Vibriobactin (BioDeep_00000004351)

   

natural product


代谢物信息卡片


(4s,5r)-N-{3-[(2,3-Dihydroxybenzoyl)amino]propyl}-2-(2,3-Dihydroxyphenyl)-N-[3-({[(4s,5r)-2-(2,3-Dihydroxyphenyl)-5-Methyl-4,5-Dihydro-1,3-Oxazol-4-Yl]carbonyl}amino)propyl]-5-Methyl-4,5-Dihydro-1,3-Oxazole-4-Carboxamide

  化学式: C35H39N5O11 (705.2646)
中文名称:
  谱图信息: 最多检出来源 Viridiplantae(natural_products) 3.58%

分子结构信息

SMILES: CC1C(N=C(O1)C2=C(C(=CC=C2)O)O)C(=O)NCCCN(CCCNC(=O)C3=C(C(=CC=C3)O)O)C(=O)C4C(OC(=N4)C5=C(C(=CC=C5)O)O)C
InChI: InChI=1S/C35H39N5O11/c1-18-26(38-33(50-18)21-9-4-12-24(42)29(21)45)32(48)37-15-7-17-40(16-6-14-36-31(47)20-8-3-11-23(41)28(20)44)35(49)27-19(2)51-34(39-27)22-10-5-13-25(43)30(22)46/h3-5,8-13,18-19,26-27,41-46H,6-7,14-17H2,1-2H3,(H,36,47)(H,37,48)/t18-,19+,26+,27-/m0/s1



数据库引用编号

11 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome()

BioCyc()

PlantCyc()

代谢反应

个相关的代谢反应过程信息。

Reactome()

BioCyc()

WikiPathways()

Plant Reactome()

INOH()

PlantCyc()

COVID-19 Disease Map()

PathBank()

PharmGKB()

个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 4 ARMC1, FES, HELB, PLAAT1
Endosome membrane 1 TF
Nucleus 3 HELB, PLAAT1, ZRANB3
cytosol 4 ARMC1, FES, HELB, PLAAT1
nuclear body 1 HELB
nucleoplasm 3 ATP2B1, HELB, ZRANB3
Cell membrane 2 ATP2B1, KCNV1
Multi-pass membrane protein 2 ATP2B1, KCNV1
Synapse 1 ATP2B1
cell surface 1 TF
glutamatergic synapse 1 ATP2B1
Golgi apparatus 1 FES
presynaptic membrane 1 ATP2B1
Lysosome 1 PLAAT1
plasma membrane 4 ATP2B1, FES, KCNV1, TF
synaptic vesicle membrane 1 ATP2B1
Membrane 4 ATP2B1, FES, KCNV1, PLAAT1
apical plasma membrane 1 TF
basolateral plasma membrane 1 ATP2B1
extracellular exosome 3 ATP2B1, LCN2, TF
endoplasmic reticulum 1 PLAAT1
extracellular space 2 LCN2, TF
perinuclear region of cytoplasm 1 TF
mitochondrion 3 ARMC1, HELB, PLAAT1
intracellular membrane-bounded organelle 1 ATP2B1
Secreted 2 LCN2, TF
extracellular region 2 LCN2, TF
cytoplasmic side of plasma membrane 1 FES
Mitochondrion outer membrane 1 ARMC1
Single-pass membrane protein 1 PLAAT1
mitochondrial outer membrane 1 ARMC1
basal part of cell 1 TF
[Isoform 1]: Membrane 1 PLAAT1
Cytoplasmic vesicle lumen 1 LCN2
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 ATP2B1
cytoplasmic vesicle 2 FES, TF
microtubule cytoskeleton 1 FES
Early endosome 1 TF
clathrin-coated pit 1 TF
recycling endosome 1 TF
vesicle 1 TF
Cytoplasm, cytoskeleton 1 FES
focal adhesion 1 FES
lateral plasma membrane 1 ATP2B1
Late endosome 1 TF
cell projection 1 ATP2B1
Chromosome 2 HELB, ZRANB3
cytoskeleton 1 FES
nuclear replication fork 1 ZRANB3
blood microparticle 1 TF
Basolateral cell membrane 1 ATP2B1
site of double-strand break 1 HELB
intercellular bridge 1 KCNV1
Endomembrane system 1 KCNV1
Presynaptic cell membrane 1 ATP2B1
basal plasma membrane 1 TF
voltage-gated potassium channel complex 1 KCNV1
secretory granule lumen 1 TF
HFE-transferrin receptor complex 1 TF
endoplasmic reticulum lumen 1 TF
specific granule lumen 1 LCN2
endocytic vesicle 1 TF
immunological synapse 1 ATP2B1
nuclear envelope lumen 1 PLAAT1
clathrin-coated endocytic vesicle membrane 1 TF
[Isoform 2]: Nucleus 1 PLAAT1
vesicle coat 1 TF
photoreceptor ribbon synapse 1 ATP2B1
dense body 1 TF
Cytoplasmic granule lumen 1 LCN2


文献列表

  • Raymond J Bergeron, Neelam Bharti, Shailendra Singh, James S McManis, Jan Wiegand, Linda G Green. Vibriobactin antibodies: a vaccine strategy. Journal of medicinal chemistry. 2009 Jun; 52(12):3801-13. doi: 10.1021/jm900119q. [PMID: 19492834]


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