3-Phenylcatechol (BioDeep_00000003021)

 

Secondary id: BioDeep_00001868947

PANOMIX_OTCML-2023


代谢物信息卡片


2,3-Dihydroxybiphenyl

化学式: C12H10O2 (186.0681)
中文名称: 2,3-二羟基联苯, 联苯-2,3-二醇
谱图信息: 最多检出来源 Viridiplantae(plant) 18.91%

分子结构信息

SMILES: C1=CC=C(C=C1)C2=C(C(=CC=C2)O)O
InChI: InChI=1S/C12H10O2/c13-11-8-4-7-10(12(11)14)9-5-2-1-3-6-9/h1-8,13-14H

描述信息

CONFIDENCE Reference Standard (Level 1); INTERNAL_ID 8005

同义名列表

5 个代谢物同义名

2,3-Dihydroxybiphenyl; biphenyl-2,3-diol; 3-Phenylcatechol; Biphenyl-2,3-diol; Biphenyl-2,3-diol



数据库引用编号

14 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(1)

PlantCyc(0)

代谢反应

6 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(2)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(4)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 CAT, HELB, PAX6, PMP2, PSMB5, STAM2
Peripheral membrane protein 3 CHN2, FDXR, STAM2
Endoplasmic reticulum membrane 1 ACER3
Nucleus 6 HBP1, HELB, MPC2, PAX6, PMP2, PSMB5
cytosol 8 CA6, CAT, CHN2, HELB, PAX6, PMP2, PSMB5, STAM2
nuclear body 1 HELB
phagocytic vesicle 1 STX8
trans-Golgi network 1 STX8
centrosome 1 PSMB5
nucleoplasm 5 HBP1, HELB, PAX6, PSMB5, STAM2
Cell membrane 2 ACKR3, HBP1
Cytoplasmic side 1 STAM2
Early endosome membrane 1 STAM2
Multi-pass membrane protein 4 ACER3, ACKR3, MPC1, MPC2
Golgi apparatus membrane 1 ACER3
Synapse 1 CHN2
cell surface 1 ACKR3
Golgi membrane 1 ACER3
mitochondrial inner membrane 3 FDXR, MPC1, MPC2
endosome 2 ACKR3, STX8
plasma membrane 3 ACKR3, HBP1, STX8
Membrane 6 ACER3, CAT, CHN2, PAX6, STX8, TMEM131
apical plasma membrane 1 HBP1
basolateral plasma membrane 1 HBP1
extracellular exosome 6 CA6, CAT, CFH, PMP2, PSMB5, SPINK1
endoplasmic reticulum 1 STX8
extracellular space 2 CA6, CFH
perinuclear region of cytoplasm 1 STX8
mitochondrion 5 CAT, FDXR, HELB, MPC1, MPC2
protein-containing complex 1 CAT
intracellular membrane-bounded organelle 3 ACKR3, CAT, STAM2
Single-pass type I membrane protein 1 TMEM131
Secreted 3 CA6, CFH, SPINK1
extracellular region 4 CA6, CAT, CFH, HBP1
Single-pass membrane protein 1 STX8
mitochondrial matrix 2 CAT, FDXR
external side of plasma membrane 2 ACKR3, HBP1
Early endosome 2 ACKR3, STX8
clathrin-coated pit 1 ACKR3
recycling endosome 2 ACKR3, STX8
vesicle 1 STX8
Apical cell membrane 1 HBP1
Mitochondrion inner membrane 3 FDXR, MPC1, MPC2
focal adhesion 1 CAT
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
nuclear speck 1 HBP1
Late endosome 1 STX8
chromatin 2 HBP1, PAX6
Chromosome 1 HELB
blood microparticle 1 CFH
proteasome core complex, beta-subunit complex 1 PSMB5
Basolateral cell membrane 1 HBP1
Lipid-anchor, GPI-anchor 1 HBP1
site of double-strand break 1 HELB
Endomembrane system 1 STX8
myelin sheath 1 PMP2
SNARE complex 1 STX8
ficolin-1-rich granule lumen 1 CAT
proteasome complex 1 PSMB5
secretory granule lumen 1 CAT
endocytic vesicle 1 STAM2
serine-type endopeptidase complex 1 CFH
Single-pass type IV membrane protein 1 STX8
proteasome core complex 1 PSMB5
ESCRT-0 complex 1 STAM2
[Isoform 1]: Nucleus 1 PAX6
inner mitochondrial membrane protein complex 2 MPC1, MPC2
catalase complex 1 CAT
catalytic complex 1 HBP1
symbiont cell surface 1 CFH
[Isoform 5a]: Nucleus 1 PAX6


文献列表

  • Jitka Viktorovtá, Martina Novakova, Ladislava Trbolova, Blanka Vrchotova, Petra Lovecka, Martina Mackova, Tomas Macek. Characterization of transgenic tobacco plants containing bacterial bphC gene and study of their phytoremediation ability. International journal of phytoremediation. 2014; 16(7-12):937-46. doi: 10.1080/15226514.2013.810575. [PMID: 24933894]
  • Martina Novakova, Martina Mackova, Zuzana Antosova, Jitka Viktorova, Miklos Szekeres, Katerina Demnerova, Tomas Macek. Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of phytoremediation of polychlorinated biphenyls. Bioengineered bugs. 2010 Nov; 1(6):419-23. doi: 10.4161/bbug.1.6.12723. [PMID: 21468210]
  • I Mulako, J M Farrant, H Collett, N Illing. Expression of Xhdsi-1VOC, a novel member of the vicinal oxygen chelate (VOC) metalloenzyme superfamily, is up-regulated in leaves and roots during desiccation in the resurrection plant Xerophyta humilis (Bak) Dur and Schinz. Journal of experimental botany. 2008; 59(14):3885-901. doi: 10.1093/jxb/ern226. [PMID: 18791196]
  • Matthew C Anderton, Sanjib Bhakta, Gurdyal S Besra, Peter Jeavons, Lindsay D Eltis, Edith Sim. Characterization of the putative operon containing arylamine N-acetyltransferase (nat) in Mycobacterium bovis BCG. Molecular microbiology. 2006 Jan; 59(1):181-92. doi: 10.1111/j.1365-2958.2005.04945.x. [PMID: 16359327]
  • Daisuke Miyazawa, Gouri Mukerjee-Dhar, Minoru Shimura, Takashi Hatta, Kazuhide Kimbara. Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: cloning and characterization. Microbiology (Reading, England). 2004 Apr; 150(Pt 4):993-1004. doi: 10.1099/mic.0.26858-0. [PMID: 15073308]
  • Takashi Hatta, Gouri Mukerjee-Dhar, Jiri Damborsky, Hohzoh Kiyohara, Kazuhide Kimbara. Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a polychlorinated biphenyl- and naphthalene-degrading Bacillus sp. JF8. The Journal of biological chemistry. 2003 Jun; 278(24):21483-92. doi: 10.1074/jbc.m210240200. [PMID: 12672826]