3-hydroxy-3-methylglutarate (BioDeep_00000001249)

 

Secondary id: BioDeep_00000400338, BioDeep_00000405252, BioDeep_00000407352, BioDeep_00000415827

natural product human metabolite PANOMIX_OTCML-2023 Endogenous blood metabolite BioNovoGene_Lab2019


代谢物信息卡片


beta-Hydroxy-beta-methylglutaric acid

化学式: C6H10O5 (162.0528)
中文名称: 3-羟基-3-甲基戊二酸, 3-羟基-3-甲基谷氨酸
谱图信息: 最多检出来源 Homo sapiens(feces) 34.07%

Reviewed

Last reviewed on 2024-09-13.

Cite this Page

3-hydroxy-3-methylglutarate. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China. https://query.biodeep.cn/s/3-hydroxy-3-methylglutarate (retrieved 2024-12-22) (BioDeep RN: BioDeep_00000001249). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

分子结构信息

SMILES: C(C(CC(=O)O)(C)O)C(=O)O
InChI: InChI=1S/C6H10O5/c1-6(11,2-4(7)8)3-5(9)10/h11H,2-3H2,1H3,(H,7,8)(H,9,10)

描述信息

3-Hydroxymethylglutaric acid is an "off-product" intermediate in the leucine degradation process. It is produced by defective or inefficient versions of 3-hydroxy-3-methylglutaryl-CoA lyase, an enzyme that normally catalyzes the conversion of 3-hydroxy-3-methylglutaryl-CoA to acetyl-CoA and acetoacetate. If this enzyme is defective, 3-hydroxy-3-methylglutaryl-CoA will accumulate in the mitochondria. Increased concentrations of 3-hydroxy-3-methylglutaryl-CoA can lead to a disruption of the esterified CoA:free CoA ratio and ultimately to mitochondrial toxicity. Detoxification of these CoA end products occurs via the transfer of the 3-hydroxymethylglutaryl moiety to carnitine, forming 3-hydroxymethylglutaric-carnitine, which is then transferred across the inner mitochondrial membrane where 3-hydroxymethylglutaric acid is released as the free acid. 3-Hydroxymethylglutaric acid has been found to accumulate in the urine of patients affected by 3-Hydroxy-3-methylglutaric aciduria, a rare inborn error of metabolism (OMIM: 246450). 3-Hydroxy-3-methylglutaric aciduria is caused by significantly reduced enzyme activity of the intramitochondrial 3-hydroxy-3-methylglutaryl-CoA lyase (EC 4.1.3.4), the enzyme that catalyzes the final step of leucine degradation. This enzyme also plays a key role in ketone body formation. The profile of urinary organic acids for individuals with 3-hydroxy-3-methylglutaric aciduria is different from that of the other identified defects of leucine degradation, such as maple syrup urine disease (OMIM: 248600), isovaleric acidemia (OMIM: 243500), and methylcrotonylglycinemia (OMIM: 210200). The urinary organic acid profile of 3-hydroxy-3-methylglutaric aciduria includes elevated concentrations of 3-hydroxy-3-isovaleric, 3-hydroxy-3-methylglutaric, 3-methylglutaconic, and 3-methylglutaric acids (PMID: 10916782, 9658458, 3063529). Clinical manifestations of 3-hydroxy-3-methylglutaric aciduria include hepatomegaly, lethargy, coma, and apnea. Biochemically, there is a characteristic absence of ketosis with hypoglycemia, acidosis, hypertransaminasemia, and variable hyperammonemia. Therefore, when present in sufficiently high concentrations, 3-hydroxymethylglutaric acid can act as an acidogen and a metabotoxin. An acidogen is an acidic compound that induces acidosis, which has multiple adverse effects on many organ systems. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. As noted above, chronically high levels of 3-hydroxymethylglutaric acid are associated with the inborn error of metabolism 3-hydroxy-3-methylglutaryl-CoA lyase deficiency. 3-Hydroxymethylglutaric acid is an organic acid. Abnormally high levels of organic acids in the blood (organic acidemia), urine (organic aciduria), the brain, and other tissues lead to general metabolic acidosis. Acidosis typically occurs when arterial pH falls below 7.35. In infants with acidosis, the initial symptoms include poor feeding, vomiting, loss of appetite, weak muscle tone (hypotonia), and lack of energy (lethargy). These can progress to heart, liver, and kidney abnormalities, seizures, coma, and possibly death. These are also the characteristic symptoms of the untreated IEMs mentioned above. Many affected children with organic acidemias experience intellectual disability or delayed development. In adults, acidosis or acidemia is characterized by headaches, confusion, feeling tired, tremors, sleepiness, and seizures.
3-hydroxymethylglutaric acid, also known as meglutol or dicrotalic acid, is a member of the class of compounds known as hydroxy fatty acids. Hydroxy fatty acids are fatty acids in which the chain bears a hydroxyl group. 3-hydroxymethylglutaric acid is soluble (in water) and a weakly acidic compound (based on its pKa). 3-hydroxymethylglutaric acid can be synthesized from glutaric acid. 3-hydroxymethylglutaric acid is also a parent compound for other transformation products, including but not limited to, viscumneoside VII, viscumneoside IV, and yanuthone D. 3-hydroxymethylglutaric acid can be found in flaxseed, which makes 3-hydroxymethylglutaric acid a potential biomarker for the consumption of this food product. 3-hydroxymethylglutaric acid can be found primarily in saliva and urine. 3-hydroxymethylglutaric acid is a non-carcinogenic (not listed by IARC) potentially toxic compound. Chronically high levels of 3-hydroxymethylglutaric acid are associated with the inborn error of metabolism: 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (T3DB).

Meglutol is an antilipidemic agent that lowers cholesterol, triglycerides, and serum beta-lipoproteins and phospholipids, and inhibits hydroxymethylglutaryl-CoA reductase activity, which is the rate-limiting enzyme in cholesterol biosynthesis.
Meglutol is an antilipidemic agent that lowers cholesterol, triglycerides, and serum beta-lipoproteins and phospholipids, and inhibits hydroxymethylglutaryl-CoA reductase activity, which is the rate-limiting enzyme in cholesterol biosynthesis.

同义名列表

41 个代谢物同义名

beta-Hydroxy-beta-methylglutaric acid; Acid, 3-hydroxy-3-methylpentanedioic; 3 Hydroxy 3 methylpentanedioic acid; (S)-3-Hydroxy-3-methylglutaric acid; 3-Methyl-3-hydroxypentanedioic acid; 3-Hydroxy-3-methylpentanedioic acid; beta Hydroxy beta methylglutarate; beta-Hydroxy-beta-methylglutarate; 3-HYDROXY-3-methyl-glutarIC ACID; Acid, 3-hydroxy-3-methylglutaric; (S)-3-Hydroxy-3-methylglutarate; b-Hydroxy-b-methylglutaric acid; 3-Methyl-3-hydroxyglutaric acid; 3-Hydroxy-3-methylpentanedioate; 3-Hydorxy-3-methylglutaric acid; 3-Hydroxy-3-methylglutaric acid; 3 Hydroxy 3 methylglutaric acid; 3-Methyl-3-hydroxypentanedioate; Β-hydroxy-β-methylglutaric acid; 3-HYDROXY-3-methyl-glutarate; 3-Hydroxymethylglutaric acid; 3-Methyl-3-hydroxyglutarate; Β-hydroxy-β-methylglutarate; 3-Hydroxy-3-methylglutarate; 3-Hydorxy-3-methylglutarate; b-Hydroxy-b-methylglutarate; 3-Hydroxymethylglutarate; Medroglutaric acid; Dicrotalic acid; Medroglutarate; Lipoglutaren; (S)-Meglutol; Dicrotalate; Meglutolum; MEGLUTOL; CB 337; HMGA; HMG; 3-Hydroxymethylglutaric acid; 3-Hydroxy-3-methylglutaric acid; 3-Hydroxy-3-methylglutarate



数据库引用编号

34 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

16 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 10 CASP3, CAT, CCNB2, CDKN1A, E2F1, EGFR, HMGB1, HMGB2, HPD, TP53
Peripheral membrane protein 2 HMGB1, HPD
Endosome membrane 1 EGFR
Endoplasmic reticulum membrane 3 EGFR, HMGCR, HPD
Nucleus 12 CASP3, CCNB2, CDKN1A, E2F1, EGFR, HMGA1, HMGA2, HMGB1, HMGB2, MKI67, PPARGC1A, TP53
cytosol 10 CASP3, CAT, CCNB2, CDKN1A, HGD, HMGA1, HMGCL, HPD, PPARGC1A, TP53
nuclear body 2 CDKN1A, MKI67
centrosome 3 CCNB2, E2F1, TP53
nucleoplasm 10 CASP3, CDKN1A, E2F1, HMGA1, HMGA2, HMGB1, HMGB2, MKI67, PPARGC1A, TP53
RNA polymerase II transcription regulator complex 2 E2F1, HMGA1
Cell membrane 3 EGFR, HMGB1, TNF
ruffle membrane 1 EGFR
Early endosome membrane 1 EGFR
Multi-pass membrane protein 3 HMGCR, MFN1, SYP
Golgi apparatus membrane 1 HPD
cell junction 1 EGFR
cell surface 3 EGFR, HMGB1, TNF
glutamatergic synapse 2 CASP3, EGFR
Golgi membrane 2 EGFR, HPD
neuromuscular junction 1 SYP
neuronal cell body 2 CASP3, TNF
presynaptic membrane 1 SYP
synaptic vesicle 1 SYP
endosome 2 EGFR, HMGB1
plasma membrane 3 EGFR, HMGB1, TNF
presynaptic active zone 1 SYP
synaptic vesicle membrane 1 SYP
terminal bouton 1 SYP
Membrane 8 CAT, CCNB2, EGFR, HMGCR, MFN1, MKI67, SYP, TP53
apical plasma membrane 1 EGFR
basolateral plasma membrane 1 EGFR
extracellular exosome 3 CAT, HGD, HPD
endoplasmic reticulum 3 HMGB1, HMGCR, TP53
extracellular space 4 EGFR, HMGB1, HMGB2, TNF
perinuclear region of cytoplasm 4 CDKN1A, EGFR, HMGB2, SYP
Schaffer collateral - CA1 synapse 1 SYP
mitochondrion 4 CAT, HMGCL, MFN1, TP53
protein-containing complex 7 CAT, CDKN1A, E2F1, EGFR, HMGB2, HMGCL, TP53
intracellular membrane-bounded organelle 1 CAT
postsynaptic density 1 CASP3
Single-pass type I membrane protein 1 EGFR
Secreted 2 HMGB1, HMGB2
extracellular region 4 CAT, HMGB1, HMGB2, TNF
Mitochondrion outer membrane 1 MFN1
mitochondrial outer membrane 1 MFN1
excitatory synapse 1 SYP
Mitochondrion matrix 2 HMGCL, TP53
mitochondrial matrix 3 CAT, HMGCL, TP53
Extracellular side 1 HMGB1
transcription regulator complex 2 HMGA1, TP53
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 1 TP53
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 SYP
nuclear membrane 1 EGFR
external side of plasma membrane 1 TNF
microtubule cytoskeleton 1 CCNB2
nucleolus 4 CDKN1A, HMGB2, MKI67, TP53
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Membrane raft 2 EGFR, TNF
Cytoplasm, cytoskeleton 1 TP53
focal adhesion 3 CAT, EGFR, HMGA1
Peroxisome 2 CAT, HMGCL
intracellular vesicle 1 EGFR
Peroxisome matrix 1 CAT
peroxisomal matrix 2 CAT, HMGCL
peroxisomal membrane 2 CAT, HMGCR
Nucleus, PML body 2 PPARGC1A, TP53
PML body 2 PPARGC1A, TP53
receptor complex 1 EGFR
neuron projection 1 SYP
chromatin 6 E2F1, HMGA1, HMGA2, HMGB2, PPARGC1A, TP53
phagocytic cup 1 TNF
Chromosome 4 HMGA1, HMGB1, HMGB2, MKI67
Nucleus, nucleolus 1 MKI67
nuclear chromosome 1 HMGA2
site of double-strand break 1 TP53
Endomembrane system 1 SYP
germ cell nucleus 1 TP53
replication fork 1 TP53
Peroxisome membrane 1 HMGCR
basal plasma membrane 1 EGFR
synaptic membrane 1 EGFR
ficolin-1-rich granule lumen 2 CAT, HMGB1
secretory granule lumen 2 CAT, HMGB1
nuclear matrix 1 TP53
transcription repressor complex 2 HMGB1, TP53
[Isoform 2]: Cytoplasm 1 MFN1
clathrin-coated endocytic vesicle membrane 1 EGFR
endoplasmic reticulum-Golgi intermediate compartment 1 HMGB1
[Isoform 1]: Nucleus 2 PPARGC1A, TP53
Synapse, synaptosome 1 SYP
SMAD protein complex 1 HMGA2
protein-DNA complex 1 HMGA2
death-inducing signaling complex 1 CASP3
condensed chromosome 2 HMGB1, HMGB2
cyclin-dependent protein kinase holoenzyme complex 2 CCNB2, CDKN1A
multivesicular body, internal vesicle lumen 1 EGFR
Shc-EGFR complex 1 EGFR
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
catalase complex 1 CAT
alphav-beta3 integrin-HMGB1 complex 1 HMGB1
Rb-E2F complex 1 E2F1
PCNA-p21 complex 1 CDKN1A
senescence-associated heterochromatin focus 2 HMGA1, HMGA2
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
outer mitochondrial membrane protein complex 1 MFN1
[Isoform B4]: Nucleus 1 PPARGC1A
[Isoform B4-8a]: Cytoplasm 1 PPARGC1A
[Isoform B5]: Nucleus 1 PPARGC1A
[Isoform 9]: Nucleus 1 PPARGC1A


文献列表

  • Brian J Koos, Jeffrey A Gornbein. Early pregnancy metabolites predict gestational diabetes mellitus: implications for fetal programming. American journal of obstetrics and gynecology. 2021 02; 224(2):215.e1-215.e7. doi: 10.1016/j.ajog.2020.07.050. [PMID: 32739399]
  • Nevton Teixeira da Rosa-Junior, Belisa Parmeggiani, Nícolas Manzke Glänzel, Leonardo de Moura Alvorcem, Marina Rocha Frusciante, Carlos Severo Dutra Filho, Moacir Wajner, Guilhian Leipnitz. In vivo evidence that bezafibrate prevents oxidative stress and mitochondrial dysfunction caused by 3-methylglutaric acid in rat liver. Biochimie. 2020 Apr; 171-172(?):187-196. doi: 10.1016/j.biochi.2020.03.007. [PMID: 32169667]
  • Dylan E Jones, Leanne Perez, Robert O Ryan. 3-Methylglutaric acid in energy metabolism. Clinica chimica acta; international journal of clinical chemistry. 2020 Mar; 502(?):233-239. doi: 10.1016/j.cca.2019.11.006. [PMID: 31730811]
  • Mateus Struecker da Rosa, Nevton Teixeira da Rosa-Junior, Belisa Parmeggiani, Nícolas Manzke Glänzel, Leonardo de Moura Alvorcem, Rafael Teixeira Ribeiro, Mateus Grings, Moacir Wajner, Guilhian Leipnitz. 3-Hydroxy-3-Methylglutaric Acid Impairs Redox and Energy Homeostasis, Mitochondrial Dynamics, and Endoplasmic Reticulum-Mitochondria Crosstalk in Rat Brain. Neurotoxicity research. 2020 Feb; 37(2):314-325. doi: 10.1007/s12640-019-00122-x. [PMID: 31721046]
  • Camila Aguilar Delgado, Gilian Batista Balbueno Guerreiro, Carlos Eduardo Diaz Jacques, Daniella de Moura Coelho, Angela Sitta, Vanusa Manfredini, Moacir Wajner, Carmen Regla Vargas. Prevention by L-carnitine of DNA damage induced by 3-hydroxy-3-methylglutaric and 3-methylglutaric acids and experimental evidence of lipid and DNA damage in patients with 3-hydroxy-3-methylglutaric aciduria. Archives of biochemistry and biophysics. 2019 06; 668(?):16-22. doi: 10.1016/j.abb.2019.04.008. [PMID: 31047871]
  • Nevton Teixeira da Rosa-Junior, Belisa Parmeggiani, Mateus Struecker da Rosa, Nícolas Manzke Glänzel, Leonardo de Moura Alvorcem, Moacir Wajner, Guilhian Leipnitz. Bezafibrate In Vivo Administration Prevents 3-Methylglutaric Acid-Induced Impairment of Redox Status, Mitochondrial Biogenesis, and Neural Injury in Brain of Developing Rats. Neurotoxicity research. 2019 May; 35(4):809-822. doi: 10.1007/s12640-019-00019-9. [PMID: 30850947]
  • Jaime Fernández-Bravo, Fernando de Andrés, Mohammed Zougagh, Ángel Ríos. Selective screening of glutaric acid acidurias by capillary electrophoresis-mass spectrometry. Journal of pharmaceutical and biomedical analysis. 2017 Oct; 145(?):40-45. doi: 10.1016/j.jpba.2017.06.037. [PMID: 28648786]
  • Dominique Roland, Patrice Jissendi-Tchofo, Gilbert Briand, Joseph Vamecq, Monique Fontaine, Vincent Ultré, Cécile Acquaviva-Bourdain, Karine Mention, Dries Dobbelaere. Coupled brain and urine spectroscopy - in vivo metabolomic characterization of HMG-CoA lyase deficiency in 5 patients. Molecular genetics and metabolism. 2017 06; 121(2):111-118. doi: 10.1016/j.ymgme.2017.03.006. [PMID: 28396157]
  • Ana Laura Colín-González, Ariana Lizbeth Paz-Loyola, María Eduarda de Lima, Sonia Galván-Arzate, Bianca Seminotti, César Augusto João Ribeiro, Guilhian Leipnitz, Diogo Onofre Souza, Moacir Wajner, Abel Santamaría. Experimental Evidence that 3-Methylglutaric Acid Disturbs Mitochondrial Function and Induced Oxidative Stress in Rat Brain Synaptosomes: New Converging Mechanisms. Neurochemical research. 2016 Oct; 41(10):2619-2626. doi: 10.1007/s11064-016-1973-2. [PMID: 27278758]
  • Mateus Struecker da Rosa, Bianca Seminotti, César Augusto João Ribeiro, Belisa Parmeggiani, Mateus Grings, Moacir Wajner, Guilhian Leipnitz. 3-Hydroxy-3-methylglutaric and 3-methylglutaric acids impair redox status and energy production and transfer in rat heart: relevance for the pathophysiology of cardiac dysfunction in 3-hydroxy-3-methylglutaryl-coenzyme A lyase deficiency. Free radical research. 2016 Sep; 50(9):997-1010. doi: 10.1080/10715762.2016.1214952. [PMID: 27430492]
  • Mariana Dos Santos Mello, Graziela Schmitt Ribas, Carlos Alberto Yasin Wayhs, Tatiane Hammerschmidt, Gilian Batista Balbueno Guerreiro, Jéssica Lamberty Favenzani, Ângela Sitta, Daniella de Moura Coelho, Moacir Wajner, Carmen Regla Vargas. Increased oxidative stress in patients with 3-hydroxy-3-methylglutaric aciduria. Molecular and cellular biochemistry. 2015 Apr; 402(1-2):149-55. doi: 10.1007/s11010-014-2322-x. [PMID: 25557019]
  • S Sofer, A Schweiger, L Blumkin, G Yahalom, Y Anikster, D Lev, B Ben-Zeev, T Lerman-Sagie, S Hassin-Baer. The neuropsychological profile of patients with 3-methylglutaconic aciduria type III, Costeff syndrome. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics. 2015 Apr; 168B(3):197-203. doi: 10.1002/ajmg.b.32296. [PMID: 25657044]
  • Carolina Gonçalves Fernandes, Mateus Struecker da Rosa, Bianca Seminotti, Paula Pierozan, Rafael Wolter Martell, Valeska Lizzi Lagranha, Estela Natacha Brandt Busanello, Guilhian Leipnitz, Moacir Wajner. In vivo experimental evidence that the major metabolites accumulating in 3-hydroxy-3-methylglutaryl-CoA lyase deficiency induce oxidative stress in striatum of developing rats: a potential pathophysiological mechanism of striatal damage in this disorder. Molecular genetics and metabolism. 2013 Jun; 109(2):144-53. doi: 10.1016/j.ymgme.2013.03.017. [PMID: 23611578]
  • Francesca Santarelli, Michela Cassanello, Ausilia Enea, Francesca Poma, Valentina D'Onofrio, Giovanna Guala, Giangiacomo Garrone, Paola Puccinelli, Ubaldo Caruso, Francesco Porta, Marco Spada. A neonatal case of 3-hydroxy-3-methylglutaric-coenzyme A lyase deficiency. Italian journal of pediatrics. 2013 May; 39(?):33. doi: 10.1186/1824-7288-39-33. [PMID: 23705938]
  • Steven M Colegate, Dale R Gardner, T Zane Davis, Joseph M Betz, Kip E Panter. Dehydropyrrolizidine alkaloids in two Cryptantha species: including two new open chain diesters one of which is amphoteric. Phytochemical analysis : PCA. 2013 May; 24(3):201-12. doi: 10.1002/pca.2400. [PMID: 23070903]
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