(3Z)-Phycoerythrobilin (BioDeep_00000005994)

   


代谢物信息卡片


(3Z)-Phycoerythrobilin

化学式: C33H38N4O6 (586.2791208)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(feces) 0.08%

分子结构信息

SMILES: C/C=C\1/C(C)C(=O)N/C1=C\C1=N/C(=C\c2c(CCC(=O)O)c(C)c(CC3C(=C(C=C)C(=O)N3)C)[nH]2)/C(=C1C)CCC(=O)O
InChI: InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,14-15,19,26,34-35H,2,9-13H2,1,3-6H3,(H,36,43)(H,38,39)(H,40,41)/b20-7-,25-14-,29-15-/t19-,26-/m1/s1

描述信息

同义名列表

1 个代谢物同义名

(3Z)-Phycoerythrobilin



数据库引用编号

9 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Naoto Sato, Tomoe Furuta, Tomoyuki Takeda, Yoshikatsu Miyabe, Kazuhiro Ura, Yasuaki Takagi, Hajime Yasui, Yuya Kumagai, Hideki Kishimura. Antioxidant activity of proteins extracted from red alga dulse harvested in Japan. Journal of food biochemistry. 2019 02; 43(2):e12709. doi: 10.1111/jfbc.12709. [PMID: 31353655]
  • Berthold Borucki, Harald Otto, Gregor Rottwinkel, Jonathan Hughes, Maarten P Heyn, Tilman Lamparter. Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism. Biochemistry. 2003 Nov; 42(46):13684-97. doi: 10.1021/bi035511n. [PMID: 14622015]
  • Karsten Heyne, Johannes Herbst, Dietmar Stehlik, Berta Esteban, Tilman Lamparter, Jon Hughes, Rolf Diller. Ultrafast dynamics of phytochrome from the cyanobacterium synechocystis, reconstituted with phycocyanobilin and phycoerythrobilin. Biophysical journal. 2002 Feb; 82(2):1004-16. doi: 10.1016/s0006-3495(02)75460-x. [PMID: 11806940]
  • T Jiang, J P Zhang, W R Chang, D C Liang. Crystal structure of R-phycocyanin and possible energy transfer pathways in the phycobilisome. Biophysical journal. 2001 Aug; 81(2):1171-9. doi: 10.1016/s0006-3495(01)75774-8. [PMID: 11463658]
  • C M Park, J Y Shim, S S Yang, J G Kang, J I Kim, Z Luka, P S Song. Chromophore-apoprotein interactions in Synechocystis sp. PCC6803 phytochrome Cph1. Biochemistry. 2000 May; 39(21):6349-56. doi: 10.1021/bi992916s. [PMID: 10828948]
  • K H Zhao, M G Deng, M Zheng, M Zhou, A Parbel, M Storf, M Meyer, B Strohmann, H Scheer. Novel activity of a phycobiliprotein lyase: both the attachment of phycocyanobilin and the isomerization to phycoviolobilin are catalyzed by the proteins PecE and PecF encoded by the phycoerythrocyanin operon. FEBS letters. 2000 Mar; 469(1):9-13. doi: 10.1016/s0014-5793(00)01245-x. [PMID: 10708746]
  • L Li, J T Murphy, J C Lagarias. Continuous fluorescence assay of phytochrome assembly in vitro. Biochemistry. 1995 Jun; 34(24):7923-30. doi: 10.1021/bi00024a017. [PMID: 7794904]
  • M J Terry, M D Maines, J C Lagarias. Inactivation of phytochrome- and phycobiliprotein-chromophore precursors by rat liver biliverdin reductase. The Journal of biological chemistry. 1993 Dec; 268(35):26099-106. doi: . [PMID: 8253726]
  • R MacColl, D Guard-Friar, T J Ryan. Biliprotein light-harvesting strategies, phycoerythrin 566. Biochemistry. 1990 Jan; 29(2):430-5. doi: 10.1021/bi00454a018. [PMID: 2302383]
  • J C Lagarias, A V Klotz, J L Dallas, A N Glazer, J E Bishop, J F O'Connell, H Rapoport. Exclusive A-ring linkage for singly attached phycocyanobilins and phycoerythrobilins in phycobiliproteins. Absence of singly D-ring-linked bilins. The Journal of biological chemistry. 1988 Sep; 263(26):12977-85. doi: . [PMID: 3417648]
  • H J Hilderson, M J De Wolf, A R Lagrou, W S Dierick. Subcellular structure of bovine thyroid gland. A study on bovine thyroid membranes by buoyant-density-gradient centrifugation in a B-XIV zonal rotor. The Biochemical journal. 1975 Dec; 152(3):601-7. doi: 10.1042/bj1520601. [PMID: 5997]
  • P OCARRA, C OHEOCHA, D M CARRROLL. SPECTRAL PROPERTIES OF THE PHYCOBILINS. II. PHYCOERYTHROBILIN. Biochemistry. 1964 Sep; 3(?):1343-50. doi: 10.1021/bi00897a026. [PMID: 14229679]