GLYCERIC ACID (BioDeep_00000400458)

   

natural product BioNovoGene_Lab2019 Volatile Flavor Compounds


代谢物信息卡片


D-(+)-Glyceric acid hemicalcium salt

化学式: C3H6O4 (106.0266076)
中文名称: DL-甘油酸, 甘油酸, 甘油酸酯
谱图信息: 最多检出来源 Homo sapiens(natural_products) 58.33%

分子结构信息

SMILES: C(C(C(=O)O)O)O
InChI: InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)

描述信息

A trionic acid that consists of propionic acid substituted at positions 2 and 3 by hydroxy groups.

同义名列表

6 个代谢物同义名

DL-GLYCERIC ACID; GLYCERIC ACID; DL-Glyceric acid sol; D-(+)-Glyceric acid hemicalcium salt; D-Glycerate; Glyceric acid



数据库引用编号

22 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

71 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • M Merlani, V Barbakadze, L Amiranashvili, L Gogilashvili, A Petrou, A Geronikaki, A Ćirić, J Glamočlija, M Soković. Caffeic and 3-(3,4-dihydroxyphenyl)glyceric acid derivatives as antimicrobial agent: biological evaluation and molecular docking studies. SAR and QSAR in environmental research. 2022 Apr; 33(4):307-321. doi: 10.1080/1062936x.2022.2066173. [PMID: 35532307]
  • Lili Cui, Chuanling Zhang, Zhichao Li, Tuxiu Xian, Limin Wang, Zhisheng Zhang, Guohui Zhu, Xinxiang Peng. Two plastidic glycolate/glycerate translocator 1 isoforms function together to transport photorespiratory glycolate and glycerate in rice chloroplasts. Journal of experimental botany. 2021 03; 72(7):2584-2599. doi: 10.1093/jxb/erab020. [PMID: 33483723]
  • Jörn Oliver Sass, Sidney Behringer, Malkanthi Fernando, Elisabetta Cesaroni, Ida Cursio, Alberto Volpini, Claudia Till. d-Glycerate kinase deficiency in a neuropediatric patient. Brain & development. 2020 Feb; 42(2):226-230. doi: 10.1016/j.braindev.2019.11.008. [PMID: 31837836]
  • Selçuk Aslan, Elad Noor, Sara Benito Vaquerizo, Steffen N Lindner, Arren Bar-Even. Design and engineering of E. coli metabolic sensor strains with a wide sensitivity range for glycerate. Metabolic engineering. 2020 01; 57(?):96-109. doi: 10.1016/j.ymben.2019.09.002. [PMID: 31491545]
  • Yoav Zehavi, Hanna Mandel, Ayelet Eran, Sarit Ravid, Muhammad Abu Rashid, Erwin E W Jansen, Mirjam M C Wamelink, Ann Saada, Avraham Shaag, Orly Elpeleg, Ronen Spiegel. Severe infantile epileptic encephalopathy associated with D-glyceric aciduria: report of a novel case and review. Metabolic brain disease. 2019 04; 34(2):557-563. doi: 10.1007/s11011-019-0384-x. [PMID: 30637540]
  • Dorottya Nagy-Szakal, Dinesh K Barupal, Bohyun Lee, Xiaoyu Che, Brent L Williams, Ellie J R Kahn, Joy E Ukaigwe, Lucinda Bateman, Nancy G Klimas, Anthony L Komaroff, Susan Levine, Jose G Montoya, Daniel L Peterson, Bruce Levin, Mady Hornig, Oliver Fiehn, W Ian Lipkin. Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Scientific reports. 2018 07; 8(1):10056. doi: 10.1038/s41598-018-28477-9. [PMID: 29968805]
  • Liang Chi, Xiaoming Bian, Bei Gao, Pengcheng Tu, Yunjia Lai, Hongyu Ru, Kun Lu. Effects of the Artificial Sweetener Neotame on the Gut Microbiome and Fecal Metabolites in Mice. Molecules (Basel, Switzerland). 2018 Feb; 23(2):. doi: 10.3390/molecules23020367. [PMID: 29425148]
  • Michael A Swanson, Stephanie M Garcia, Elaine Spector, Kathryn Kronquist, Geralyn Creadon-Swindell, Melanie Walter, Ernst Christensen, Johan L K Van Hove, Jörn Oliver Sass. d-Glyceric aciduria does not cause nonketotic hyperglycinemia: A historic co-occurrence. Molecular genetics and metabolism. 2017 06; 121(2):80-82. doi: 10.1016/j.ymgme.2017.04.009. [PMID: 28462797]
  • Emmanuel Richard, Jean-Marc Blouin, Jérome Harambat, Brigitte Llanas, Stéphane Bouchet, Cécile Acquaviva, Renaud de la Faille. Late diagnosis of primary hyperoxaluria type III. Annals of clinical biochemistry. 2017 May; 54(3):406-411. doi: 10.1177/0004563216677101. [PMID: 27742850]
  • Stéphanie Arrivault, Toshihiro Obata. Quantification of Photorespiratory Intermediates by Mass Spectrometry-Based Approaches. Methods in molecular biology (Clifton, N.J.). 2017; 1653(?):97-104. doi: 10.1007/978-1-4939-7225-8_7. [PMID: 28822128]
  • Leonardo Perez de Souza, Marek Szecówka, Alisdair R Fernie, Takayuki Tohge. 13CO2 Labeling and Mass Spectral Analysis of Photorespiration. Methods in molecular biology (Clifton, N.J.). 2017; 1653(?):157-166. doi: 10.1007/978-1-4939-7225-8_11. [PMID: 28822132]
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  • Markus Niessen, Katrin Krause, Ina Horst, Norma Staebler, Stephanie Klaus, Stefanie Gaertner, Rashad Kebeish, Wagner L Araujo, Alisdair R Fernie, Christoph Peterhansel. Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice. Journal of experimental botany. 2012 Apr; 63(7):2705-16. doi: 10.1093/jxb/err453. [PMID: 22268146]
  • Jean-Baptise Cazier, Pamela J Kaisaki, Karène Argoud, Benjamin J Blaise, Kirill Veselkov, Timothy M D Ebbels, Tsz Tsang, Yulan Wang, Marie-Thérèse Bihoreau, Steve C Mitchell, Elaine C Holmes, John C Lindon, James Scott, Jeremy K Nicholson, Marc-Emmanuel Dumas, Dominique Gauguier. Untargeted metabolome quantitative trait locus mapping associates variation in urine glycerate to mutant glycerate kinase. Journal of proteome research. 2012 Feb; 11(2):631-42. doi: 10.1021/pr200566t. [PMID: 22029865]
  • Alexandra Maier, Holger Fahnenstich, Susanne von Caemmerer, Martin K M Engqvist, Andreas P M Weber, Ulf-Ingo Flügge, Veronica G Maurino. Transgenic Introduction of a Glycolate Oxidative Cycle into A. thaliana Chloroplasts Leads to Growth Improvement. Frontiers in plant science. 2012; 3(?):38. doi: 10.3389/fpls.2012.00038. [PMID: 22639647]
  • Hervé Colinet, David Renault, Blandine Charoy-Guével, Emmanuelle Com. Metabolic and proteomic profiling of diapause in the aphid parasitoid Praon volucre. PloS one. 2012; 7(2):e32606. doi: 10.1371/journal.pone.0032606. [PMID: 22389713]
  • David Toubiana, Yaniv Semel, Takayuki Tohge, Romina Beleggia, Luigi Cattivelli, Leah Rosental, Zoran Nikoloski, Dani Zamir, Alisdair R Fernie, Aaron Fait. Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations. PLoS genetics. 2012; 8(3):e1002612. doi: 10.1371/journal.pgen.1002612. [PMID: 22479206]
  • Amy M Trowbridge, Dolores Asensio, Allyson S D Eller, Danielle A Way, Michael J Wilkinson, Jörg-Peter Schnitzler, Robert B Jackson, Russell K Monson. Contribution of various carbon sources toward isoprene biosynthesis in poplar leaves mediated by altered atmospheric CO2 concentrations. PloS one. 2012; 7(2):e32387. doi: 10.1371/journal.pone.0032387. [PMID: 22384238]
  • Josirley de F C Carvalho, Pippa J Madgwick, Stephen J Powers, Alfred J Keys, Peter J Lea, Martin A J Parry. An engineered pathway for glyoxylate metabolism in tobacco plants aimed to avoid the release of ammonia in photorespiration. BMC biotechnology. 2011 Nov; 11(?):111. doi: 10.1186/1472-6750-11-111. [PMID: 22104170]
  • Melissa J Morine, Audrey C Tierney, Ben van Ommen, Hannelore Daniel, Sinead Toomey, Ingrid M F Gjelstad, Isobel C Gormley, Pablo Pérez-Martinez, Christian A Drevon, Jose López-Miranda, Helen M Roche. Transcriptomic coordination in the human metabolic network reveals links between n-3 fat intake, adipose tissue gene expression and metabolic health. PLoS computational biology. 2011 Nov; 7(11):e1002223. doi: 10.1371/journal.pcbi.1002223. [PMID: 22072950]
  • Ehud Katz, Kyung Hwan Boo, Ho Youn Kim, Richard A Eigenheer, Brett S Phinney, Vladimir Shulaev, Florence Negre-Zakharov, Avi Sadka, Eduardo Blumwald. Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development. Journal of experimental botany. 2011 Nov; 62(15):5367-84. doi: 10.1093/jxb/err197. [PMID: 21841177]
  • Asaph B Cousins, Berkley J Walker, Itsara Pracharoenwattana, Steven M Smith, Murray R Badger. Peroxisomal hydroxypyruvate reductase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Photosynthesis research. 2011 Sep; 108(2-3):91-100. doi: 10.1007/s11120-011-9651-3. [PMID: 21567290]
  • Ramona Kern, Hermann Bauwe, Martin Hagemann. Evolution of enzymes involved in the photorespiratory 2-phosphoglycolate cycle from cyanobacteria via algae toward plants. Photosynthesis research. 2011 Sep; 109(1-3):103-14. doi: 10.1007/s11120-010-9615-z. [PMID: 21222161]
  • Apaporn Boonmee, Chantragan Srisomsap, Daranee Chokchaichamnankit, Aphichart Karnchanatat, Polkit Sangvanich. A proteomic analysis of Curcuma comosa Roxb. rhizomes. Proteome science. 2011 Jul; 9(?):43. doi: 10.1186/1477-5956-9-43. [PMID: 21801377]
  • Qian Qiao, Tonghua Li, Jiangming Sun, Xiaoyan Liu, Jianke Ren, Jian Fei. Metabolomic analysis of normal (C57BL/6J, 129S1/SvImJ) mice by gas chromatography-mass spectrometry: detection of strain and gender differences. Talanta. 2011 Jul; 85(1):718-24. doi: 10.1016/j.talanta.2011.04.060. [PMID: 21645764]
  • Thomas P Howard, Julie C Lloyd, Christine A Raines. Inter-species variation in the oligomeric states of the higher plant Calvin cycle enzymes glyceraldehyde-3-phosphate dehydrogenase and phosphoribulokinase. Journal of experimental botany. 2011 Jul; 62(11):3799-805. doi: 10.1093/jxb/err057. [PMID: 21498632]
  • Paula Casati, Mabel Campi, Darren J Morrow, John F Fernandes, Virginia Walbot. Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize. BMC genomics. 2011 Jun; 12(?):321. doi: 10.1186/1471-2164-12-321. [PMID: 21679461]
  • Peter E Larsen, Avinash Sreedasyam, Geetika Trivedi, Gopi K Podila, Leland J Cseke, Frank R Collart. Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. BMC systems biology. 2011 May; 5(?):70. doi: 10.1186/1752-0509-5-70. [PMID: 21569493]
  • Baolei Jia, Le Thuy Linh, Sangmin Lee, Bang Phuong Pham, Jinliang Liu, Hongyu Pan, Shihong Zhang, Gang-Won Cheong. Biochemical characterization of glyceraldehyde-3-phosphate dehydrogenase from Thermococcus kodakarensis KOD1. Extremophiles : life under extreme conditions. 2011 May; 15(3):337-46. doi: 10.1007/s00792-011-0365-4. [PMID: 21409597]
  • Yasuhiro Yamamoto, Kenkichi Takase, Junji Kishino, Megumi Fujita, Noboru Okamura, Toshiyuki Sakaeda, Masafumi Fujimoto, Tatsurou Yagami. Proteomic identification of protein targets for 15-deoxy-Δ(12,14)-prostaglandin J2 in neuronal plasma membrane. PloS one. 2011 Mar; 6(3):e17552. doi: 10.1371/journal.pone.0017552. [PMID: 21445266]
  • Stefan Timm, Alexandra Florian, Kathrin Jahnke, Adriano Nunes-Nesi, Alisdair R Fernie, Hermann Bauwe. The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end. Plant physiology. 2011 Feb; 155(2):694-705. doi: 10.1104/pp.110.166538. [PMID: 21205613]
  • Wagner L Araújo, Adriano Nunes-Nesi, Sonia Osorio, Björn Usadel, Daniela Fuentes, Réka Nagy, Ilse Balbo, Martin Lehmann, Claudia Studart-Witkowski, Takayuki Tohge, Enrico Martinoia, Xavier Jordana, Fábio M Damatta, Alisdair R Fernie. Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture. The Plant cell. 2011 Feb; 23(2):600-27. doi: 10.1105/tpc.110.081224. [PMID: 21307286]
  • Jan Huege, Jan Goetze, Doreen Schwarz, Hermann Bauwe, Martin Hagemann, Joachim Kopka. Modulation of the major paths of carbon in photorespiratory mutants of synechocystis. PloS one. 2011 Jan; 6(1):e16278. doi: 10.1371/journal.pone.0016278. [PMID: 21283704]
  • Lei Wang, Wei Chen, Yun Feng, Yan Ren, Zhennan Gu, Haiqin Chen, Hongchao Wang, Michael J Thomas, Baixi Zhang, Isabelle M Berquin, Yang Li, Jiansheng Wu, Huanxin Zhang, Yuanda Song, Xiang Liu, James S Norris, Suriguga Wang, Peng Du, Junguo Shen, Na Wang, Yanlin Yang, Wei Wang, Lu Feng, Colin Ratledge, Hao Zhang, Yong Q Chen. Genome characterization of the oleaginous fungus Mortierella alpina. PloS one. 2011; 6(12):e28319. doi: 10.1371/journal.pone.0028319. [PMID: 22174787]
  • Jérôme Harambat, Sonia Fargue, Justine Bacchetta, Cécile Acquaviva, Pierre Cochat. Primary hyperoxaluria. International journal of nephrology. 2011; 2011(?):864580. doi: 10.4061/2011/864580. [PMID: 21748001]
  • Penglin Li, Xiaoling Miao, Rongxiu Li, Jianjiang Zhong. In situ biodiesel production from fast-growing and high oil content Chlorella pyrenoidosa in rice straw hydrolysate. Journal of biomedicine & biotechnology. 2011; 2011(?):141207. doi: 10.1155/2011/141207. [PMID: 21318171]
  • Andrea Bräutigam, Kaisa Kajala, Julia Wullenweber, Manuel Sommer, David Gagneul, Katrin L Weber, Kevin M Carr, Udo Gowik, Janina Mass, Martin J Lercher, Peter Westhoff, Julian M Hibberd, Andreas P M Weber. An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species. Plant physiology. 2011 Jan; 155(1):142-56. doi: 10.1104/pp.110.159442. [PMID: 20543093]
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  • Rohit Ghai, Francisco Rodriguez-Valera, Katherine D McMahon, Danyelle Toyama, Raquel Rinke, Tereza Cristina Souza de Oliveira, José Wagner Garcia, Fernando Pellon de Miranda, Flavio Henrique-Silva. Metagenomics of the water column in the pristine upper course of the Amazon river. PloS one. 2011; 6(8):e23785. doi: 10.1371/journal.pone.0023785. [PMID: 21915244]
  • Yalin Liu, Huimin Gao, Zhimin Wang, Qiwei Zhang. [Trace analysis of aristolochic acid A]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica. 2010 Dec; 35(24):3314-7. doi: 10.4268/cjcmm20102419. [PMID: 21438398]
  • Tiago Tomaz, Matthieu Bagard, Itsara Pracharoenwattana, Pernilla Lindén, Chun Pong Lee, Adam J Carroll, Elke Ströher, Steven M Smith, Per Gardeström, A Harvey Millar. Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis. Plant physiology. 2010 Nov; 154(3):1143-57. doi: 10.1104/pp.110.161612. [PMID: 20876337]
  • Phuc Thi Do, Marion Prudent, Ronan Sulpice, Mathilde Causse, Alisdair R Fernie. The influence of fruit load on the tomato pericarp metabolome in a Solanum chmielewskii introgression line population. Plant physiology. 2010 Nov; 154(3):1128-42. doi: 10.1104/pp.110.163030. [PMID: 20841452]
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  • Pierre Cochat, Valérie Pichault, Justine Bacchetta, Laurence Dubourg, Jean-François Sabot, Christine Saban, Michel Daudon, Aurélia Liutkus. Nephrolithiasis related to inborn metabolic diseases. Pediatric nephrology (Berlin, Germany). 2010 Mar; 25(3):415-24. doi: 10.1007/s00467-008-1085-6. [PMID: 19156444]
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