Ribitol 5-phosphate (BioDeep_00000004560)

 

Secondary id: BioDeep_00001870173


代谢物信息卡片


D-Ribitol-5-phosphate

化学式: C5H13O8P (232.0348)
中文名称: D-核糖醇-5-磷酸
谱图信息: 最多检出来源 Viridiplantae(plant) 15.86%

分子结构信息

SMILES: C(C(C(C(COP(=O)(O)O)O)O)O)O
InChI: InChI=1S/C5H13O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1



数据库引用编号

13 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 AKR1B1, DAG1, DMD, FKRP, FKTN, GCK
Peripheral membrane protein 3 DMD, GCK, RDX
Endoplasmic reticulum membrane 1 CD4
Nucleus 4 DMD, FKTN, GCK, OMP
cytosol 9 AKR1A1, AKR1B1, AKR1C1, CRPPA, DAG1, DMD, FKRP, GCK, OMP
nucleoplasm 4 AKR1B1, DAG1, FKRP, GCK
Cell membrane 2 CD4, RDX
Cytoplasmic side 2 DMD, RDX
Cleavage furrow 1 RDX
lamellipodium 2 DAG1, RDX
Early endosome membrane 1 CD207
Multi-pass membrane protein 2 SLC35A1, SLC35A4
Golgi apparatus membrane 8 B4GAT1, FKRP, FKTN, GCK, LARGE1, SLC35A1, SLC35A4, XYLT1
Synapse 3 AKR1A1, DMD, OMP
cell surface 2 C3, DMD
glutamatergic synapse 1 DAG1
Golgi apparatus 6 B4GAT1, FKRP, FKTN, LARGE1, SLC35A1, SLC35A4
Golgi membrane 8 B4GAT1, FKRP, FKTN, GCK, LARGE1, SLC35A1, SLC35A4, XYLT1
mitochondrial inner membrane 1 SLC35A4
neuromuscular junction 1 LARGE1
neuronal cell body 1 OMP
sarcolemma 3 DAG1, DMD, FKRP
Cytoplasm, cytosol 3 AKR1A1, AKR1C1, CRPPA
plasma membrane 8 C3, CD207, CD4, DAG1, DMD, LARGE1, RDX, SLC35A1
Membrane 10 CD207, DAG1, DMD, FKRP, FKTN, LARGE1, RDX, SLC35A1, TARP, XYLT1
apical plasma membrane 2 AKR1A1, RDX
axon 1 OMP
basolateral plasma membrane 2 DAG1, GCK
extracellular exosome 7 AKR1A1, AKR1B1, AKR1C1, B4GAT1, C3, DAG1, RDX
endoplasmic reticulum 1 FKTN
extracellular space 8 AKR1A1, AKR1B1, C3, DAG1, FKRP, FKTN, RDX, XYLT1
adherens junction 2 DAG1, RDX
mitochondrion 3 AKR1B1, GCK, SLC35A4
protein-containing complex 3 C3, DMD, LARGE1
intracellular membrane-bounded organelle 1 DAG1
filopodium 3 DAG1, DMD, RDX
Single-pass type I membrane protein 1 CD4
Secreted 3 C3, FKRP, XYLT1
extracellular region 2 C3, DAG1
Single-pass membrane protein 1 SLC35A4
external side of plasma membrane 3 CD207, CD4, DAG1
T-tubule 1 RDX
Z disc 1 DMD
midbody 1 RDX
Early endosome 1 CD4
apical part of cell 1 RDX
Single-pass type II membrane protein 6 B4GAT1, CD207, FKRP, FKTN, LARGE1, XYLT1
postsynaptic membrane 2 DAG1, DMD
Apical cell membrane 1 AKR1A1
Cell membrane, sarcolemma 3 DAG1, DMD, FKRP
Mitochondrion inner membrane 1 SLC35A4
Membrane raft 2 CD4, DMD
Cytoplasm, cytoskeleton 2 DMD, RDX
focal adhesion 2 DAG1, RDX
GABA-ergic synapse 1 DAG1
cis-Golgi network 1 FKTN
basement membrane 1 DAG1
collagen-containing extracellular matrix 1 DAG1
Nucleus outer membrane 1 DMD
nuclear outer membrane 1 DMD
Postsynaptic cell membrane 2 DAG1, DMD
cell projection 1 RDX
cell periphery 1 RDX
cytoskeleton 3 DAG1, DMD, RDX
blood microparticle 1 C3
Basolateral cell membrane 1 GCK
microvillus 1 RDX
Cell projection, stereocilium 1 RDX
Cell projection, microvillus 1 RDX
Nucleus, nucleoplasm 1 DAG1
filopodium membrane 1 DMD
plasma membrane raft 1 DAG1
secretory granule lumen 1 C3
Golgi lumen 1 DAG1
endoplasmic reticulum lumen 3 C3, CD4, DAG1
cortical actin cytoskeleton 1 RDX
endocytic vesicle 1 CD207
node of Ranvier 1 DAG1
azurophil granule lumen 1 C3
Single-pass type IV membrane protein 1 DMD
cell tip 1 RDX
clathrin-coated endocytic vesicle membrane 2 CD207, CD4
costamere 2 DAG1, DMD
dystrophin-associated glycoprotein complex 2 DAG1, DMD
Rough endoplasmic reticulum 1 FKRP
contractile ring 1 DAG1
postsynaptic cytosol 1 DAG1
cell-substrate junction 1 DMD
nuclear periphery 1 DAG1
T cell receptor complex 1 CD4
neuron projection terminus 1 DMD
photoreceptor ribbon synapse 1 DAG1
syntrophin complex 1 DMD
stereocilium base 1 RDX
Golgi cis cisterna 1 XYLT1
[Beta-dystroglycan]: Cell membrane 1 DAG1
dystroglycan complex 1 DAG1
skeletal muscle myofibril 1 FKRP
organelle 1 DMD
plasma membrane bounded cell projection 1 DMD


文献列表

  • Jinghua Yang, Mary Ritchey, Yasuo Yoshida, C Allen Bush, John O Cisar. Comparative structural and molecular characterization of ribitol-5-phosphate-containing Streptococcus oralis coaggregation receptor polysaccharides. Journal of bacteriology. 2009 Mar; 191(6):1891-900. doi: 10.1128/jb.01532-08. [PMID: 19151140]