Coproporphyrinogen III (BioDeep_00000005155)

 

Secondary id: BioDeep_00001868624

human metabolite PANOMIX_OTCML-2023 Endogenous blood metabolite


代谢物信息卡片


3-[9,14,20-tris(2-carboxyethyl)-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1(20),3,5,8,10,13,15,18-octaen-4-yl]propanoic acid

化学式: C36H44N4O8 (660.3159)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(blood) 9.7%

分子结构信息

SMILES: CC1=C2CC3=C(C(=C(N3)CC4=C(C(=C(N4)CC5=C(C(=C(N5)CC(=C1CCC(=O)O)N2)C)CCC(=O)O)C)CCC(=O)O)CCC(=O)O)C
InChI: InChI=1S/C36H44N4O8/c1-17-21(5-9-33(41)42)29-14-27-19(3)22(6-10-34(43)44)30(39-27)15-28-20(4)24(8-12-36(47)48)32(40-28)16-31-23(7-11-35(45)46)18(2)26(38-31)13-25(17)37-29/h37-40H,5-16H2,1-4H3,(H,41,42)(H,43,44)(H,45,46)(H,47,48)

描述信息

Coproporphyrinogen III is a porphyrin metabolite arising from heme synthesis. Porphyrins are pigments found in both animal and plant life. Coproporphyrinogen III is a tetrapyrrole dead-end product resulting from the spontaneous oxidation of the methylene bridges of coproporphyrinogen arising from heme synthesis. It is secreted in feces and urine. Coproporphyrinogen III is biosynthesized from the tetrapyrrole hydroxymethylbilane, which is converted by the action of uroporphyrinogen III synthase to uroporphyrinogen III. Uroporphyrinogen III is subsequently converted into coproporphyrinogen III through a series of four decarboxylations. Increased levels of coproporphyrinogens can indicate congenital erythropoietic porphyria or sideroblastic anemia, which are inherited disorders. Porphyria is a pathological state characterized by abnormalities of porphyrin metabolism and results in the excretion of large quantities of porphyrins in the urine and in extreme sensitivity to light. A large number of factors are capable of increasing porphyrin excretion, owing to different and multiple causes and etiologies: (1) the main site of the chronic hepatic porphyria disease process concentrates on the liver, (2) a functional and morphologic liver injury is almost regularly associated with this chronic porphyria, and (3) the toxic form due to occupational and environmental exposure takes mainly a subclinical course. Hepatic factors include disturbance in coproporphyrinogen metabolism, which results from inhibition of coproporphyrinogen oxidase as well as from the rapid loss and diminished utilization of coproporphyrinogen in the hepatocytes. This may also explain why coproporphyrin, its autoxidation product, predominates physiologically in the urine. Decreased biliary excretion of coproporphyrin leading to a compensatory urinary excretion. Therefore, the coproporphyrin ring isomer ratio (1:III) becomes a sensitive index for impaired liver function, intrahepatic cholestasis, and disturbed activity of hepatic uroporphyrinogen decarboxylase. In itself, secondary coproporphyrinuria is not associated with porphyria symptoms of a hepatologic-gastroenterologic, neurologic, or dermatologic order, even though coproporphyrinuria can occur with such symptoms (PMID: 3327428). Under certain conditions, coproporphyrinogen III can act as a phototoxin, a neurotoxin, and a metabotoxin. A phototoxin leads to cell damage upon exposure to light. A neurotoxin causes damage to nerve cells and nerve tissues. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Chronically high levels of porphyrins are associated with porphyrias such as porphyria variegate, acute intermittent porphyria, hereditary coproporphyria (HCP), congenital erythropoietic porphyria, and sideroblastic anemia. In particular, coproporphyrinogen III is accumulated and excreted excessively in the feces in acute intermittent porphyria, protoporphyria, and variegate porphyria. There are several types of porphyrias (most are inherited). Hepatic porphyrias are characterized by acute neurological attacks (seizures, psychosis, extreme back and abdominal pain, and an acute polyneuropathy), while the erythropoietic forms present with skin problems (usually a light-sensitive blistering rash and increased hair growth). The neurotoxicity of porphyrins may be due to their selective interactions with tubulin, which disrupt microtubule formation and cause neural malformations (PMID: 3441503).
Coproporphyrinogen III oxidase is deficient in hereditary coproporphyria. These persons usually have enhanced excretion even in a subclinical state of the disease.(PubMed ID 14605502 ) [HMDB]. Coproporphyrinogen III is found in many foods, some of which are cucumber, climbing bean, horseradish, and pepper (c. frutescens).
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同义名列表

15 个代谢物同义名

3-[9,14,20-tris(2-carboxyethyl)-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1(20),3,5,8,10,13,15,18-octaen-4-yl]propanoic acid; 5,10,15,20,22,24-Hexahydro-3,8,13,17-tetramethyl-21H,23H-porphine-2,7,12,18-tetrapropanoic acid; 5,10,15,20,22,24-Hexahydro-3,8,13,17-tetramethyl-21H,23H-porphine-2,7,12,18-tetrapropanoate; 3,8,13,17-Tetramethyl-5,10,15,20,22,24-hexahydroporphyrin-2,7,12,18-tetrapropanoic acid; 3,8,13,17-Tetramethyl-5,10,15,20,22,24-hexahydroporphyrin-2,7,12,18-tetrapropionic acid; 5,10,15,20,22,24-Hexahydro-3,8,13,17-tetramethyl-2,7,12,18-porphinetetrapropionic acid; 3,8,13,17-Tetramethyl-5,10,15,20,22,24-hexahydroporphyrin-2,7,12,18-tetrapropionate; 3,8,13,17-Tetramethyl-5,10,15,20,22,24-hexahydroporphyrin-2,7,12,18-tetrapropanoate; 5,10,15,20,22,24-Hexahydro-3,8,13,17-tetramethyl-2,7,12,18-porphinetetrapropionate; coproporphyrinogen III; Coproporphyrinogen-III; Coproporphyrin III; Coproporphyrinogen; Coproporphyrin; Coproporphyrinogen III



数据库引用编号

23 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(4)

BioCyc(1)

PlantCyc(0)

代谢反应

80 个相关的代谢反应过程信息。

Reactome(54)

BioCyc(3)

WikiPathways(1)

Plant Reactome(0)

INOH(1)

PlantCyc(0)

COVID-19 Disease Map(1)

PathBank(20)

PharmGKB(0)

3 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 5 AHR, CAT, CPOX, HMBS, PLA2G6
Peripheral membrane protein 2 ALAS1, PPOX
Endosome membrane 1 ABCB6
Endoplasmic reticulum membrane 2 ABCB6, SCD
Mitochondrion membrane 2 ABCG2, TSPO
Nucleus 1 AHR
cytosol 9 ABCB6, AHR, ALAS1, CAT, CPOX, HMBS, PLA2G6, TSPO, UROD
mitochondrial membrane 3 ABCG2, PPOX, TSPO
nucleoplasm 6 ABCB6, ABCG2, AHR, ALAS1, ATP2B1, UROD
Cell membrane 5 ABCB6, ABCG2, ATP2B1, ITGAM, PLA2G6
Early endosome membrane 1 ABCB6
Multi-pass membrane protein 7 ABCB6, ABCG2, ATP2B1, FLVCR1, SCD, SLC25A38, TSPO
Golgi apparatus membrane 1 ABCB6
Synapse 2 ATP2B1, PPOX
cell surface 2 EPO, ITGAM
glutamatergic synapse 1 ATP2B1
Golgi apparatus 1 ABCB6
Golgi membrane 1 ABCB6
lysosomal membrane 1 ABCB6
mitochondrial inner membrane 5 ALAS1, FECH, FLVCR1, PPOX, SLC25A38
postsynapse 1 PPOX
presynaptic membrane 1 ATP2B1
synaptic vesicle 1 PPOX
endosome 1 ABCB6
plasma membrane 7 ABCB6, ABCG2, ATP2B1, FLVCR1, GCG, ITGAM, PLA2G6
synaptic vesicle membrane 1 ATP2B1
Membrane 11 ABCB6, ABCG2, ATP2B1, CAT, CPOX, FLVCR1, ITGAM, PLA2G6, SCD, SLC25A38, TSPO
apical plasma membrane 1 ABCG2
basolateral plasma membrane 1 ATP2B1
extracellular exosome 6 ABCB6, ATP2B1, CAT, EPO, ITGAM, TSPO
Lysosome membrane 1 ABCB6
endoplasmic reticulum 3 ABCB6, SCD, TSPO
extracellular space 4 EPO, GCG, ITGAM, PLA2G6
perinuclear region of cytoplasm 1 PPOX
mitochondrion 10 ABCB6, ALAS1, CAT, CPOX, FECH, FLVCR1, PLA2G6, PPOX, SLC25A38, TSPO
protein-containing complex 2 AHR, CAT
intracellular membrane-bounded organelle 3 ATP2B1, CAT, TSPO
Single-pass type I membrane protein 1 ITGAM
Secreted 2 EPO, GCG
extracellular region 5 CAT, DNAH9, EPO, GCG, PPOX
Mitochondrion outer membrane 1 ABCB6
mitochondrial outer membrane 2 ABCB6, TSPO
mitochondrial matrix 3 ALAS1, CAT, FECH
transcription regulator complex 1 AHR
motile cilium 1 DNAH9
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 ATP2B1
external side of plasma membrane 1 ITGAM
neuronal dense core vesicle lumen 1 PPOX
cytoplasmic vesicle 1 PPOX
microtubule cytoskeleton 1 PLA2G6
nucleolus 1 SCD
Melanosome membrane 1 ABCB6
Apical cell membrane 1 ABCG2
Mitochondrion inner membrane 4 ALAS1, FECH, PPOX, SLC25A38
Membrane raft 2 ABCG2, ITGAM
focal adhesion 1 CAT
microtubule 1 DNAH9
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
mitochondrial intermembrane space 2 CPOX, PPOX
lateral plasma membrane 1 ATP2B1
axoneme 1 DNAH9
nuclear speck 1 PLA2G6
chromatin 1 AHR
Late endosome membrane 1 ABCB6
cell projection 1 ATP2B1
brush border membrane 1 ABCG2
Cytoplasm, cytoskeleton, cilium axoneme 1 DNAH9
Basolateral cell membrane 1 ATP2B1
aryl hydrocarbon receptor complex 1 AHR
specific granule membrane 1 ITGAM
tertiary granule membrane 1 ITGAM
Presynaptic cell membrane 1 ATP2B1
cell body 1 EPO
pseudopodium 1 PLA2G6
multivesicular body membrane 1 ABCB6
plasma membrane raft 1 ITGAM
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 3 CAT, EPO, GCG
endoplasmic reticulum lumen 1 GCG
Secreted, extracellular exosome 1 ABCB6
mitochondrial envelope 1 ABCB6
immunological synapse 1 ATP2B1
9+2 motile cilium 1 DNAH9
dynein complex 1 DNAH9
ATP-binding cassette (ABC) transporter complex 1 ABCB6
Endosome, multivesicular body membrane 1 ABCB6
external side of apical plasma membrane 1 ABCG2
endolysosome membrane 1 ABCB6
[Isoform 1]: Cell membrane 1 FLVCR1
Rough endoplasmic reticulum 1 PPOX
Intermembrane side 1 PPOX
Cell projection, pseudopodium 1 PLA2G6
integrin complex 1 ITGAM
[Glucagon-like peptide 1]: Secreted 1 GCG
catalase complex 1 CAT
integrin alphaM-beta2 complex 1 ITGAM
vacuolar membrane 1 ABCB6
photoreceptor ribbon synapse 1 ATP2B1
nuclear aryl hydrocarbon receptor complex 1 AHR
cytosolic aryl hydrocarbon receptor complex 1 AHR
[Isoform 2]: Mitochondrion membrane 1 FLVCR1
outer dynein arm 1 DNAH9
distal portion of axoneme 1 DNAH9


文献列表

  • Yan Zhao, Wei Xu, Lijing Wang, Shuai Han, Yongzhong Zhang, Qingzhi Liu, Baoshen Liu, Xiangyu Zhao. A Maize Necrotic Leaf Mutant Caused by Defect of Coproporphyrinogen III Oxidase in the Porphyrin Pathway. Genes. 2022 01; 13(2):. doi: 10.3390/genes13020272. [PMID: 35205317]
  • Pritu Pratibha, Sunil Kumar Singh, Ramamurthy Srinivasan, Shripad Ramachandra Bhat, Yelam Sreenivasulu. Gametophyte Development Needs Mitochondrial Coproporphyrinogen III Oxidase Function. Plant physiology. 2017 May; 174(1):258-275. doi: 10.1104/pp.16.01482. [PMID: 28270625]
  • Peter V Minorsky. On the Inside. Plant physiology. 2017 May; 174(1):1-2. doi: 10.1104/pp.17.00492. [PMID: 28461397]
  • Sylviane Liotenberg, Anne-Soisig Steunou, Anne Durand, Marie-Line Bourbon, David Bollivar, Mats Hansson, Chantal Astier, Soufian Ouchane. Oxygen-dependent copper toxicity: targets in the chlorophyll biosynthesis pathway identified in the copper efflux ATPase CopA deficient mutant. Environmental microbiology. 2015 Jun; 17(6):1963-76. doi: 10.1111/1462-2920.12733. [PMID: 25471928]
  • J D Phillips, L K Jackson, M Bunting, M R Franklin, K R Thomas, J E Levy, N C Andrews, J P Kushner. A mouse model of familial porphyria cutanea tarda. Proceedings of the National Academy of Sciences of the United States of America. 2001 Jan; 98(1):259-64. doi: 10.1073/pnas.98.1.259. [PMID: 11134514]
  • S W Ryter, R M Tyrrell. The heme synthesis and degradation pathways: role in oxidant sensitivity. Heme oxygenase has both pro- and antioxidant properties. Free radical biology & medicine. 2000 Jan; 28(2):289-309. doi: 10.1016/s0891-5849(99)00223-3. [PMID: 11281297]