Yersiniabactin (BioDeep_00000004353)

   

natural product


代谢物信息卡片


Yersiniabactin

化学式: C21H27N3O4S3 (481.1164)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(COVID-19)(not specific) 21.43%

分子结构信息

SMILES: CC(C)(C1=N[C@@](C)(C(=O)O)CS1)[C@H](O)[C@@H]1CSC([C@H]2CSC(c3ccccc3O)=N2)N1
InChI: InChI=1S/C21H27N3O4S3/c1-20(2,18-24-21(3,10-31-18)19(27)28)15(26)12-8-30-17(22-12)13-9-29-16(23-13)11-6-4-5-7-14(11)25/h4-7,12-13,15,17,22,25-26H,8-10H2,1-3H3,(H,27,28)/t12-,13+,15+,17?,21+/m0/s1

描述信息

A member of the class of thiazolidines that is (4S)-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid which is substituted at position 2 by a (1S)-1-hydroxy-1-{(4R)-2-[(4R)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl}-2-methylpropan-2-yl group. A siderophore found in the gram-negative bacterium species, Yersinia enterocolitica and Yersinia pestis.
D064449 - Sequestering Agents > D002614 - Chelating Agents > D007502 - Iron Chelating Agents

同义名列表

1 个代谢物同义名

Yersiniabactin



数据库引用编号

16 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

10 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 5 ACO1, ARMC1, HIF1A, IREB2, WNT2
Peripheral membrane protein 2 CYP27A1, RS1
Endosome membrane 1 TF
Mitochondrion membrane 1 CYP27A1
Nucleus 1 HIF1A
cytosol 5 ACO1, ARMC1, HIF1A, IREB2, STX1A
dendrite 1 CADM1
nuclear body 1 HIF1A
nucleoplasm 1 HIF1A
RNA polymerase II transcription regulator complex 1 HIF1A
Cell membrane 5 CADM1, PCP2, RECK, RS1, STX1A
lamellipodium 1 STX2
Synapse 1 CADM1
cell junction 1 PCP2
cell surface 1 TF
Golgi apparatus 1 ACO1
mitochondrial inner membrane 1 CYP27A1
neuronal cell body 1 PCP2
synaptic vesicle 2 STX1A, STX2
Cytoplasm, cytosol 1 ACO1
endosome 1 UEVLD
plasma membrane 8 CADM1, PCP2, RECK, SERPINE1, ST14, STX1A, STX2, TF
synaptic vesicle membrane 1 STX1A
Membrane 4 CADM1, RECK, ST14, STX2
apical plasma membrane 1 TF
axon 1 STX1A
basolateral plasma membrane 3 CADM1, ST14, STX2
extracellular exosome 5 ACO1, LCN2, SERPINE1, TF, UEVLD
endoplasmic reticulum 1 ACO1
extracellular space 10 CCL20, CXCL8, IL24, LCN2, RS1, SERPINE1, ST14, STX2, TF, WNT2
perinuclear region of cytoplasm 1 TF
mitochondrion 4 ACO1, ARMC1, CYP27A1, IREB2
protein-containing complex 3 HIF1A, RS1, STX2
intracellular membrane-bounded organelle 1 STX2
postsynaptic density 1 CADM1
Single-pass type I membrane protein 2 CADM1, PCP2
Secreted 8 CCL20, CXCL8, IL24, LCN2, RS1, SERPINE1, TF, WNT2
extracellular region 9 CCL20, CXCL8, IL24, LCN2, RECK, SERPINE1, STX1A, TF, WNT2
Mitochondrion outer membrane 1 ARMC1
Single-pass membrane protein 1 CADM1
mitochondrial outer membrane 1 ARMC1
basal part of cell 1 TF
[Isoform 2]: Secreted 1 STX1A
mitochondrial matrix 1 CYP27A1
Extracellular side 1 RS1
Cytoplasmic vesicle lumen 1 LCN2
motile cilium 1 HIF1A
photoreceptor inner segment 1 RS1
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 STX1A
nuclear membrane 1 STX1A
external side of plasma membrane 2 RS1, ST14
Secreted, extracellular space, extracellular matrix 1 WNT2
cytoplasmic vesicle 1 TF
Wnt signalosome 2 RECK, WNT2
axon cytoplasm 1 HIF1A
Early endosome 1 TF
cell-cell junction 2 CADM1, PCP2
clathrin-coated pit 1 TF
recycling endosome 1 TF
Single-pass type II membrane protein 1 ST14
vesicle 1 TF
presynaptic active zone membrane 2 STX1A, STX2
Mitochondrion inner membrane 1 CYP27A1
collagen-containing extracellular matrix 2 SERPINE1, WNT2
nuclear speck 1 HIF1A
Late endosome 1 TF
neuron to neuron synapse 1 RS1
neuron projection 2 CADM1, STX1A
chromatin 1 HIF1A
blood microparticle 1 TF
ESCRT I complex 1 UEVLD
Lipid-anchor, GPI-anchor 1 RECK
Endomembrane system 2 STX1A, STX2
Nucleus speckle 1 HIF1A
euchromatin 1 HIF1A
side of membrane 1 RECK
basal plasma membrane 1 TF
SNARE complex 2 STX1A, STX2
secretory granule lumen 1 TF
HFE-transferrin receptor complex 1 TF
endoplasmic reticulum lumen 1 TF
platelet alpha granule lumen 1 SERPINE1
specific granule lumen 1 LCN2
endocytic vesicle 1 TF
Single-pass type IV membrane protein 1 STX1A
clathrin-coated endocytic vesicle membrane 1 TF
Synapse, synaptosome 1 STX1A
serine protease inhibitor complex 1 SERPINE1
vesicle coat 1 TF
peptidase inhibitor complex 1 SERPINE1
synaptobrevin 2-SNAP-25-syntaxin-1a complex 1 STX1A
dense body 1 TF
Cytoplasmic granule lumen 1 LCN2


文献列表

  • Thomas A Russo, Ruth Olson, Ulrike MacDonald, Janet Beanan, Bruce A Davidson. Aerobactin, but not yersiniabactin, salmochelin, or enterobactin, enables the growth/survival of hypervirulent (hypermucoviscous) Klebsiella pneumoniae ex vivo and in vivo. Infection and immunity. 2015 Aug; 83(8):3325-33. doi: 10.1128/iai.00430-15. [PMID: 26056379]
  • Laura J Searle, Guillaume Méric, Ida Porcelli, Samuel K Sheppard, Sacha Lucchini. Variation in siderophore biosynthetic gene distribution and production across environmental and faecal populations of Escherichia coli. PloS one. 2015; 10(3):e0117906. doi: 10.1371/journal.pone.0117906. [PMID: 25756870]
  • Tamara Kakoschke, Sara Kakoschke, Giuseppe Magistro, Sören Schubert, Marc Borath, Jürgen Heesemann, Ombeline Rossier. The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica. PloS one. 2014; 9(1):e86113. doi: 10.1371/journal.pone.0086113. [PMID: 24454955]
  • Ariel R Brumbaugh, Sara N Smith, Harry L T Mobley. Immunization with the yersiniabactin receptor, FyuA, protects against pyelonephritis in a murine model of urinary tract infection. Infection and immunity. 2013 Sep; 81(9):3309-16. doi: 10.1128/iai.00470-13. [PMID: 23798537]
  • Michael A Bachman, Jennifer E Oyler, Samuel H Burns, Mélissa Caza, François Lépine, Charles M Dozois, Jeffrey N Weiser. Klebsiella pneumoniae yersiniabactin promotes respiratory tract infection through evasion of lipocalin 2. Infection and immunity. 2011 Aug; 79(8):3309-16. doi: 10.1128/iai.05114-11. [PMID: 21576334]
  • Alexander M Jones, Mary C Wildermuth. The phytopathogen Pseudomonas syringae pv. tomato DC3000 has three high-affinity iron-scavenging systems functional under iron limitation conditions but dispensable for pathogenesis. Journal of bacteriology. 2011 Jun; 193(11):2767-75. doi: 10.1128/jb.00069-10. [PMID: 21441525]
  • Shana R Petermann, Julie S Sherwood, Catherine M Logue. The Yersinia high pathogenicity island is present in Salmonella enterica Subspecies I isolated from turkeys. Microbial pathogenesis. 2008 Aug; 45(2):110-4. doi: 10.1016/j.micpath.2008.04.001. [PMID: 18495411]
  • Alexander M Jones, Steven E Lindow, Mary C Wildermuth. Salicylic acid, yersiniabactin, and pyoverdin production by the model phytopathogen Pseudomonas syringae pv. tomato DC3000: synthesis, regulation, and impact on tomato and Arabidopsis host plants. Journal of bacteriology. 2007 Oct; 189(19):6773-86. doi: 10.1128/jb.00827-07. [PMID: 17660289]
  • Marianne Valdebenito, Alvin L Crumbliss, Günther Winkelmann, Klaus Hantke. Environmental factors influence the production of enterobactin, salmochelin, aerobactin, and yersiniabactin in Escherichia coli strain Nissle 1917. International journal of medical microbiology : IJMM. 2006 Dec; 296(8):513-20. doi: 10.1016/j.ijmm.2006.06.003. [PMID: 17008127]
  • James R Johnson, Michael A Kuskowski, Abby Gajewski, Sara Soto, Juan Pablo Horcajada, M Teresa Jimenez de Anta, Jordi Vila. Extended virulence genotypes and phylogenetic background of Escherichia coli isolates from patients with cystitis, pyelonephritis, or prostatitis. The Journal of infectious diseases. 2005 Jan; 191(1):46-50. doi: 10.1086/426450. [PMID: 15593002]
  • S Schubert, S Cuenca, D Fischer, J Heesemann. High-pathogenicity island of Yersinia pestis in enterobacteriaceae isolated from blood cultures and urine samples: prevalence and functional expression. The Journal of infectious diseases. 2000 Oct; 182(4):1268-71. doi: 10.1086/315831. [PMID: 10979932]
  • C E Chambers, D D McIntyre, M Mouck, P A Sokol. Physical and structural characterization of yersiniophore, a siderophore produced by clinical isolates of Yersinia enterocolitica. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine. 1996 Apr; 9(2):157-67. doi: 10.1007/bf00144621. [PMID: 8744899]