Cytidine (BioDeep_00000398587)

Main id: BioDeep_00000000364

 

natural product PANOMIX_OTCML-2023 BioNovoGene_Lab2019


代谢物信息卡片


Cytidine,cell culture tested

化学式: C9H13N3O5 (243.0855)
中文名称: 胞嘧啶核苷, 胞苷
谱图信息: 最多检出来源 Homo sapiens(blood) 33.67%

分子结构信息

SMILES: C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)O
InChI: InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)

描述信息

MS2 deconvoluted using MS2Dec from all ion fragmentation data, MetaboLights identifier MTBLS1040; UHDGCWIWMRVCDJ_STSL_0155_Cytidine_8000fmol_180506_S2_LC02_MS02_107; Spectrum acquired as described in Naz et al 2017 PMID 28641411. Preparation and submission to MassBank of North America by Chaleckis R. and Tada I.
MS2 deconvoluted using CorrDec from all ion fragmentation data, MetaboLights identifier MTBLS1040; Spectrum acquired as described in Naz et al 2017 PMID 28641411. Preparation and submission to MassBank of North America by Chaleckis R. and Tada I.
relative retention time with respect to 9-anthracene Carboxylic Acid is 0.054
relative retention time with respect to 9-anthracene Carboxylic Acid is 0.051
relative retention time with respect to 9-anthracene Carboxylic Acid is 0.053
Cytidine is a pyrimidine nucleoside and acts as a component of RNA. Cytidine is a precursor of uridine. Cytidine controls neuronal-glial glutamate cycling, affecting cerebral phospholipid metabolism, catecholamine synthesis, and mitochondrial function[1][2][3].
Cytidine is a pyrimidine nucleoside and acts as a component of RNA. Cytidine is a precursor of uridine. Cytidine controls neuronal-glial glutamate cycling, affecting cerebral phospholipid metabolism, catecholamine synthesis, and mitochondrial function[1][2][3].
Cytidine is a pyrimidine nucleoside and acts as a component of RNA. Cytidine is a precursor of uridine. Cytidine controls neuronal-glial glutamate cycling, affecting cerebral phospholipid metabolism, catecholamine synthesis, and mitochondrial function[1][2][3].

同义名列表

6 个代谢物同义名

Cytidine; Cytidine,cell culture tested; Cyd; Cytosine β-D-riboside; Cytosine-1-β-D-ribofuranoside; Cytidine



数据库引用编号

73 个数据库交叉引用编号

分类词条

78 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 15 AICDA, APOB, APOBEC1, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3F, APOBEC3G, APOBEC3H, DAG1, DCK, PRKN, SGCB, TP53, UCK2
Endosome membrane 1 APOB
Endoplasmic reticulum membrane 2 APOB, CD4
Nucleus 12 AICDA, APOBEC1, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3F, APOBEC3G, APOBEC3H, DCK, NAT10, PRKN, TP53
cytosol 11 AICDA, APOB, APOBEC3G, APOBEC3H, CDA, DAG1, DCK, DHODH, PRKN, TP53, UCK2
centrosome 1 TP53
nucleoplasm 9 APOBEC1, APOBEC3A, APOBEC3B, APOBEC3H, DAG1, DCK, DHODH, NAT10, TP53
Cell membrane 1 CD4
lamellipodium 1 DAG1
glutamatergic synapse 1 DAG1
Golgi apparatus 1 PRKN
mitochondrial inner membrane 1 DHODH
neuronal cell body 1 APOB
sarcolemma 2 DAG1, SGCB
smooth endoplasmic reticulum 1 APOB
Cytoplasm, cytosol 2 AICDA, PRKN
Presynapse 1 PRKN
plasma membrane 5 APOB, CD4, DAG1, IFNLR1, SGCB
Membrane 5 DAG1, DHODH, IFNLR1, NAT10, TP53
basolateral plasma membrane 1 DAG1
extracellular exosome 2 APOB, DAG1
endoplasmic reticulum 2 PRKN, TP53
extracellular space 2 APOB, DAG1
lysosomal lumen 1 APOB
perinuclear region of cytoplasm 1 PRKN
adherens junction 1 DAG1
mitochondrion 4 DCK, DHODH, PRKN, TP53
protein-containing complex 2 AICDA, TP53
intracellular membrane-bounded organelle 2 APOB, DAG1
filopodium 1 DAG1
postsynaptic density 1 PRKN
Single-pass type I membrane protein 2 CD4, IFNLR1
Secreted 1 APOB
extracellular region 3 APOB, CDA, DAG1
Mitochondrion outer membrane 1 PRKN
Single-pass membrane protein 1 DHODH
mitochondrial outer membrane 1 PRKN
Mitochondrion matrix 1 TP53
mitochondrial matrix 1 TP53
transcription regulator complex 1 TP53
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 1 TP53
external side of plasma membrane 2 CD4, DAG1
chylomicron 1 APOB
low-density lipoprotein particle 1 APOB
very-low-density lipoprotein particle 1 APOB
nucleolus 2 NAT10, TP53
midbody 1 NAT10
Cytoplasm, P-body 3 APOBEC3F, APOBEC3G, APOBEC3H
P-body 7 AICDA, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3F, APOBEC3G, APOBEC3H
Early endosome 2 APOB, CD4
Single-pass type II membrane protein 1 SGCB
postsynaptic membrane 1 DAG1
Cell membrane, sarcolemma 2 DAG1, SGCB
Mitochondrion inner membrane 1 DHODH
Membrane raft 1 CD4
Cytoplasm, cytoskeleton 2 SGCB, TP53
focal adhesion 1 DAG1
GABA-ergic synapse 1 DAG1
basement membrane 1 DAG1
Nucleus, PML body 1 TP53
PML body 1 TP53
collagen-containing extracellular matrix 1 DAG1
nuclear speck 1 PRKN
Postsynaptic cell membrane 1 DAG1
Cell projection, neuron projection 1 PRKN
neuron projection 1 PRKN
apolipoprotein B mRNA editing enzyme complex 3 APOBEC1, APOBEC3F, APOBEC3G
chromatin 1 TP53
cytoskeleton 2 DAG1, SGCB
Nucleus, nucleolus 1 NAT10
chromosome, telomeric region 1 NAT10
site of double-strand break 1 TP53
endosome lumen 1 APOB
Lipid droplet 1 APOB
Nucleus, nucleoplasm 1 DAG1
germ cell nucleus 1 TP53
replication fork 1 TP53
ubiquitin ligase complex 1 PRKN
plasma membrane raft 1 DAG1
ficolin-1-rich granule lumen 1 CDA
secretory granule lumen 1 CDA
Golgi lumen 1 DAG1
endoplasmic reticulum lumen 3 APOB, CD4, DAG1
nuclear matrix 1 TP53
transcription repressor complex 1 TP53
tertiary granule lumen 1 CDA
node of Ranvier 1 DAG1
small-subunit processome 1 NAT10
endoplasmic reticulum exit site 1 APOB
aggresome 1 PRKN
telomerase holoenzyme complex 1 NAT10
clathrin-coated endocytic vesicle membrane 2 APOB, CD4
ribonucleoprotein complex 2 APOBEC3F, APOBEC3G
[Isoform 1]: Nucleus 1 TP53
costamere 1 DAG1
dopaminergic synapse 1 PRKN
dystrophin-associated glycoprotein complex 2 DAG1, SGCB
sarcoglycan complex 1 SGCB
contractile ring 1 DAG1
Lewy body 1 PRKN
Parkin-FBXW7-Cul1 ubiquitin ligase complex 1 PRKN
postsynaptic cytosol 1 DAG1
mRNA editing complex 1 APOBEC1
nuclear periphery 1 DAG1
endocytic vesicle lumen 1 APOB
T cell receptor complex 1 CD4
chylomicron remnant 1 APOB
intermediate-density lipoprotein particle 1 APOB
mature chylomicron 1 APOB
photoreceptor ribbon synapse 1 DAG1
interleukin-28 receptor complex 1 IFNLR1
[Beta-dystroglycan]: Cell membrane 1 DAG1
dystroglycan complex 1 DAG1


文献列表

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  • Chen Wang, Guangming Ma, Shanqi Zhang, Kunhong Zhao, Xiangyang Li. Study on the binding of ningnanmycin to the helicase of Tobamovirus virus. Pesticide biochemistry and physiology. 2023 Aug; 194(?):105494. doi: 10.1016/j.pestbp.2023.105494. [PMID: 37532353]
  • Wenlei Wang, Huijie Liu, Feifei Wang, Xiaoye Liu, Yu Sun, Jie Zhao, Changhua Zhu, Lijun Gan, Jinping Yu, Claus-Peter Witte, Mingjia Chen. N4-acetylation of cytidine in (m)RNA plays essential roles in plants. The Plant cell. 2023 Jun; ?(?):. doi: 10.1093/plcell/koad189. [PMID: 37367221]
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