gomisin B (BioDeep_00000000217)

 

Secondary id: BioDeep_00000276674

PANOMIX_OTCML-2023


代谢物信息卡片


2-Butenoic acid, 2-methyl-, 5,6,7,8-tetrahydro-6-hydroxy-1,2,3,13-tetramethoxy-6,7-dimethylbenzo(3,4)cycloocta(1,2-f)(1,3)benzodioxol-5-yl ester, (5S-(5.alpha.(Z),6.beta.,7.beta.))-

化学式: C28H34O9 (514.2203)
中文名称: 五味子酯乙
谱图信息: 最多检出来源 unclassified Codonopsis(otcml) 91.93%

分子结构信息

SMILES: CC=C(C)C(=O)OC1C2=CC(=C(C(=C2C3=C(C4=C(C=C3CC(C1(C)O)C)OCO4)OC)OC)OC)OC
InChI: InChI=1S/C28H34O9/c1-9-14(2)27(29)37-26-17-12-18(31-5)22(32-6)25(34-8)21(17)20-16(10-15(3)28(26,4)30)11-19-23(24(20)33-7)36-13-35-19/h9,11-12,15,26,30H,10,13H2,1-8H3/b14-9-/t15-,26-,28-/m0/s1

描述信息

Gomisin B is a tannin.
Schisantherin B is a natural product found in Kadsura angustifolia, Schisandra rubriflora, and other organisms with data available.
See also: Schisandra chinensis fruit (part of).
Schisantherin B (Gomisin-B; Wuweizi ester-B; Schisantherin-B) is a natural product.
Schisantherin B (Gomisin-B; Wuweizi ester-B; Schisantherin-B) is a natural product.

同义名列表

22 个代谢物同义名

2-Butenoic acid, 2-methyl-, 5,6,7,8-tetrahydro-6-hydroxy-1,2,3,13-tetramethoxy-6,7-dimethylbenzo(3,4)cycloocta(1,2-f)(1,3)benzodioxol-5-yl ester, (5S-(5.alpha.(Z),6.beta.,7.beta.))-; 2-Butenoic acid, 2-methyl-, 5,6,7,8-tetrahydro-6-hydroxy-1,2,3,13-tetramethoxy-6,7-dimethylbenzo(3,4)cycloocta(1,2-f)(1,3)benzodioxol-5-yl ester, (5S-(5alpha(Z),6beta,7beta))-; [(8S,9S,10S)-9-hydroxy-3,4,5,19-tetramethoxy-9,10-dimethyl-15,17-dioxatetracyclo[10.7.0.02,7.014,18]nonadeca-1(19),2,4,6,12,14(18)-hexaen-8-yl] (Z)-2-methylbut-2-enoate; 2-BUTENOIC ACID, 2-METHYL-, (5S,6S,7S,13AS)-5,6,7,8-TETRAHYDRO-6-HYDROXY-1,2,3,13-TETRAMETHOXY-6,7-DIMETHYLBENZO(3,4)CYCLOOCTA(1,2-F)(1,3)BENZODIOXOL-5-YL ESTER, (2Z)-; 2-BUTENOIC ACID, 2-METHYL-, (5S,6S,7S,13AS)-5,6,7,8-TETRAHYDRO-6-HYDROXY-1,2,3,13-TETRAMETHOXY-6,7-DIMETHYLBENZO[3,4]CYCLOOCTA[1,2-F][1,3]BENZODIOXOL-5-YL ESTER, (2Z)-; 2-BUTENOICACID,2-METHYL-,(5S,6S,7S,13AS)-5,6,7,13A-TETRAHYDRO-6-HYDROXY-1,2,3,13-TETRAMETHOXY-6,7-DIMETHYLBENZO[3,4]CYCLOOCTA[1,2-F][1,3]BENZODIOXOL-5-YLESTER,(2Z)-; (5S,6S,7S)-6-hydroxy-1,2,3,13-tetramethoxy-6,7-dimethyl-5,6,7,8-tetrahydrobenzo[3,4]cycloocta[1,2:4,5]benzo[1,2-d][1,3]dioxol-5-yl (Z)-2-methylbut-2-enoate; (hydroxy-tetramethoxy-dimethyl-[?]yl) (Z)-2-methylbut-2-enoate; Schisantherin B; Schisantherin C; Wuweizi ester-B; Wuweizi ester B; Schizantherin-B; UNII-97ZTC185XV; Schizantherin B; schisandrer B; Schizandrol; 97ZTC185XV; gomisin B; Gomisin-B; Schisantherin-B; Gomisin B



数据库引用编号

17 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 14 CASP12, CYP3A4, DDIT3, EGFR, ESR1, HDAC1, MAPK1, MTOR, NFKB1, NR3C1, PIK3CA, PTGS1, PTGS2, TUBB4B
Peripheral membrane protein 4 ESR1, MTOR, PTGS1, PTGS2
Endosome membrane 1 EGFR
Endoplasmic reticulum membrane 6 CYP3A4, EGFR, MTOR, PTGS1, PTGS2, UGT1A1
Nucleus 11 DDIT3, EGFR, ESR1, HDAC1, MAPK1, MTOR, MYCN, NFKB1, NR1I2, NR3C1, TUBB4B
cytosol 9 DDIT3, ESR1, HDAC1, MAPK1, MTOR, NFKB1, NR3C1, PIK3CA, TUBB4B
dendrite 1 MTOR
nuclear body 1 NR1I2
phagocytic vesicle 1 MTOR
centrosome 2 MAPK1, NR3C1
nucleoplasm 8 ESR1, HDAC1, MAPK1, MTOR, MYCN, NFKB1, NR1I2, NR3C1
RNA polymerase II transcription regulator complex 1 DDIT3
Cell membrane 5 EGFR, ESR1, SLC1A3, SLCO1C1, TNF
Cytoplasmic side 2 ESR1, MTOR
lamellipodium 1 PIK3CA
ruffle membrane 1 EGFR
Early endosome membrane 1 EGFR
Multi-pass membrane protein 2 SLC1A3, SLCO1C1
Golgi apparatus membrane 1 MTOR
Synapse 3 MAPK1, NR3C1, SLC1A3
cell junction 1 EGFR
cell surface 3 EGFR, SLC1A3, TNF
glutamatergic synapse 1 EGFR
Golgi apparatus 3 ESR1, MAPK1, PTGS1
Golgi membrane 2 EGFR, MTOR
lysosomal membrane 1 MTOR
neuronal cell body 3 HDAC1, SLC1A3, TNF
Lysosome 1 MTOR
endosome 1 EGFR
plasma membrane 8 EGFR, ESR1, MAPK1, PIK3CA, SLC1A3, SLCO1C1, TNF, UGT1A1
Membrane 8 CYP3A4, EGFR, ESR1, MTOR, MYCN, NR3C1, SLC1A3, UGT1A1
apical plasma membrane 1 EGFR
basolateral plasma membrane 2 EGFR, SLCO1C1
caveola 2 MAPK1, PTGS2
extracellular exosome 2 PTGS1, TUBB4B
Lysosome membrane 1 MTOR
endoplasmic reticulum 3 CASP12, PTGS2, UGT1A1
extracellular space 2 EGFR, TNF
perinuclear region of cytoplasm 4 EGFR, PIK3CA, SLC1A3, UGT1A1
intercalated disc 1 PIK3CA
mitochondrion 3 MAPK1, NFKB1, NR3C1
protein-containing complex 5 EGFR, ESR1, HDAC1, NR3C1, PTGS2
intracellular membrane-bounded organelle 2 CYP3A4, PTGS1
Microsome membrane 4 CYP3A4, MTOR, PTGS1, PTGS2
TORC1 complex 1 MTOR
TORC2 complex 1 MTOR
Single-pass type I membrane protein 1 EGFR
extracellular region 4 MAPK1, NFKB1, TNF, TUBB4B
Mitochondrion outer membrane 1 MTOR
Single-pass membrane protein 1 UGT1A1
mitochondrial outer membrane 1 MTOR
mitochondrial matrix 1 NR3C1
transcription regulator complex 4 DDIT3, ESR1, NFKB1, NR1I2
photoreceptor outer segment 1 PTGS1
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 2 MAPK1, NR3C1
nuclear membrane 1 EGFR
external side of plasma membrane 1 TNF
Extracellular vesicle 1 TUBB4B
cytoplasmic vesicle 1 SLC1A3
microtubule cytoskeleton 1 TUBB4B
nucleolus 1 MYCN
Early endosome 1 MAPK1
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Cytoplasm, perinuclear region 1 UGT1A1
heterochromatin 1 HDAC1
Membrane raft 2 EGFR, TNF
Cell junction, focal adhesion 1 MAPK1
Cytoplasm, cytoskeleton 1 TUBB4B
Cytoplasm, cytoskeleton, spindle 2 MAPK1, NR3C1
focal adhesion 2 EGFR, MAPK1
microtubule 1 TUBB4B
spindle 2 MAPK1, NR3C1
intracellular vesicle 1 EGFR
Nucleus, PML body 1 MTOR
PML body 1 MTOR
nuclear speck 1 NR3C1
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 1 PTGS2
nuclear outer membrane 1 PTGS2
Late endosome 2 DDIT3, MAPK1
receptor complex 1 EGFR
neuron projection 3 PTGS1, PTGS2, SLC1A3
chromatin 7 DDIT3, ESR1, HDAC1, MYCN, NFKB1, NR1I2, NR3C1
phagocytic cup 1 TNF
mitotic spindle 2 MAPK1, TUBB4B
Chromosome 1 NR3C1
cytoskeleton 2 MAPK1, TUBB4B
intercellular bridge 1 TUBB4B
Cytoplasm, cytoskeleton, flagellum axoneme 1 TUBB4B
sperm flagellum 1 TUBB4B
nuclear envelope 1 MTOR
Endomembrane system 2 MTOR, PTGS1
Membrane, caveola 1 MAPK1
axonemal microtubule 1 TUBB4B
Nucleus, nucleoplasm 1 NR3C1
euchromatin 1 ESR1
pseudopodium 1 MAPK1
intermediate filament cytoskeleton 1 NR1I2
basal plasma membrane 2 EGFR, SLC1A3
synaptic membrane 1 EGFR
ficolin-1-rich granule lumen 1 MAPK1
secretory granule lumen 1 NFKB1
endoplasmic reticulum lumen 2 MAPK1, PTGS2
transcription repressor complex 1 HDAC1
phosphatidylinositol 3-kinase complex 1 PIK3CA
phosphatidylinositol 3-kinase complex, class IA 1 PIK3CA
specific granule lumen 1 NFKB1
histone deacetylase complex 1 HDAC1
azurophil granule lumen 2 MAPK1, TUBB4B
NuRD complex 1 HDAC1
clathrin-coated endocytic vesicle membrane 1 EGFR
[Isoform 1]: Nucleus 1 ESR1
Sin3-type complex 1 HDAC1
protein-DNA complex 1 DDIT3
Cytoplasmic vesicle, phagosome 1 MTOR
[Isoform Alpha]: Cytoplasm 1 NR3C1
multivesicular body, internal vesicle lumen 1 EGFR
Shc-EGFR complex 1 EGFR
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
[Isoform Beta]: Nucleus 1 NR3C1
[Isoform Alpha-B]: Nucleus 1 NR3C1
endoplasmic reticulum chaperone complex 1 UGT1A1
CHOP-C/EBP complex 1 DDIT3
CHOP-ATF3 complex 1 DDIT3
CHOP-ATF4 complex 1 DDIT3
[Nuclear factor NF-kappa-B p105 subunit]: Cytoplasm 1 NFKB1
[Nuclear factor NF-kappa-B p50 subunit]: Nucleus 1 NFKB1
I-kappaB/NF-kappaB complex 1 NFKB1
NF-kappaB p50/p65 complex 1 NFKB1
cytochrome complex 1 UGT1A1
NLRP1 inflammasome complex 1 CASP12
phosphatidylinositol 3-kinase complex, class IB 1 PIK3CA
membrane protein complex 1 SLC1A3
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Jinman Liu, Qihui Wu, Qiqing Wu, Guangcheng Zhong, Yong Liang, Yong Gu, Yunhui Hu, Wenjia Wang, Ning Hao, Shuhuan Fang, Weirong Li, Huafeng Pan, Qi Wang, Jiansong Fang. Modulating endoplasmic reticulum stress in APP/PS1 mice by Gomisin B and Osthole in Bushen-Yizhi formula: Synergistic effects and therapeutic implications for Alzheimer's disease. Phytomedicine : international journal of phytotherapy and phytopharmacology. 2023 Oct; 119(?):155023. doi: 10.1016/j.phymed.2023.155023. [PMID: 37586159]
  • Yinpeng Wang, Jingbo Zhu, Xinxin Du, Yumei Li. Simultaneous Extraction and Determination of Lignans from Schisandra chinensis (Turcz.) Baill. via Diol-Based Matrix Solid-Phase Dispersion with High-Performance Liquid Chromatography. Molecules (Basel, Switzerland). 2023 Sep; 28(18):. doi: 10.3390/molecules28186448. [PMID: 37764224]
  • Li-Jing Du, Xin-Ning Zhang, Sha-Sha Li, Yuan-Fang Sun, Hui-Zi Jin, Shi-Kai Yan, Chuan-Gang Han. Network pharmacological investigation into the mechanism of Kaixinsan powder for the treatment of depression. Metabolic brain disease. 2022 12; 37(8):2903-2914. doi: 10.1007/s11011-022-01067-5. [PMID: 36070047]
  • Jin-Man Liu, Jun-Mei Chen, Ming-Jun Lin, Fan-Chang Wu, Cui-Ru Ma, Xue Zuo, Wen-Qian Yu, Ming-Jun Huang, Jian-Song Fang, Wei-Rong Li, Qi Wang, Yong Liang. Screening and verification of CYP3A4 inhibitors from Bushen-Yizhi formula to enhance the bioavailability of osthole in rat plasma. Journal of ethnopharmacology. 2022 Jan; 282(?):114643. doi: 10.1016/j.jep.2021.114643. [PMID: 34534597]
  • B Poornima, Bandi Siva, A Venkanna, G Shankaraiah, Nishant Jain, Dharmendra Kumar Yadav, Sanjeev Misra, K Suresh Babu. Novel Gomisin B analogues as potential cytotoxic agents: Design, synthesis, biological evaluation and docking studies. European journal of medicinal chemistry. 2017 Oct; 139(?):441-453. doi: 10.1016/j.ejmech.2017.07.076. [PMID: 28818768]
  • Mengjie Xu, Yan Dong, Shutong Wan, Tingxu Yan, Jingdi Cao, Lidan Wu, Kaishun Bi, Ying Jia. Schisantherin B ameliorates Aβ1-42-induced cognitive decline via restoration of GLT-1 in a mouse model of Alzheimer's disease. Physiology & behavior. 2016 12; 167(?):265-273. doi: 10.1016/j.physbeh.2016.09.018. [PMID: 27660034]
  • Lian-lin Su, Xue Cheng, De Ji, Li-jun Wang, Xi-yan Ding, Tu-lin Lu, Chun-qin Mao, Ji Zhang. [Analysis of lignans and their metabolites derived from Schisandra chinensis and vinegar Schisandra chinensis in rats’ plasma, bile, urine and faeces based on UHPLC-QTOF/MS]. Yao xue xue bao = Acta pharmaceutica Sinica. 2016 10; 51(10):1600-8. doi: . [PMID: 29932608]
  • Rong Sun, Hong-Chuan Song, Chun-Ren Wang, Kai-Ze Shen, Yao-Bo Xu, Yan-Xiu Gao, Ye-Gao Chen, Jin-Yan Dong. Compounds from Kadsura angustifolia with anti-HIV activity. Bioorganic & medicinal chemistry letters. 2011 Feb; 21(3):961-5. doi: 10.1016/j.bmcl.2010.12.055. [PMID: 21232955]
  • Hiroshi Iwata, Yasuhiro Tezuka, Shigetoshi Kadota, Akira Hiratsuka, Tadashi Watabe. Identification and characterization of potent CYP3A4 inhibitors in Schisandra fruit extract. Drug metabolism and disposition: the biological fate of chemicals. 2004 Dec; 32(12):1351-8. doi: 10.1124/dmd.104.000646. [PMID: 15342469]
  • K T Liu, P Lesca. Pharmacological properties of Dibenzo[a,c]cyclooctene derivatives isolated from Fructus Schizandrae Chinensis III. Inhibitory effects on carbon tetrachloride-induced lipid peroxidation, metabolism and covalent binding of carbon tetrachloride to lipids. Chemico-biological interactions. 1982 Jul; 41(1):39-47. doi: 10.1016/0009-2797(82)90015-1. [PMID: 7094143]
  • K T Liu, P Lesca. Pharmacological properties of dibenzo[a,c]cyclooctene derivatives isolated from Fructus Schizandrae chinensis. I. Interaction with rat liver cytochrome P-450 and inhibition of xenobiotic metabolism and mutagenicity. Chemico-biological interactions. 1982 Apr; 39(3):301-14. doi: 10.1016/0009-2797(82)90047-3. [PMID: 7082441]
  • Y Ikeya, H Taguchi, I Yosioka, H Kobayashi. The constituents of Schizandra chinensis Baill. I. Isolation and structure determination of five new lignans, gomisin A, B, C, F and G, and the absolute structure of schizandrin. Chemical & pharmaceutical bulletin. 1979 Jun; 27(6):1383-94. doi: 10.1248/cpb.27.1383. [PMID: 544051]
  • C S Liu, S D Fang, M F Huang, Y L Kao, J S Hsu. Studies on the active principles of Schisandra sphenanthera Rehd. et Wils. The structures of schisantherin A, B, C, D, E, and the related compounds. Scientia Sinica. 1978 Jul; 21(4):483-502. doi: . [PMID: 233922]