3-deoxy-D-manno-octulosonate (BioDeep_00001869711)

Main id: BioDeep_00000004607

 


代谢物信息卡片


3-deoxy-D-manno-octulosonate

化学式: C8H14O8 (238.0689)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C(C(C(C(C(CO)O)O)O)O)C(=O)C(=O)O
InChI: InChI=1S/C8H14O8/c9-2-5(12)7(14)6(13)3(10)1-4(11)8(15)16/h3,5-7,9-10,12-14H,1-2H2,(H,15,16)/t3-,5-,6-,7-/m1/s1

描述信息

同义名列表

2 个代谢物同义名

3-deoxy-D-manno-octulosonate; 3-Deoxy-D-manno-octulosonate



数据库引用编号

9 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 BPI, CBS, ELP3, GPI, HTT, IARS1
Peripheral membrane protein 1 ERVW-1
Endosome membrane 1 HTT
Nucleus 4 CBS, ELP3, HTT, RBL2
autophagosome 1 HTT
cytosol 6 CBS, ELP3, GPI, HTT, IARS1, RBL2
dendrite 1 HTT
nucleoplasm 4 CD2, HTT, IARS1, RBL2
Cell membrane 2 CD2, HTT
Multi-pass membrane protein 1 HTT
Synapse 1 HTT
cell surface 2 CD2, LBP
Golgi apparatus 2 CD2, HTT
presynaptic membrane 1 HTT
Cytoplasm, cytosol 1 IARS1
plasma membrane 3 CD2, ERVW-1, HTT
Membrane 4 BPI, GPI, IARS1, LBP
axon 1 HTT
extracellular exosome 6 BPI, GPI, IARS1, LBP, LYZ, RBL2
endoplasmic reticulum 1 HTT
extracellular space 4 BPI, GPI, LBP, LYZ
perinuclear region of cytoplasm 1 HTT
protein-containing complex 2 CD2, HTT
Single-pass type I membrane protein 2 CD2, ERVW-1
Secreted 3 BPI, GPI, LBP
extracellular region 5 BPI, CD2, GPI, LBP, LYZ
cytoplasmic side of plasma membrane 1 CD2
transcription regulator complex 1 RBL2
ciliary membrane 1 GPI
external side of plasma membrane 1 CD2
nucleolus 2 ELP3, RBL2
Early endosome 1 HTT
cell-cell junction 1 CD2
postsynaptic membrane 1 HTT
Membrane raft 1 HTT
Cell junction, focal adhesion 1 HTT
focal adhesion 1 HTT
Late endosome 1 HTT
Cell projection, neuron projection 1 HTT
neuron projection 1 HTT
chromatin 1 RBL2
Chromosome 1 RBL2
centriole 1 HTT
Endomembrane system 1 HTT
Cytoplasmic vesicle membrane 1 HTT
ficolin-1-rich granule lumen 1 GPI
secretory granule lumen 1 GPI
specific granule lumen 2 BPI, LYZ
tertiary granule lumen 1 LYZ
azurophil granule lumen 2 BPI, LYZ
[Isoform 2]: Cytoplasm 1 ELP3
[Isoform 1]: Nucleus 1 ELP3
[Transmembrane protein]: Cell membrane 1 ERVW-1
[Surface protein]: Cell membrane 1 ERVW-1
aminoacyl-tRNA synthetase multienzyme complex 1 IARS1
postsynaptic cytosol 1 HTT
presynaptic cytosol 1 HTT
elongator holoenzyme complex 1 ELP3
inclusion body 1 HTT
Cytoplasmic granule membrane 2 BPI, LBP
serotonergic synapse 1 HTT
[Huntingtin]: Cytoplasm 1 HTT
[Huntingtin, myristoylated N-terminal fragment]: Cytoplasmic vesicle, autophagosome 1 HTT
[Syncytin-1]: Virion 1 ERVW-1


文献列表

  • Akintunde Emiola, Steven S Andrews, Carolin Heller, John George. Crosstalk between the lipopolysaccharide and phospholipid pathways during outer membrane biogenesis in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar; 113(11):3108-13. doi: 10.1073/pnas.1521168113. [PMID: 26929331]
  • Tetsuto Nakagawa, Yoshimi Shimada, Nadejda V Pavlova, Su-Chen Li, Yu-Teh Li. Cloning and expression of 3-deoxy-d-manno-oct-2-ulosonic acid α-ketoside hydrolase from oyster hepatopancreas†. Glycobiology. 2015 Dec; 25(12):1431-40. doi: 10.1093/glycob/cwv074. [PMID: 26362869]
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  • Malin Vonkavaara, Shaikh Terkis Islam Pavel, Kathrin Hölzl, Roland Nordfelth, Anders Sjöstedt, Svenja Stöven. Francisella is sensitive to insect antimicrobial peptides. Journal of innate immunity. 2013; 5(1):50-9. doi: 10.1159/000342468. [PMID: 23037919]
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  • Ken Shiraiwa, Shen Yuan, Ayako Fujiyama, Yosuke Matsuo, Takashi Tanaka, Zhi-Hong Jiang, Isao Kouno. Benzyl benzoate glycoside and 3-deoxy-D-manno-2-octulosonic acid derivatives from Solidago decurrens. Journal of natural products. 2012 Jan; 75(1):88-92. doi: 10.1021/np2007582. [PMID: 22185651]
  • Maor Bar-Peled, Breeanna R Urbanowicz, Malcolm A O'Neill. The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II - Insights from Nucleotide Sugar Formation and Diversity. Frontiers in plant science. 2012; 3(?):92. doi: 10.3389/fpls.2012.00092. [PMID: 22639675]
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  • Masaru Kobayashi, Nagisa Kouzu, Akina Inami, Kiminori Toyooka, Yuki Konishi, Ken Matsuoka, Toru Matoh. Characterization of Arabidopsis CTP:3-deoxy-D-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis. Plant & cell physiology. 2011 Oct; 52(10):1832-43. doi: 10.1093/pcp/pcr120. [PMID: 21893514]
  • Yasunori Isshiki, Seiichi Kondo. Characterization of the carbohydrate backbone of Vibrio parahaemolyticus O6 lipopolysaccharides. Microbiology and immunology. 2011 Aug; 55(8):539-51. doi: 10.1111/j.1348-0421.2011.00355.x. [PMID: 21639862]
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  • Vandana Chandan, Susan M Logan, Blair A Harrison, Evgenii Vinogradov, Annie Aubry, Jacek Stupak, Jianjun Li, Eleonora Altman. Characterization of a waaF mutant of Helicobacter pylori strain 26695 provides evidence that an extended lipopolysaccharide structure has a limited role in the invasion of gastric cancer cells. Biochemistry and cell biology = Biochimie et biologie cellulaire. 2007 Oct; 85(5):582-90. doi: 10.1139/o07-056. [PMID: 17901900]
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