PRKCD, SIRT1
RNA polymerase II transcription regulator complex 1 HIF1A
Cell membrane 10 AKT1, CNR1, CTNNB1, DRD2, ESR1, MAPT, OPRM1, PRKCA, PRKCD, TNF
Cytoplasmic side 3 BCL2L1, ESR1, MAPT
lamellipodium 2 AKT1, CTNNB1
Cell projection, axon 3 CNR1, MAPT, OPRM1
Multi-pass membrane protein 3 CNR1, DRD2, OPRM1
Golgi apparatus membrane 1 DRD2
Synapse 5 CTNNB1, DRD2, MAPK1, OPRM1, PRKCD
cell cortex 2 AKT1, CTNNB1
cell junction 1 CTNNB1
cell surface 2 PCSK9, TNF
glutamatergic synapse 5 AKT1, CNR1, CTNNB1, DRD2, PIK3C3
Golgi apparatus 4 ESR1, MAPK1, OPRM1, PCSK9
Golgi membrane 1 DRD2
growth cone 2 CNR1, MAPT
lysosomal membrane 1 PCSK9
mitochondrial inner membrane 1 BCL2L1
neuronal cell body 2 MAPT, TNF
postsynapse 1 AKT1
presynaptic membrane 3 CNR1, CTNNB1, DRD2
Cytoplasm, cytosol 2 BCL2L1, MAPT
Lysosome 1 PCSK9
Presynapse 1 CNR1
acrosomal vesicle 1 DRD2
endosome 3 OPRM1, PCSK9, PIK3C3
plasma membrane 13 AKT1, CNR1, CTNNB1, DRD2, ESR1, MAPK1, MAPT, OPRM1, PCSK9, PRKCA, PRKCB, PRKCD, TNF
synaptic vesicle membrane 2 BCL2L1, DRD2
Membrane 9 AKT1, BCL2, CTNNB1, ESR1, OPRM1, PIK3C3, PRKCA, PRKCB, PRKCD
axon 4 CNR1, DRD2, MAPT, OPRM1
basolateral plasma membrane 1 CTNNB1
caveola 1 MAPK1
extracellular exosome 4 CTNNB1, PRKCA, PRKCB, PRKCD
endoplasmic reticulum 6 BCL2, BCL2L1, OPRM1, PCSK9, PRKCA, PRKCD
extracellular space 4 CXCL8, IL6, PCSK9, TNF
perinuclear region of cytoplasm 4 CTNNB1, PCSK9, PRKCA, PRKCD
Schaffer collateral - CA1 synapse 1 CTNNB1
adherens junction 1 CTNNB1
apicolateral plasma membrane 1 CTNNB1
bicellular tight junction 1 CTNNB1
mitochondrion 7 BCL2, BCL2L1, MAPK1, MAPT, PRKCA, PRKCD, SIRT1
protein-containing complex 5 AKT1, BCL2, CTNNB1, ESR1, HIF1A
chromatin silencing complex 1 SIRT1
Secreted 4 CXCL8, IL6, MAPT, PCSK9
extracellular region 7 CXCL8, IL6, MAPK1, MAPT, PCSK9, PRKCD, TNF
Mitochondrion outer membrane 3 BCL2, BCL2L1, CNR1
Single-pass membrane protein 2 BCL2, BCL2L1
mitochondrial outer membrane 3 BCL2, BCL2L1, CNR1
Mitochondrion matrix 1 BCL2L1
mitochondrial matrix 1 BCL2L1
transcription regulator complex 2 CTNNB1, ESR1
ciliary membrane 1 DRD2
motile cilium 1 HIF1A
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 2 BCL2L1, MAPK1
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 BCL2L1
Nucleus membrane 2 BCL2, BCL2L1
Bcl-2 family protein complex 2 BCL2, BCL2L1
nuclear membrane 2 BCL2, BCL2L1
external side of plasma membrane 1 TNF
actin cytoskeleton 1 CNR1
dendritic spine 2 DRD2, MAPT
perikaryon 2 DRD2, OPRM1
Z disc 1 CTNNB1
beta-catenin destruction complex 1 CTNNB1
microtubule cytoskeleton 2 AKT1, MAPT
nucleolus 1 SIRT1
Wnt signalosome 1 CTNNB1
axon cytoplasm 2 HIF1A, MAPT
midbody 1 PIK3C3
Early endosome 2 MAPK1, PCSK9
apical part of cell 1 CTNNB1
cell-cell junction 3 AKT1, CTNNB1, PRKCD
COPII-coated ER to Golgi transport vesicle 1 PCSK9
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
vesicle 1 AKT1
postsynaptic membrane 2 CTNNB1, DRD2
Cytoplasm, perinuclear region 1 PRKCD
heterochromatin 1 SIRT1
Membrane raft 3 CNR1, MAPT, TNF
pore complex 1 BCL2
Cell junction, focal adhesion 1 MAPK1
Cytoplasm, cytoskeleton 2 CTNNB1, MAPT
Cytoplasm, cytoskeleton, spindle 1 MAPK1
focal adhesion 2 CTNNB1, MAPK1
microtubule 1 MAPT
spindle 2 AKT1, MAPK1
axolemma 1 MAPT
GABA-ergic synapse 3 CNR1, DRD2, PIK3C3
Cell junction, adherens junction 1 CTNNB1
flotillin complex 1 CTNNB1
Peroxisome 1 PIK3C3
Nucleus, PML body 1 SIRT1
PML body 1 SIRT1
Mitochondrion intermembrane space 1 AKT1
mitochondrial intermembrane space 1 AKT1
fascia adherens 1 CTNNB1
lateral plasma membrane 2 CTNNB1, DRD2
axoneme 1 PIK3C3
nuclear speck 2 HIF1A, MAPT
nuclear inner membrane 1 SIRT1
Late endosome 3 MAPK1, PCSK9, PIK3C3
neuron projection 3 MAPT, OPRM1, PRKCD
ciliary basal body 2 AKT1, PRKCA
cilium 1 DRD2
chromatin 3 ESR1, HIF1A, SIRT1
phagocytic cup 1 TNF
phagocytic vesicle membrane 1 PIK3C3
cell periphery 1 CTNNB1
mitotic spindle 1 MAPK1
cytoskeleton 1 MAPK1
Cytoplasm, cytoskeleton, cilium basal body 1 CTNNB1
cytoplasmic ribonucleoprotein granule 1 MAPT
brush border membrane 1 PRKCB
spindle pole 1 CTNNB1
non-motile cilium 1 DRD2
postsynaptic density, intracellular component 1 CTNNB1
microvillus membrane 1 CTNNB1
sperm flagellum 1 DRD2
fibrillar center 1 SIRT1
nuclear envelope 1 SIRT1
Endomembrane system 2 CTNNB1, PRKCD
Membrane, caveola 1 MAPK1
phagophore assembly site 1 PIK3C3
phosphatidylinositol 3-kinase complex, class III, type I 1 PIK3C3
phosphatidylinositol 3-kinase complex, class III, type II 1 PIK3C3
Cell projection, dendrite 2 MAPT, OPRM1
Nucleus speckle 1 HIF1A
euchromatin 4 CTNNB1, ESR1, HIF1A, SIRT1
cell body 1 MAPT
myelin sheath 1 BCL2
pseudopodium 1 MAPK1
ficolin-1-rich granule lumen 1 MAPK1
endoplasmic reticulum lumen 3 IL6, MAPK1, PCSK9
nuclear matrix 1 PRKCD
axon terminus 1 DRD2
endocytic vesicle 1 DRD2
beta-catenin-TCF complex 1 CTNNB1
azurophil granule lumen 2 MAPK1, PRKCD
presynaptic endosome 1 PIK3C3
presynaptic active zone cytoplasmic component 1 CTNNB1
calyx of Held 1 PRKCB
spectrin 1 PRKCB
[Isoform 1]: Nucleus 1 ESR1
Synapse, synaptosome 1 PRKCD
protein-DNA complex 1 CTNNB1
endolysosome membrane 1 PCSK9
eNoSc complex 1 SIRT1
rDNA heterochromatin 1 SIRT1
dopaminergic synapse 1 DRD2
somatodendritic compartment 1 MAPT
extrinsic component of external side of plasma membrane 1 PCSK9
catenin complex 1 CTNNB1
nuclear periphery 1 MAPT
presynaptic cytosol 1 PRKCB
postsynaptic endosome 1 PIK3C3
glial cell projection 1 MAPT
PCSK9-LDLR complex 1 PCSK9
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
Autolysosome 1 PIK3C3
alphav-beta3 integrin-PKCalpha complex 1 PRKCA
interleukin-6 receptor complex 1 IL6
neurofibrillary tangle 1 MAPT
PCSK9-AnxA2 complex 1 PCSK9
BAD-BCL-2 complex 1 BCL2
main axon 1 MAPT
tubulin complex 1 MAPT
G protein-coupled receptor complex 1 DRD2
beta-catenin-TCF7L2 complex 1 CTNNB1
endolysosome 1 PRKCD
beta-catenin-ICAT complex 1 CTNNB1
Scrib-APC-beta-catenin complex 1 CTNNB1
[Isoform 12]: Cytoplasm 1 OPRM1
[Isoform Bcl-X(L)]: Mitochondrion inner membrane 1 BCL2L1
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
[SirtT1 75 kDa fragment]: Cytoplasm 1 SIRT1


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