Genipin (BioDeep_00000000264)

Main id: BioDeep_00000403242

Secondary id: BioDeep_00000867206

PANOMIX_OTCML-2023


代谢物信息卡片


Methyl (1S,4aS,7aS)-7-(hydroxymethyl)-1-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-((((2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)methyl)tetrahydro-2H-pyran-2-yl)oxy)-1,4a,5,7a-tetrahydrocyclopenta[c]pyran-4-carboxylate

化学式: C23H34O15 (550.1898)
中文名称: 京尼平-1-β-D-龙胆双糖苷, 京尼平龙胆双糖苷
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: COC(=O)C1=COC(C2C1CC=C2CO)OC3C(C(C(C(O3)COC4C(C(C(C(O4)CO)O)O)O)O)O)O
InChI: InChI=1S/C23H34O15/c1-33-20(32)10-6-34-21(13-8(4-24)2-3-9(10)13)38-23-19(31)17(29)15(27)12(37-23)7-35-22-18(30)16(28)14(26)11(5-25)36-22/h2,6,9,11-19,21-31H,3-5,7H2,1H3/t9-,11-,12-,13-,14-,15-,16+,17+,18-,19-,21+,22-,23+/m1/s1

描述信息

Genipin 1-beta-gentiobioside is a terpene glycoside.
Genipin 1-gentiobioside is a natural product found in Gardenia jasminoides and Genipa americana with data available.
Genipin 1-β-D-gentiobioside (Genipin 1-gentiobioside) is one of the most abundant and bioactive iridoid glycosides in Gardenia jasminoides Ellis, which possesses hepatoprotective, anti-inflammatory, antioxidant, and antithrombotic activities.
Genipin 1-β-D-gentiobioside (Genipin 1-gentiobioside) is one of the most abundant and bioactive iridoid glycosides in Gardenia jasminoides Ellis, which possesses hepatoprotective, anti-inflammatory, antioxidant, and antithrombotic activities.

同义名列表

28 个代谢物同义名

Methyl (1S,4aS,7aS)-7-(hydroxymethyl)-1-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-((((2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)methyl)tetrahydro-2H-pyran-2-yl)oxy)-1,4a,5,7a-tetrahydrocyclopenta[c]pyran-4-carboxylate; methyl (1S,4aS,7aS)-7-(hydroxymethyl)-1-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxy-1,4a,5,7a-tetrahydrocyclopenta[c]pyran-4-carboxylate; Cyclopenta(c)pyran-4-carboxylic acid, 1-((6-O-beta-D-glucopyranosyl-beta-D-glucopyranosyl)oxy)-1,4a,5,7a-tetrahydro-7-(hydroxymethyl)-, methyl ester, (1R-(1alpha,4aalpha,7aalpha))-; CYCLOPENTA(C)PYRAN-4-CARBOXYLIC ACID, 1-((6-O-.BETA.-D-GLUCOPYRANOSYL-.BETA.-D-GLUCOPYRANOSYL)OXY)-1,4A,5,7A-TETRAHYDRO-7-(HYDROXYMETHYL)-, METHYL ESTER, (1S,4AS,7AS)-; Genipin 1-gentiobioside; Genipin 1--gentiobioside; Genipin gentiobioside; GENIPIN 1-O-.BETA.-D-GENTIOBIOSIDE; Genipin 1-o-beta-D-gentiobioside; GENIPIN 1-.BETA.-D-GENTIOBIOSIDE; GENIPIN 1-.BETA.-GENTIOBIOSIDE; Genipin 1-beta-D-gentiobioside; Genipin 1-|A-D-gentiobioside; genipin 1-beta-gentiobioside; Genipin 1-β-D-gentiobioside; Genipin 1-b-D-gentiobioside; genipin-1-b-D-gentiobioside; Genipin 1--D-gentiobioside; Genipin 1-b-gentiobioside; GENIPIN 1-O-GENTIOBIOSIDE; Genipin-1-O-gentiobioside; Genipin 1-gentiobioside; genipin gentiobioside; Genipin-gentiobioside; UNII-0NI5399RDZ; 0NI5399RDZ; Genipin; GBGB; Genipin 1-β-gentiobioside; Genipin 1-beta-gentiobioside



数据库引用编号

17 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 15 AIMP2, BCL2, CASP3, EGFR, FABP1, MARVELD1, NLRP3, NOS1, NOS2, NOS3, PPARG, PRKAA2, PTGS2, SIRT1, VEGFA
Peripheral membrane protein 2 NOS1, PTGS2
Endosome membrane 1 EGFR
Endoplasmic reticulum membrane 4 BCL2, EGFR, HMOX1, PTGS2
Nucleus 15 AIMP2, BCL2, CASP3, EGFR, FABP1, HMOX1, MARVELD1, NLRP3, NOS1, NOS2, NOS3, PPARG, PRKAA2, SIRT1, VEGFA
cytosol 12 AIMP2, BCL2, CASP3, FABP1, HMOX1, NLRP3, NOS1, NOS2, NOS3, PPARG, PRKAA2, SIRT1
dendrite 2 MAOB, PRKAA2
nucleoplasm 9 CASP3, FABP1, HMOX1, NOS1, NOS2, NOS3, PPARG, PRKAA2, SIRT1
RNA polymerase II transcription regulator complex 1 PPARG
Cell membrane 3 EGFR, MARVELD1, TNF
Cytoplasmic side 2 HMOX1, MAOB
ruffle membrane 1 EGFR
Early endosome membrane 1 EGFR
Multi-pass membrane protein 1 MARVELD1
Golgi apparatus membrane 1 NLRP3
Synapse 1 NOS1
cell junction 1 EGFR
cell surface 3 EGFR, TNF, VEGFA
glutamatergic synapse 2 CASP3, EGFR
Golgi apparatus 3 NOS3, PRKAA2, VEGFA
Golgi membrane 3 EGFR, NLRP3, NOS3
lysosomal membrane 1 EGF
neuronal cell body 4 CASP3, MAOB, PRKAA2, TNF
sarcolemma 1 NOS1
Cytoplasm, cytosol 3 AIMP2, NLRP3, NOS2
endosome 1 EGFR
plasma membrane 7 EGF, EGFR, MARVELD1, NOS1, NOS2, NOS3, TNF
Membrane 9 AIMP2, BCL2, EGF, EGFR, HMOX1, MARVELD1, NLRP3, PRKAA2, VEGFA
apical plasma membrane 1 EGFR
axon 1 PRKAA2
basolateral plasma membrane 1 EGFR
caveola 2 NOS3, PTGS2
extracellular exosome 3 EGF, FABP1, LYZ
endoplasmic reticulum 5 BCL2, HMOX1, NLRP3, PTGS2, VEGFA
extracellular space 6 EGF, EGFR, HMOX1, LYZ, TNF, VEGFA
perinuclear region of cytoplasm 6 EGFR, HMOX1, NOS1, NOS2, NOS3, PPARG
adherens junction 1 VEGFA
mitochondrion 5 BCL2, MAOB, NLRP3, NOS1, SIRT1
protein-containing complex 5 BCL2, EGFR, FABP1, NOS1, PTGS2
intracellular membrane-bounded organelle 1 PPARG
Microsome membrane 1 PTGS2
postsynaptic density 2 CASP3, NOS1
chromatin silencing complex 1 SIRT1
Single-pass type I membrane protein 1 EGFR
Secreted 2 NLRP3, VEGFA
extracellular region 5 EGF, LYZ, NLRP3, TNF, VEGFA
Mitochondrion outer membrane 2 BCL2, MAOB
Single-pass membrane protein 1 BCL2
mitochondrial outer membrane 3 BCL2, HMOX1, MAOB
photoreceptor inner segment 1 NOS1
Nucleus membrane 1 BCL2
Bcl-2 family protein complex 1 BCL2
nuclear membrane 2 BCL2, EGFR
external side of plasma membrane 1 TNF
Secreted, extracellular space, extracellular matrix 1 VEGFA
dendritic spine 1 NOS1
nucleolus 1 SIRT1
Cytoplasm, P-body 2 NOS2, NOS3
P-body 2 NOS2, NOS3
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Cell membrane, sarcolemma 1 NOS1
Cytoplasm, perinuclear region 2 NOS1, NOS2
heterochromatin 1 SIRT1
Membrane raft 3 EGFR, NOS1, TNF
pore complex 1 BCL2
Cytoplasm, cytoskeleton 1 MARVELD1
focal adhesion 1 EGFR
extracellular matrix 1 VEGFA
Peroxisome 1 NOS2
intracellular vesicle 1 EGFR
sarcoplasmic reticulum 1 NOS1
peroxisomal matrix 2 FABP1, NOS2
Cell projection, dendritic spine 1 NOS1
Nucleus, PML body 1 SIRT1
PML body 1 SIRT1
secretory granule 1 VEGFA
nuclear speck 1 PRKAA2
Cytoplasm, cytoskeleton, microtubule organizing center 1 NLRP3
Inflammasome 1 NLRP3
interphase microtubule organizing center 1 NLRP3
NLRP3 inflammasome complex 1 NLRP3
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 2 PTGS2, SIRT1
nuclear outer membrane 1 PTGS2
receptor complex 2 EGFR, PPARG
neuron projection 1 PTGS2
chromatin 2 PPARG, SIRT1
phagocytic cup 1 TNF
cell periphery 1 NOS1
cytoskeleton 3 MARVELD1, NOS1, NOS3
fibrillar center 1 SIRT1
nuclear envelope 1 SIRT1
Endomembrane system 1 NLRP3
microtubule organizing center 1 NLRP3
Cytoplasm, Stress granule 1 NOS3
cytoplasmic stress granule 2 NOS3, PRKAA2
euchromatin 1 SIRT1
myelin sheath 1 BCL2
basal plasma membrane 1 EGFR
synaptic membrane 1 EGFR
endoplasmic reticulum lumen 1 PTGS2
platelet alpha granule lumen 2 EGF, VEGFA
specific granule lumen 1 LYZ
tertiary granule lumen 1 LYZ
endocytic vesicle membrane 1 NOS3
azurophil granule lumen 1 LYZ
mitochondrial envelope 1 MAOB
Single-pass type IV membrane protein 2 HMOX1, MAOB
clathrin-coated endocytic vesicle membrane 2 EGF, EGFR
death-inducing signaling complex 1 CASP3
eNoSc complex 1 SIRT1
rDNA heterochromatin 1 SIRT1
aminoacyl-tRNA synthetase multienzyme complex 1 AIMP2
nucleotide-activated protein kinase complex 1 PRKAA2
multivesicular body, internal vesicle lumen 1 EGFR
Shc-EGFR complex 1 EGFR
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
cortical cytoskeleton 1 NOS2
apical cortex 1 FABP1
BAD-BCL-2 complex 1 BCL2
[N-VEGF]: Cytoplasm 1 VEGFA
[VEGFA]: Secreted 1 VEGFA
[Isoform L-VEGF189]: Endoplasmic reticulum 1 VEGFA
[Isoform VEGF121]: Secreted 1 VEGFA
[Isoform VEGF165]: Secreted 1 VEGFA
VEGF-A complex 1 VEGFA
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
[SirtT1 75 kDa fragment]: Cytoplasm 1 SIRT1


文献列表

  • Ao-Xue Wang, Guang-Bo Ge, Xiao-Yi Qi, Ying Hu, Si-Cheng Liang, Ling Yang, Cai-Xia Tu. Rapid profiling and target analysis of principal components in Fuling Decoctions by UFLC-DAD-ESI-MS. Fitoterapia. 2010 Sep; 81(6):662-7. doi: 10.1016/j.fitote.2010.03.016. [PMID: 20362035]