Rhamnose (BioDeep_00000276259)

Main id: BioDeep_00000015533

Secondary id: BioDeep_00000003542, BioDeep_00000400452, BioDeep_00000863372, BioDeep_00000897280

natural product PANOMIX_OTCML-2023 BioNovoGene_Lab2019


代谢物信息卡片


alpha-L-Rhamnose

化学式: C6H12O5 (164.0685)
中文名称: L-鼠李糖, L-鼠李糖 一水合物, 6-脱氧葡萄糖
谱图信息: 最多检出来源 Homo sapiens(lipidsearch) 15.47%

分子结构信息

SMILES: CC1C(C(C(C(O1)O)O)O)O
InChI: InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3

描述信息

Rhamnose (L-Rhamnose) is a monosaccharide found in plants and bacteria. Rhamnose-conjugated immunogens is used in immunotherapies[1]. Rhamnose crosses the epithelia via the transcellular pathway and acts as a marker of intestinal absorption[2].
Rhamnose (L-Rhamnose) is a monosaccharide found in plants and bacteria. Rhamnose-conjugated immunogens is used in immunotherapies[1]. Rhamnose crosses the epithelia via the transcellular pathway and acts as a marker of intestinal absorption[2].

同义名列表

6 个代谢物同义名

Rhamnose; alpha-L-Rhamnose; 6-Deoxy-Hexose; L-Rhamnose; L-Rhamnose; 6-Deoxyglucose



数据库引用编号

36 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

121 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 BCL2, CASP3, CAT, PTGS2, TLR2, TLR4
Peripheral membrane protein 1 PTGS2
Endosome membrane 1 TLR4
Endoplasmic reticulum membrane 3 BCL2, CD4, PTGS2
Nucleus 3 BCL2, CASP3, FABP2
cytosol 7 AGPS, ARAF, BCL2, CASP3, CAT, FABP2, LIPE
nucleoplasm 1 CASP3
Cell membrane 5 CD4, CD8A, LIPE, TLR4, TNF
Synapse 1 C1QA
cell surface 3 TLR2, TLR4, TNF
glutamatergic synapse 2 C1QA, CASP3
Golgi apparatus 2 SI, TLR2
Golgi membrane 1 INS
neuronal cell body 2 CASP3, TNF
postsynapse 1 C1QA
Cytoplasm, cytosol 1 LIPE
plasma membrane 6 CD4, CD8A, SI, TLR2, TLR4, TNF
Membrane 7 AGPS, BCL2, CAT, LIPE, SI, TLR2, TLR4
apical plasma membrane 1 SI
brush border 1 SI
caveola 2 LIPE, PTGS2
extracellular exosome 3 CAT, LYZ, SI
endoplasmic reticulum 2 BCL2, PTGS2
extracellular space 6 CXCL8, IL10, IL6, INS, LYZ, TNF
perinuclear region of cytoplasm 1 TLR4
mitochondrion 4 AGPS, ARAF, BCL2, CAT
protein-containing complex 3 BCL2, CAT, PTGS2
intracellular membrane-bounded organelle 1 CAT
Microsome membrane 1 PTGS2
postsynaptic density 1 CASP3
Single-pass type I membrane protein 4 CD4, CD8A, TLR2, TLR4
Secreted 5 C1QA, CXCL8, IL10, IL6, INS
extracellular region 9 C1QA, CAT, CD8A, CXCL8, IL10, IL6, INS, LYZ, TNF
Mitochondrion outer membrane 1 BCL2
Single-pass membrane protein 1 BCL2
mitochondrial outer membrane 1 BCL2
[Isoform 2]: Secreted 1 CD8A
mitochondrial matrix 1 CAT
Nucleus membrane 1 BCL2
Bcl-2 family protein complex 1 BCL2
nuclear membrane 1 BCL2
external side of plasma membrane 4 CD4, CD8A, TLR4, TNF
Early endosome 2 CD4, TLR4
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Membrane raft 3 CD4, TLR2, TNF
pore complex 1 BCL2
focal adhesion 1 CAT
Peroxisome 2 AGPS, CAT
collagen trimer 1 C1QA
Peroxisome matrix 1 CAT
peroxisomal matrix 2 AGPS, CAT
peroxisomal membrane 2 AGPS, CAT
collagen-containing extracellular matrix 1 C1QA
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 1 PTGS2
nuclear outer membrane 1 PTGS2
Cell projection, ruffle 1 TLR4
ruffle 1 TLR4
receptor complex 3 CD8A, TLR2, TLR4
neuron projection 1 PTGS2
Cytoplasmic vesicle, phagosome membrane 1 TLR2
cell projection 1 TLR2
phagocytic cup 2 TLR4, TNF
phagocytic vesicle membrane 1 TLR2
endosome lumen 1 INS
microvillus 1 FABP2
Lipid droplet 1 LIPE
Membrane, caveola 1 LIPE
cell body 1 TLR2
myelin sheath 1 BCL2
Peroxisome membrane 1 AGPS
lipopolysaccharide receptor complex 1 TLR4
plasma membrane raft 1 CD8A
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 2 CAT, INS
secretory granule membrane 1 TLR2
Golgi lumen 1 INS
endoplasmic reticulum lumen 4 CD4, IL6, INS, PTGS2
specific granule lumen 1 LYZ
tertiary granule lumen 1 LYZ
transport vesicle 1 INS
azurophil granule lumen 1 LYZ
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
clathrin-coated endocytic vesicle membrane 1 CD4
death-inducing signaling complex 1 CASP3
[Isoform 1]: Cell membrane 1 CD8A
Toll-like receptor 1-Toll-like receptor 2 protein complex 1 TLR2
Toll-like receptor 2-Toll-like receptor 6 protein complex 1 TLR2
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
T cell receptor complex 2 CD4, CD8A
complement component C1 complex 1 C1QA
complement component C1q complex 1 C1QA
extrinsic component of postsynaptic membrane 1 C1QA
extrinsic component of presynaptic membrane 1 C1QA
catalase complex 1 CAT
interleukin-6 receptor complex 1 IL6
apical cortex 1 FABP2
BAD-BCL-2 complex 1 BCL2
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

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  • Pengyun Wang, Baolong Zhao, Zhongtian Yin, Xin Gao, Mengyao Liu. Structure elucidation and anticancer activity of a heteropolysaccharide from white tea. Carbohydrate polymers. 2024 Jun; 333(?):121976. doi: 10.1016/j.carbpol.2024.121976. [PMID: 38494228]
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  • Junjie Wang, Enhui Liao, Zixuan Ren, Qiong Wang, Zenglai Xu, Shufang Wu, Chaoguang Yu, Yunlong Yin. Extraction and In Vitro Skincare Effect Assessment of Polysaccharides Extract from the Roots of Abelmoschus manihot (L.). Molecules (Basel, Switzerland). 2024 May; 29(9):. doi: 10.3390/molecules29092109. [PMID: 38731598]
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  • Wan-Tong Yu, Kang-Xin Hou, Xin-Yao Su, Xiao-Li Zhang, Jie Qiu, Cai-Xia Wang, Qiang Xue, Jin-Long Liu. [Cloning and expression analysis of UDP-rhamnose synthase from Citrus sinensis]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica. 2022 Jun; 47(12):3208-3214. doi: 10.19540/j.cnki.cjcmm.20220216.101. [PMID: 35851113]
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