Deoxyribose 1-phosphate (BioDeep_00000003368)

 

Secondary id: BioDeep_00001869432

natural product human metabolite PANOMIX_OTCML-2023 Endogenous


代谢物信息卡片


{[(4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}phosphonic acid

化学式: C5H11O7P (214.0242)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(otcml) 13.72%

分子结构信息

SMILES: C1C(C(OC1OP(=O)(O)O)CO)O
InChI: InChI=1S/C5H11O7P/c6-2-4-3(7)1-5(11-4)12-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1



数据库引用编号

24 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(5)

PlantCyc(0)

代谢反应

102 个相关的代谢反应过程信息。

Reactome(3)

BioCyc(9)

WikiPathways(0)

Plant Reactome(0)

INOH(7)

PlantCyc(0)

COVID-19 Disease Map(1)

PathBank(82)

PharmGKB(0)

3 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 10 ANXA6, APRT, MTOR, NOX4, PGM2, PNP, PTK2, RAP1B, TEP1, VEGFA
Peripheral membrane protein 3 ANXA6, MTOR, PTK2
Endoplasmic reticulum membrane 3 CYBB, MTOR, NOX4
Nucleus 6 KDR, MTOR, NOX4, PTK2, TEP1, VEGFA
cytosol 11 APRT, MTOR, PGM2, PNP, PRKCQ, PTK2, RAP1B, SLC2A1, TEP1, TYMP, UPP1
dendrite 2 CYBB, MTOR
phagocytic vesicle 2 CYBB, MTOR
centrosome 1 PTK2
nucleoplasm 4 APRT, MTOR, TEP1, UPP1
Cell membrane 7 CYBB, ITGAM, KDR, NOX4, PTK2, RAP1B, SLC2A1
Cytoplasmic side 2 MTOR, PTK2
Multi-pass membrane protein 3 CYBB, NOX4, SLC2A1
Golgi apparatus membrane 1 MTOR
cell cortex 1 PTK2
cell junction 2 KDR, RAP1B
cell surface 2 ITGAM, VEGFA
glutamatergic synapse 1 RAP1B
Golgi apparatus 2 KDR, VEGFA
Golgi membrane 2 MTOR, SLC2A1
lysosomal membrane 2 ANXA6, MTOR
neuronal cell body 1 CYBB
sarcolemma 2 ANXA6, SLC2A1
Cytoplasm, cytosol 2 PGM2, RAP1B
Lysosome 1 MTOR
Presynapse 1 SLC2A1
endosome 1 KDR
plasma membrane 11 CYBB, F2, IFNLR1, ITGAM, KDR, NOX4, PRKCQ, PTK2, RAP1B, SLC2A1, TEP1
Membrane 9 ANXA6, CYBB, IFNLR1, ITGAM, MTOR, NOX4, RAP1B, SLC2A1, VEGFA
apical plasma membrane 2 SLC2A1, TEP1
basolateral plasma membrane 1 SLC2A1
caveola 1 SLC2A1
extracellular exosome 8 ANXA6, APRT, F2, ITGAM, PGM2, PNP, RAP1B, SLC2A1
Lysosome membrane 1 MTOR
endoplasmic reticulum 3 KDR, NOX4, VEGFA
extracellular space 5 F2, IFNA1, ITGAM, PNP, VEGFA
perinuclear region of cytoplasm 3 ANXA6, NOX4, PTK2
adherens junction 1 VEGFA
intercalated disc 1 SLC2A1
mitochondrion 2 ANXA6, NOX4
intracellular membrane-bounded organelle 1 PTK2
Microsome membrane 1 MTOR
postsynaptic density 1 TEP1
TORC1 complex 1 MTOR
TORC2 complex 1 MTOR
Single-pass type I membrane protein 2 IFNLR1, ITGAM
Secreted 4 F2, IFNA1, PNP, VEGFA
extracellular region 7 APRT, F2, KDR, PGM2, PNP, TEP1, VEGFA
cytoplasmic side of plasma membrane 1 TEP1
Mitochondrion outer membrane 1 MTOR
mitochondrial outer membrane 1 MTOR
[Isoform 2]: Secreted 1 KDR
anchoring junction 2 KDR, PTK2
centriolar satellite 1 PRKCQ
photoreceptor inner segment 1 SLC2A1
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 1 PTK2
external side of plasma membrane 2 ITGAM, KDR
Secreted, extracellular space, extracellular matrix 1 VEGFA
dendritic spine 2 PTK2, TEP1
Z disc 1 SLC2A1
nucleolus 1 NOX4
midbody 1 SLC2A1
Early endosome 1 KDR
cell-cell junction 1 RAP1B
Cytoplasm, perinuclear region 2 NOX4, PTK2
Membrane raft 2 ITGAM, KDR
Cell junction, focal adhesion 2 NOX4, PTK2
Cytoplasm, cytoskeleton 1 PTK2
focal adhesion 3 ANXA6, NOX4, PTK2
extracellular matrix 1 VEGFA
Cell projection, dendritic spine 1 TEP1
Nucleus, PML body 2 MTOR, TEP1
PML body 2 MTOR, TEP1
collagen-containing extracellular matrix 2 ANXA6, F2
secretory granule 1 VEGFA
receptor complex 1 KDR
Zymogen granule membrane 1 ANXA6
neuron projection 1 TEP1
ciliary basal body 1 PTK2
Late endosome membrane 1 ANXA6
cell projection 2 PTK2, TEP1
phagocytic vesicle membrane 1 CYBB
cytoskeleton 1 PTK2
Cytoplasm, cytoskeleton, cilium basal body 1 PTK2
[Isoform 5]: Cytoplasm 1 NOX4
Nucleus, nucleolus 1 NOX4
chromosome, telomeric region 1 TEP1
Cytoplasm, cell cortex 1 PTK2
blood microparticle 2 F2, SLC2A1
nuclear envelope 2 CYBB, MTOR
Endomembrane system 2 MTOR, RAP1B
sorting endosome 1 KDR
Lipid droplet 1 RAP1B
monoatomic ion channel complex 1 CYBB
female germ cell nucleus 1 SLC2A1
specific granule membrane 2 CYBB, ITGAM
tertiary granule membrane 2 CYBB, ITGAM
Melanosome 2 ANXA6, SLC2A1
stress fiber 1 PTK2
[Isoform 3]: Cytoplasm 1 NOX4
plasma membrane raft 1 ITGAM
ficolin-1-rich granule lumen 2 PGM2, PNP
secretory granule lumen 3 APRT, PGM2, PNP
Golgi lumen 1 F2
endoplasmic reticulum lumen 1 F2
nuclear matrix 1 TEP1
cortical actin cytoskeleton 1 SLC2A1
platelet alpha granule lumen 1 VEGFA
azurophil granule membrane 1 RAP1B
Schmidt-Lanterman incisure 1 TEP1
immunological synapse 1 PRKCQ
aggresome 1 PRKCQ
perinuclear endoplasmic reticulum 2 CYBB, NOX4
telomerase holoenzyme complex 1 TEP1
vesicle membrane 1 ANXA6
ribonucleoprotein complex 1 TEP1
female pronucleus 1 SLC2A1
Cytoplasmic vesicle, phagosome 1 MTOR
integrin complex 1 ITGAM
[Isoform 4]: Nucleus 1 NOX4
NADPH oxidase complex 2 CYBB, NOX4
integrin alphaM-beta2 complex 1 ITGAM
myelin sheath adaxonal region 1 TEP1
[Isoform 6]: Cytoplasm 1 NOX4
glucose transporter complex 1 SLC2A1
[Isoform alpha]: Secreted 1 TEP1
[N-VEGF]: Cytoplasm 1 VEGFA
[VEGFA]: Secreted 1 VEGFA
[Isoform L-VEGF189]: Endoplasmic reticulum 1 VEGFA
[Isoform VEGF121]: Secreted 1 VEGFA
[Isoform VEGF165]: Secreted 1 VEGFA
VEGF-A complex 1 VEGFA
interleukin-28 receptor complex 1 IFNLR1


文献列表

  • Shiladitya Sengupta, Lynda A Sellers, Hugh B Matheson, Tai-Ping D Fan. Thymidine phosphorylase induces angiogenesis in vivo and in vitro: an evaluation of possible mechanisms. British journal of pharmacology. 2003 May; 139(2):219-31. doi: 10.1038/sj.bjp.0705216. [PMID: 12770927]
  • R Fänge, M L Johansson-Sjöbeck. The effect of splenectomy on the hematology and on the activity of delta-aminolevulinic acid dehydratase (ALA-D) in hemopoietic tissues of the dogfish, Scyliorhinus canicula (Elasmobranchii). Comparative biochemistry and physiology. A, Comparative physiology. 1975 Dec; 52(4):577-80. doi: 10.1016/s0300-9629(75)80002-8. [PMID: 1175]