Glutaconic acid (BioDeep_00000001730)

   

human metabolite Endogenous


代谢物信息卡片


1-Propene-1,3-dicarboxylic acid

化学式: C5H6O4 (130.0266)
中文名称: 戊烯二酸, 谷氨酸, 反-戊烯二酸
谱图信息: 最多检出来源 Homo sapiens(blood) 57.5%

Reviewed

Last reviewed on 2024-07-15.

Cite this Page

Glutaconic acid. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China. https://query.biodeep.cn/s/glutaconic_acid (retrieved 2024-12-22) (BioDeep RN: BioDeep_00000001730). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

分子结构信息

SMILES: C(=C\C(=O)O)/CC(=O)O
InChI: InChI=1S/C5H6O4/c6-4(7)2-1-3-5(8)9/h1-2H,3H2,(H,6,7)(H,8,9)/b2-1+

描述信息

Glutaconic acid is related to the fully saturated glutaric acid and belongs to the class of compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups. Glutaconic acid is soluble (in water) and a weakly acidic compound (based on its pKa). Glutaconic acid has been detected in the urine of individuals with inborn errors of metabolism. When present in sufficiently high levels, glutaconic acid can act as an acidogen, a neurotoxin, and a metabotoxin. An acidogen is an acidic compound that induces acidosis, which has multiple adverse effects on many organ systems. A neurotoxin is a compound that is toxic to neural tissues and cells. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Chronically high levels of glutaconic acid are associated with glutaric aciduria type I (glutaric acidemia type I, glutaryl-CoA dehydrogenase deficiency, GA1, or GAT1). GA1 is an inherited disorder in which the body is unable to completely break down the amino acids lysine, hydroxylysine, and tryptophan due to a deficiency of mitochondrial glutaryl-CoA dehydrogenase (EC 1.3.99.7, GCDH). Excessive levels of their intermediate breakdown products (e.g. glutaric acid, glutaryl-CoA, 3-hydroxyglutaric acid, glutaconic acid) can accumulate and cause damage to the brain (and also other organs), but particularly the basal ganglia. GA1 is associated with a risk for intracranial and retinal hemorrhage, and non-specific white matter changes. Babies with glutaric acidemia type I are often born with unusually large heads (macrocephaly). Other symptoms include spasticity (increased muscle tone/stiffness) and dystonia (involuntary muscle contractions resulting in abnormal movement or posture), but many affected individuals are asymptomatic. Seizures and coma (encephalopathy) are rare. GA1 also causes secondary carnitine deficiency because 3-hydroxyglutaric acid, like other organic acids, is detoxified by carnitine. Glutaconic acids neurotoxicity is thought to be partially caused by an excitotoxic mechanism in which glutaconic acid overactivates N-methyl-D-aspartate (NMDA) receptors. Accumulating trans-glutaconic (TG) acids have been proposed to be involved in the development of the striatal degeneration seen in children with glutaric acidemia type I via an excitotoxic mechanism.
Glutaconic acid is an organic compound with general formula C5H6O4. The compound is a dicarboxylic acid and related with the fully saturated glutaric acid. [HMDB]

同义名列表

23 个代谢物同义名

1-Propene-1,3-dicarboxylic acid; 1,3-Propenedicarboxylic acid; 1-Propene-1,3-dicarboxylate; Glutaconic acid, (e)-isomer; (2E)-pent-2-enedioic acid; 1,3-Propenedicarboxylate; (e)-2-Pentenedioic acid; trans-Glutaconic acid; 2E-pentenedioic acid; 2-Pentenedioic acid; (e)-Glutaconic acid; (e)-2-Pentenedioate; trans-Glutaconate; Pentenedioic acid; Glutaconic acid; (e)-Glutaconate; 2-Pentendioate; Pentenedioate; Glutaconate; Glutaconic acid; (E)-Glutaconate; Glutaconic acid; trans-Glutaconic acid



数据库引用编号

22 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

2 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(1)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(1)

  • Lysine Metabolism: Hydrogen Ion + meso-diaminopimelate ⟶ Carbon dioxide + L-Lysine

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 8 ANXA5, BCL2, DBH, FH, HTT, PAM, S1PR1, SPHK1
Peripheral membrane protein 2 ANXA5, SPHK1
Endosome membrane 2 HTT, SPHK1
Endoplasmic reticulum membrane 1 BCL2
Nucleus 5 BCL2, FH, HTT, PAM, SPHK1
autophagosome 1 HTT
cytosol 7 ANXA5, BCL2, FH, HMGCL, HTT, PAM, SPHK1
dendrite 1 HTT
nucleoplasm 4 HTT, PAM, S1PR1, SPHK1
Cell membrane 5 HTT, S1PR1, SELP, SLC13A3, SPHK1
Cell projection, axon 1 PAM
Early endosome membrane 1 SPHK1
Multi-pass membrane protein 5 HTT, S1PR1, SLC13A3, SLC22A6, SLC22A9
Synapse 3 DBH, HTT, SPHK1
Golgi apparatus 1 HTT
mitochondrial inner membrane 1 ATP5ME
presynaptic membrane 1 HTT
sarcolemma 1 ANXA5
Presynapse 2 S1PR1, SPHK1
endosome 1 S1PR1
plasma membrane 7 HTT, PAM, S1PR1, SELP, SLC13A3, SLC22A6, SPHK1
Membrane 7 ANXA5, BCL2, DBH, PAM, SLC13A3, SLC22A6, SPHK1
axon 2 HTT, PAM
basolateral plasma membrane 3 SLC13A3, SLC22A6, SLC22A9
caveola 1 SLC22A6
extracellular exosome 6 ANXA5, FH, PAM, SELP, SLC13A3, SLC22A6
endoplasmic reticulum 3 BCL2, DBH, HTT
extracellular space 2 DBH, SELP
perinuclear region of cytoplasm 1 HTT
mitochondrion 5 ATP5ME, BCL2, FH, GCDH, HMGCL
protein-containing complex 4 BCL2, HMGCL, HTT, SLC22A6
intracellular membrane-bounded organelle 4 DBH, PAM, S1PR1, SPHK1
Single-pass type I membrane protein 1 SELP
Secreted 2 DBH, SELP
extracellular region 4 ANXA5, DBH, PAM, SELP
Mitochondrion outer membrane 1 BCL2
Single-pass membrane protein 2 BCL2, PAM
mitochondrial outer membrane 1 BCL2
Mitochondrion matrix 2 GCDH, HMGCL
mitochondrial matrix 3 FH, GCDH, HMGCL
centriolar satellite 1 DBH
Nucleus membrane 1 BCL2
Bcl-2 family protein complex 1 BCL2
nuclear membrane 1 BCL2
external side of plasma membrane 3 ANXA5, S1PR1, SELP
microtubule cytoskeleton 1 PAM
Early endosome 1 HTT
Membrane, clathrin-coated pit 1 SPHK1
clathrin-coated pit 1 SPHK1
Single-pass type II membrane protein 1 DBH
postsynaptic membrane 1 HTT
Membrane raft 2 HTT, S1PR1
pore complex 1 BCL2
Cell junction, focal adhesion 1 HTT
Cytoplasm, cytoskeleton 1 PAM
focal adhesion 2 ANXA5, HTT
Peroxisome 1 HMGCL
peroxisomal matrix 1 HMGCL
collagen-containing extracellular matrix 1 ANXA5
Late endosome 1 HTT
Cell projection, neuron projection 1 HTT
Zymogen granule membrane 1 ANXA5
neuron projection 1 HTT
Chromosome 1 FH
centriole 1 HTT
Basolateral cell membrane 2 SLC22A6, SLC22A9
site of double-strand break 1 FH
Endomembrane system 1 HTT
Cytoplasmic vesicle membrane 1 HTT
myelin sheath 1 BCL2
basal plasma membrane 1 SLC22A6
platelet dense granule membrane 1 SELP
secretory granule lumen 1 DBH
secretory granule membrane 2 DBH, PAM
endocytic vesicle 1 SPHK1
vesicle membrane 1 ANXA5
Basal cell membrane 1 SLC22A6
Cytoplasmic vesicle, secretory vesicle membrane 2 DBH, PAM
postsynaptic cytosol 1 HTT
platelet alpha granule membrane 1 SELP
presynaptic cytosol 1 HTT
proton-transporting ATP synthase complex 1 ATP5ME
proton-transporting ATP synthase complex, coupling factor F(o) 1 ATP5ME
Cytoplasmic vesicle, secretory vesicle, chromaffin granule lumen 1 DBH
chromaffin granule lumen 1 DBH
transport vesicle membrane 2 DBH, PAM
platelet dense granule lumen 1 SELP
inclusion body 1 HTT
[Isoform Mitochondrial]: Mitochondrion 1 FH
[Isoform Cytoplasmic]: Cytoplasm, cytosol 1 FH
endothelial microparticle 1 ANXA5
[Soluble dopamine beta-hydroxylase]: Cytoplasmic vesicle, secretory vesicle lumen 1 DBH
Cytoplasmic vesicle, secretory vesicle, chromaffin granule membrane 1 DBH
chromaffin granule membrane 1 DBH
BAD-BCL-2 complex 1 BCL2
serotonergic synapse 1 HTT
[Huntingtin]: Cytoplasm 1 HTT
[Huntingtin, myristoylated N-terminal fragment]: Cytoplasmic vesicle, autophagosome 1 HTT


文献列表

  • Patrícia F Schuck, Estela N B Busanello, Anelise M Tonin, Carolina M Viegas, Gustavo C Ferreira. Neurotoxic effects of trans-glutaconic acid in rats. Oxidative medicine and cellular longevity. 2013; 2013(?):607610. doi: 10.1155/2013/607610. [PMID: 23606926]
  • Judith L Flanagan, Peter A Simmons, Joseph Vehige, Mark Dp Willcox, Qian Garrett. Role of carnitine in disease. Nutrition & metabolism. 2010 Apr; 7(?):30. doi: 10.1186/1743-7075-7-30. [PMID: 20398344]
  • Yohannes Hagos, Wolfgang Krick, Thomas Braulke, Chris Mühlhausen, Gerhard Burckhardt, Birgitta C Burckhardt. Organic anion transporters OAT1 and OAT4 mediate the high affinity transport of glutarate derivatives accumulating in patients with glutaric acidurias. Pflugers Archiv : European journal of physiology. 2008 Oct; 457(1):223-31. doi: 10.1007/s00424-008-0489-2. [PMID: 18365245]
  • E von Guggenberg, M Behe, T M Behr, M Saurer, T Seppi, C Decristoforo. 99mTc-labeling and in vitro and in vivo evaluation of HYNIC- and (Nalpha-His)acetic acid-modified [D-Glu1]-minigastrin. Bioconjugate chemistry. 2004 Jul; 15(4):864-71. doi: 10.1021/bc0300807. [PMID: 15264875]
  • John E Heidrich, Linda M Contos, Lucy A Hunsaker, Lorraine M Deck, David L Vander Jagt. Inhibition of pancreatic cholesterol esterase reduces cholesterol absorption in the hamster. BMC pharmacology. 2004 Apr; 4(?):5. doi: 10.1186/1471-2210-4-5. [PMID: 15096274]
  • C Mühlhausen, S Ergün, K A Strauss, D M Koeller, L Crnic, M Woontner, S I Goodman, K Ullrich, T Braulke. Vascular dysfunction as an additional pathomechanism in glutaric aciduria type I. Journal of inherited metabolic disease. 2004; 27(6):829-34. doi: 10.1023/b:boli.0000045766.98718.d6. [PMID: 15505389]
  • Ivo Barić, Kresimir Baraka, Miljenka Maradin, Dorotea Bartonicek, Vladimir Sarnavka, Davor Begović, Ksenija Fumić. [Glutaric aciduria type 1: an example of the importance of early detection of so-called cerebral organic aciduria]. Lijecnicki vjesnik. 2003 Nov; 125(11-12):312-6. doi: . [PMID: 15209027]