Hamamelose (BioDeep_00000005135)

 

Secondary id: BioDeep_00001870299

natural product


代谢物信息卡片


(2R,3R,4R)-2,3,4,5-tetrahydroxy-2-(hydroxymethyl)pentanoic acid

化学式: C6H12O7 (196.0583)
中文名称:
谱图信息: 最多检出来源 Viridiplantae(plant) 14.74%

分子结构信息

SMILES: C(C(C(C(CO)(C(=O)O)O)O)O)O
InChI: InChI=1S/C6H12O7/c7-1-3(9)4(10)6(13,2-8)5(11)12/h3-4,7-10,13H,1-2H2,(H,11,12)/t3-,4-,6-/m1/s1

描述信息

同义名列表

5 个代谢物同义名

(2R,3R,4R)-2,3,4,5-tetrahydroxy-2-(hydroxymethyl)pentanoic acid; 2-C-(hydroxymethyl)-D-ribonic acid; 2-Carboxy-D-arabinitol; SCHEMBL21313126; Hamamelose



数据库引用编号

9 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

350 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Hiroyoshi Matsumura, Eiichi Mizohata, Hiroyuki Ishida, Ayako Kogami, Takeshi Ueno, Amane Makino, Tsuyoshi Inoue, Akiho Yokota, Tadahiko Mae, Yasushi Kai. Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate. Journal of molecular biology. 2012 Sep; 422(1):75-86. doi: 10.1016/j.jmb.2012.05.014. [PMID: 22609438]
  • Paul John Andralojc, Pippa J Madgwick, Yong Tao, Alfred Keys, Jane L Ward, Michael H Beale, Jane E Loveland, Phil J Jackson, Antony C Willis, Steven Gutteridge, Martin A J Parry. 2-Carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase: evidence for a wider role in plant Rubisco regulation. The Biochemical journal. 2012 Mar; 442(3):733-42. doi: 10.1042/bj20111443. [PMID: 22132794]
  • Masanori Izumi, Honami Tsunoda, Yuji Suzuki, Amane Makino, Hiroyuki Ishida. RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity. Journal of experimental botany. 2012 Mar; 63(5):2159-70. doi: 10.1093/jxb/err434. [PMID: 22223809]
  • David S Kubien, Christopher M Brown, Heather J Kane. Quantifying the amount and activity of Rubisco in leaves. Methods in molecular biology (Clifton, N.J.). 2011; 684(?):349-62. doi: 10.1007/978-1-60761-925-3_27. [PMID: 20960142]
  • Karin Radrich, Yoshimasa Tsuruoka, Paul Dobson, Albert Gevorgyan, Neil Swainston, Gino Baart, Jean-Marc Schwartz. Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC systems biology. 2010 Aug; 4(?):114. doi: 10.1186/1752-0509-4-114. [PMID: 20712863]
  • A Elizabete Carmo-Silva, Alfred J Keys, P John Andralojc, Stephen J Powers, M Celeste Arrabaça, Martin A J Parry. Rubisco activities, properties, and regulation in three different C4 grasses under drought. Journal of experimental botany. 2010 May; 61(9):2355-66. doi: 10.1093/jxb/erq071. [PMID: 20363871]
  • H Eichelmann, E Talts, V Oja, E Padu, A Laisk. Rubisco in planta kcat is regulated in balance with photosynthetic electron transport. Journal of experimental botany. 2009; 60(14):4077-88. doi: 10.1093/jxb/erp242. [PMID: 19661266]
  • Sriram Satagopan, Robert J Spreitzer. Plant-like substitutions in the large-subunit carboxy terminus of Chlamydomonas Rubisco increase CO2/O2 specificity. BMC plant biology. 2008 Jul; 8(?):85. doi: 10.1186/1471-2229-8-85. [PMID: 18664299]
  • F Grant Pearce. Catalytic by-product formation and ligand binding by ribulose bisphosphate carboxylases from different phylogenies. The Biochemical journal. 2006 Nov; 399(3):525-34. doi: 10.1042/bj20060430. [PMID: 16822231]
  • F Grant Pearce, T John Andrews. The relationship between side reactions and slow inhibition of ribulose-bisphosphate carboxylase revealed by a loop 6 mutant of the tobacco enzyme. The Journal of biological chemistry. 2003 Aug; 278(35):32526-36. doi: 10.1074/jbc.m305493200. [PMID: 12783874]
  • Martin A J Parry, P John Andralojc, Shahnaz Khan, Peter J Lea, Alfred J Keys. Rubisco activity: effects of drought stress. Annals of botany. 2002 Jun; 89 Spec No(?):833-9. doi: 10.1093/aob/mcf103. [PMID: 12102509]
  • Eiichi Mizohata, Hiroyoshi Matsumura, Yousuke Okano, Maki Kumei, Hiroki Takuma, Jun Onodera, Ko Kato, Naoki Shibata, Tsuyoshi Inoue, Akiho Yokota, Yasushi Kai. Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. Journal of molecular biology. 2002 Feb; 316(3):679-91. doi: 10.1006/jmbi.2001.5381. [PMID: 11866526]
  • P J Andralojc, A J Keys, W Martindale, G W Dawson, M A Parry. Conversion of D-hamamelose into 2-carboxy-D-arabinitol and 2-carboxy-D-arabinitol 1-phosphate in leaves of Phaseolus vulgaris L. The Journal of biological chemistry. 1996 Oct; 271(43):26803-9. doi: 10.1074/jbc.271.43.26803. [PMID: 8900161]
  • P J Andralojc, G W Dawson, M A Parry, A J Keys. Incorporation of carbon from photosynthetic products into 2-carboxyarabinitol-1-phosphate and 2-carboxyarabinitol. The Biochemical journal. 1994 Dec; 304 ( Pt 3)(?):781-6. doi: 10.1042/bj3040781. [PMID: 7818481]