Gibberellin A116 (BioDeep_00000004288)

   

human metabolite Exogenous natural product Plant Hormones


代谢物信息卡片


(1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0¹,⁹.0³,⁸]pentadecane-2,4-dicarboxylic acid

化学式: C20H28O4 (332.1987)
中文名称: 赤霉素A116
谱图信息: 最多检出来源 Homo sapiens(otcml) 21.69%

Reviewed

Last reviewed on 2024-10-09.

Cite this Page

Gibberellin A116. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China. https://query.biodeep.cn/s/gibberellin_a116 (retrieved 2024-12-22) (BioDeep RN: BioDeep_00000004288). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

分子结构信息

SMILES: C=C1CC23CC1CCC2C1(C)CCCC(C)(C(=O)O)C1C3C(=O)O
InChI: InChI=1S/C20H28O4/c1-11-9-20-10-12(11)5-6-13(20)18(2)7-4-8-19(3,17(23)24)15(18)14(20)16(21)22/h12-15H,1,4-10H2,2-3H3,(H,21,22)(H,23,24)/t12-,13+,14-,15+,18+,19-,20+/m1/s1

描述信息

Gibberellin a116, also known as ga12, is a member of the class of compounds known as c20-gibberellin 6-carboxylic acids. C20-gibberellin 6-carboxylic acids are c20-gibberellins with a carboxyl group at the 6-position. Thus, gibberellin a116 is considered to be an isoprenoid lipid molecule. Gibberellin a116 is practically insoluble (in water) and a weakly acidic compound (based on its pKa). Gibberellin a116 can be found in a number of food items such as rape, pigeon pea, chinese cabbage, and linden, which makes gibberellin a116 a potential biomarker for the consumption of these food products.
D006133 - Growth Substances > D010937 - Plant Growth Regulators > D005875 - Gibberellins

同义名列表

7 个代谢物同义名

(1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0¹,⁹.0³,⁸]pentadecane-2,4-dicarboxylic acid; Gibberellin A116; Gibberellin-a-12; gibberellin A12; Gibberellin 12; GA12; Gibberellin A12



数据库引用编号

17 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

309 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(309)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

77 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 8 ARHGEF1, CAT, EIF3M, GNAQ, NFKB1, PFDN6, PGP, SMAD2
Peripheral membrane protein 2 CYP1B1, HSD17B6
Endoplasmic reticulum membrane 5 CYP1B1, FZD6, POR, RAC2, SLC35B1
Nucleus 3 GNAQ, NFKB1, SMAD2
cytosol 7 ARHGEF1, CAT, EIF3M, NFKB1, POR, RAC2, SMAD2
dendrite 1 FZD4
nucleoplasm 2 NFKB1, SMAD2
Cell membrane 4 FZD4, FZD6, GNAQ, PCDHGA12
Lipid-anchor 1 GNAQ
Cytoplasmic side 1 POR
lamellipodium 1 RAC2
Early endosome membrane 1 HSD17B6
Multi-pass membrane protein 3 FZD4, FZD6, SLC35B1
Synapse 1 GNAQ
cell surface 3 FZD4, FZD6, WNT7A
glutamatergic synapse 2 FZD4, WNT7A
Golgi apparatus 1 GNAQ
Golgi membrane 1 SLC35B1
lysosomal membrane 1 GNAQ
Presynapse 1 WNT7A
plasma membrane 7 ARHGEF1, FZD4, FZD6, GNAQ, PCDHGA12, RAC2, WNT7A
Membrane 8 ARHGEF1, CAT, CYP1B1, FZD6, GNAQ, POR, SLC35B1, SMAD2
apical plasma membrane 1 FZD6
extracellular exosome 5 CAT, GNAQ, RAC2, VWF, WNT7A
Lumenal side 1 HSD17B6
endoplasmic reticulum 3 HSD17B6, POR, VWF
extracellular space 3 SCGB2A1, VWF, WNT7A
Schaffer collateral - CA1 synapse 1 WNT7A
apicolateral plasma membrane 1 FZD6
mitochondrion 3 CAT, CYP1B1, NFKB1
protein-containing complex 3 CAT, EIF3M, SMAD2
intracellular membrane-bounded organelle 5 CAT, CYP1B1, HSD17B6, POR, SLC35B1
Microsome membrane 2 CYP1B1, HSD17B6
Single-pass type I membrane protein 1 PCDHGA12
Secreted 3 SCGB2A1, VWF, WNT7A
extracellular region 4 CAT, NFKB1, VWF, WNT7A
Single-pass membrane protein 1 POR
mitochondrial outer membrane 1 RAC2
mitochondrial matrix 1 CAT
transcription regulator complex 2 NFKB1, SMAD2
photoreceptor outer segment 1 GNAQ
Nucleus membrane 1 GNAQ
nuclear membrane 1 GNAQ
Secreted, extracellular space, extracellular matrix 2 VWF, WNT7A
cell-cell junction 2 FZD4, PCDHGA12
Apical cell membrane 1 FZD6
focal adhesion 2 CAT, RAC2
extracellular matrix 2 VWF, WNT7A
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
collagen-containing extracellular matrix 1 VWF
chromatin 2 NFKB1, SMAD2
phagocytic vesicle membrane 1 RAC2
nuclear envelope 1 RAC2
heterotrimeric G-protein complex 1 GNAQ
Cytoplasmic vesicle membrane 1 FZD6
platelet alpha granule 1 VWF
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 2 CAT, NFKB1
Golgi lumen 1 WNT7A
endoplasmic reticulum lumen 1 WNT7A
platelet alpha granule lumen 1 VWF
eukaryotic 43S preinitiation complex 1 EIF3M
eukaryotic 48S preinitiation complex 1 EIF3M
eukaryotic translation initiation factor 3 complex 1 EIF3M
eukaryotic translation initiation factor 3 complex, eIF3m 1 EIF3M
specific granule lumen 1 NFKB1
endocytic vesicle membrane 1 WNT7A
clathrin-coated endocytic vesicle membrane 1 FZD4
heteromeric SMAD protein complex 1 SMAD2
SMAD protein complex 1 SMAD2
prefoldin complex 1 PFDN6
protein folding chaperone complex 1 PFDN6
RPAP3/R2TP/prefoldin-like complex 1 PFDN6
activin responsive factor complex 1 SMAD2
catalase complex 1 CAT
Weibel-Palade body 1 VWF
NADPH oxidase complex 1 RAC2
[Nuclear factor NF-kappa-B p105 subunit]: Cytoplasm 1 NFKB1
[Nuclear factor NF-kappa-B p50 subunit]: Nucleus 1 NFKB1
I-kappaB/NF-kappaB complex 1 NFKB1
NF-kappaB p50/p65 complex 1 NFKB1
homomeric SMAD protein complex 1 SMAD2


文献列表

  • C A Helliwell, P M Chandler, A Poole, E S Dennis, W J Peacock. The CYP88A cytochrome P450, ent-kaurenoic acid oxidase, catalyzes three steps of the gibberellin biosynthesis pathway. Proceedings of the National Academy of Sciences of the United States of America. 2001 Feb; 98(4):2065-70. doi: 10.1073/pnas.98.4.2065. [PMID: 11172076]