Phycocyanobilin (BioDeep_00000005950)
Secondary id: BioDeep_00001870474
代谢物信息卡片
化学式: C33H38N4O6 (586.2791208)
中文名称: 藻蓝素
谱图信息:
最多检出来源 Macaca mulatta(otcml) 0.17%
Last reviewed on 2024-07-12.
Cite this Page
Phycocyanobilin. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China.
https://query.biodeep.cn/s/phycocyanobilin (retrieved
2024-11-03) (BioDeep RN: BioDeep_00000005950). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
分子结构信息
SMILES: CC=C1C(=CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(CC)=C4C)c(C)c3CCC(=O)O)C(CCC(=O)O)=C2C)NC(=O)C1C
InChI: InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7,13-15,19,34-35H,8-12H2,1-6H3,(H,37,42)(H,38,39)(H,40,41)/b20-7+,24-13+,27-14-,28-15-
描述信息
Phycocyanobilin is a linear, open-chain tetrapyrrole pigment that belongs to the family of bilins. It serves as a chromophore in various phytochrome photoreceptors found in cyanobacteria, as well as in the chlorosomes of green sulfur bacteria. Phycocyanobilin is a key component of phycobiliproteins, which are water-soluble pigments involved in light harvesting during photosynthesis.
**Chemical Structure:**
Phycocyanobilin has a molecular formula of C33H36N4O6 and a molecular weight of approximately 596.67 g/mol. Structurally, it consists of a porphyrin backbone with four pyrrole rings connected by methine bridges. The pyrrole rings contain nitrogen atoms that coordinate a central magnesium ion in phycobiliproteins. Unlike chlorophyll, phycocyanobilin has an open-chain structure due to the presence of a double bond between the C-20 and C-21 positions of the macrocyclic ring, which prevents it from forming a fully circular porphyrin ring.
**Properties:**
- **Color:** Phycocyanobilin imparts a blue color to the phycobiliproteins in which it is bound. The specific color is due to the electronic structure of the phycocyanobilin molecule, which allows it to absorb light in the red region of the visible spectrum, typically around 620-630 nm.
- **Solubility:** Unlike many other pigments, phycocyanobilin is water-soluble due to its binding to phycobiliproteins, which enhances its functionality in the thylakoid membranes of cyanobacteria.
- **Chemical Reactivity:** Phycocyanobilin can be isomerized and oxidized to form other bilins, such as phycoerythrobilin and phycourobilin, which have different spectral properties and can be found in different phycobiliproteins.
**Biological Role:**
Phycocyanobilin plays a critical role in the photosynthetic process of cyanobacteria and certain green sulfur bacteria. Its primary functions include:
- **Light Harvesting:** In phycobiliproteins like phycocyanin, phycocyanobilin serves as a light-harvesting antenna. It absorbs light energy and transfers it to the photosynthetic reaction centers, where it is used to drive the synthesis of ATP and NADPH.
- **Photoregulation:** In cyanobacteria, phycocyanobilin is also involved in the regulation of photosynthesis through the action of phytochrome-like photoreceptors. These photoreceptors can switch between a Pr (red-absorbing) and a Pfr (far-red-absorbing) form in response to light, regulating gene expression and various metabolic processes.
**Synthesis:**
Phycocyanobilin is synthesized from the amino acid L-arginine through a series of enzymatic reactions that include the production of 5-aminolevulinic acid (ALA), which is then transformed into protoporphyrin IX. The protoporphyrin IX is subsequently modified to form phycocyanobilin, a process that involves the removal of the macrocyclic ring and the introduction of the double bond at the C-20 and C-21 positions.
In summary, phycocyanobilin is an essential pigment for the photosynthetic apparatus of certain photosynthetic organisms, contributing to their ability to capture and utilize light energy for the production of organic compounds. Its unique structure and properties allow it to perform a variety of functions that are critical to the survival and ecological success of these organisms.
同义名列表
数据库引用编号
16 个数据库交叉引用编号
- ChEBI: CHEBI:47957
- ChEBI: CHEBI:15617
- ChEBI: CHEBI:47955
- KEGG: C05786
- PubChem: 20055378
- PubChem: 54611329
- PubChem: 365902
- PubChem: 5280816
- ChEMBL: CHEMBL2003283
- CAS: 20298-86-6
- PMhub: MS000186959
- PMhub: MS000125120
- PMhub: MS000111872
- PMhub: MS000018864
- 3DMET: B01894
- NIKKAJI: J2.759.269D
分类词条
相关代谢途径
Reactome(0)
BioCyc(0)
PlantCyc(0)
代谢反应
1 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(1)
- phycocyanobilin biosynthesis:
H+ + O2 + a reduced [NADPH-hemoprotein reductase] + ferroheme b ⟶ Fe2+ + H2O + an oxidized [NADPH-hemoprotein reductase] + biliverdin-IX-α + carbon monoxide
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
0 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:
- PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。
文献列表
- Yi Li. The Bioactivities of Phycocyanobilin from Spirulina.
Journal of immunology research.
2022; 2022(?):4008991. doi:
10.1155/2022/4008991
. [PMID: 35726224] - Manisha Banerjee, Prakash Kalwani, Dhiman Chakravarty, Beena Singh, Anand Ballal. Functional and mechanistic insights into the differential effect of the toxicant 'Se(IV)' in the cyanobacterium Anabaena PCC 7120.
Aquatic toxicology (Amsterdam, Netherlands).
2021 Jul; 236(?):105839. doi:
10.1016/j.aquatox.2021.105839
. [PMID: 34015754] - Takanari Kamo, Toshihiko Eki, Yuu Hirose. Pressurized Liquid Extraction of a Phycocyanobilin Chromophore and Its Reconstitution with a Cyanobacteriochrome Photosensor for Efficient Isotopic Labeling.
Plant & cell physiology.
2021 May; 62(2):334-347. doi:
10.1093/pcp/pcaa164
. [PMID: 33386854] - Erick Garcia-Pliego, Margarita Franco-Colin, Plácido Rojas-Franco, Vanessa Blas-Valdivia, Jose Ivan Serrano-Contreras, Giselle Pentón-Rol, Edgar Cano-Europa. Phycocyanobilin is the molecule responsible for the nephroprotective action of phycocyanin in acute kidney injury caused by mercury.
Food & function.
2021 Apr; 12(7):2985-2994. doi:
10.1039/d0fo03294h
. [PMID: 33704296] - Giselle Pentón-Rol, Javier Marín-Prida, Mark F McCarty. C-Phycocyanin-derived Phycocyanobilin as a Potential Nutraceutical Approach for Major Neurodegenerative Disorders and COVID-19- induced Damage to the Nervous System.
Current neuropharmacology.
2021; 19(12):2250-2275. doi:
10.2174/1570159x19666210408123807
. [PMID: 33829974] - Beatriz Piniella- Matamoros, Javier Marin- Prida, Giselle Penton- Rol. Nutraceutical and therapeutic potential of Phycocyanobilin for treating Alzheimer's disease.
Journal of biosciences.
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The Plant journal : for cell and molecular biology.
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Life sciences.
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Proceedings of the National Academy of Sciences of the United States of America.
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The Journal of biological chemistry.
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Food & function.
2013 Nov; 4(11):1586-94. doi:
10.1039/c3fo60230c
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2013 Feb; 110(9):3621-6. doi:
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American journal of physiology. Regulatory, integrative and comparative physiology.
2013 Jan; 304(2):R110-20. doi:
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Molecular plant.
2012 May; 5(3):698-715. doi:
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. [PMID: 22419823] - Rui Yang, Kaori Nishiyama, Ayumi Kamiya, Yutaka Ukaji, Katsuhiko Inomata, Tilman Lamparter. Assembly of synthetic locked phycocyanobilin derivatives with phytochrome in vitro and in vivo in Ceratodon purpureus and Arabidopsis.
The Plant cell.
2012 May; 24(5):1936-51. doi:
10.1105/tpc.111.094656
. [PMID: 22582099] - Mark F McCarty. Marinobufagenin and cyclic strain may activate endothelial NADPH oxidase, contributing to the adverse impact of salty diets on vascular and cerebral health.
Medical hypotheses.
2012 Feb; 78(2):191-6. doi:
10.1016/j.mehy.2011.09.028
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Biochemistry.
2011 Dec; 50(51):10987-9. doi:
10.1021/bi201504a
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Plant & cell physiology.
2011 Dec; 52(12):2214-24. doi:
10.1093/pcp/pcr155
. [PMID: 22065076] - Angela Strambi, Bo Durbeej. Initial excited-state relaxation of the bilin chromophores of phytochromes: a computational study.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
2011 Apr; 10(4):569-79. doi:
10.1039/c0pp00307g
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The journal of physical chemistry. B.
2011 Feb; 115(5):1220-31. doi:
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. [PMID: 21192668] - Serena Benedetti, Francesca Benvenuti, Stefano Scoglio, Franco Canestrari. Oxygen radical absorbance capacity of phycocyanin and phycocyanobilin from the food supplement Aphanizomenon flos-aquae.
Journal of medicinal food.
2010 Feb; 13(1):223-7. doi:
10.1089/jmf.2008.0257
. [PMID: 20136460] - Mark F McCarty, Jorge Barroso-Aranda, Francisco Contreras. Genistein and phycocyanobilin may prevent hepatic fibrosis by suppressing proliferation and activation of hepatic stellate cells.
Medical hypotheses.
2009 Mar; 72(3):330-2. doi:
10.1016/j.mehy.2008.07.045
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Plant & cell physiology.
2007 Sep; 48(9):1385-90. doi:
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