(2R,3Z)-Phycocyanobilin (BioDeep_00001870474)

Main id: BioDeep_00000005950

 


代谢物信息卡片


(2R,3Z)-Phycocyanobilin

化学式: C33H38N4O6 (586.2791)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CCC1=C(C(=NC1=O)C=C2C(=C(C(=CC3=C(C(=C(N3)C=C4C(=CC)C(C(=O)N4)C)C)CCC(=O)O)N2)CCC(=O)O)C)C
InChI: InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7,13-15,19,34-35H,8-12H2,1-6H3,(H,37,42)(H,38,39)(H,40,41)/b20-7-,24-13-,27-14-,28-15-/t19-/m1/s1

描述信息

同义名列表

1 个代谢物同义名

(2R,3Z)-Phycocyanobilin



数据库引用编号

7 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 CAT, GUCY1A1, KEAP1, NFE2L2, NOS3, PTGS2
Peripheral membrane protein 4 FDXR, HSD17B6, MBP, PTGS2
Endoplasmic reticulum membrane 3 CYBB, HMOX1, PTGS2
Nucleus 7 HMOX1, KEAP1, MBP, MPO, NFE2L2, NOS3, PCNA
cytosol 8 CAT, GUCY1A1, HMOX1, KEAP1, MB, MBP, NFE2L2, NOS3
dendrite 1 CYBB
nuclear body 1 PCNA
phagocytic vesicle 1 CYBB
centrosome 2 NFE2L2, PCNA
nucleoplasm 6 HMOX1, KEAP1, MPO, NFE2L2, NOS3, PCNA
RNA polymerase II transcription regulator complex 1 NFE2L2
Cell membrane 4 CYBB, LINGO1, SLC38A5, TNF
Cytoplasmic side 2 HMOX1, MBP
Early endosome membrane 1 HSD17B6
Multi-pass membrane protein 2 CYBB, SLC38A5
Synapse 1 MBP
cell surface 2 MBP, TNF
glutamatergic synapse 1 GUCY1A1
Golgi apparatus 2 NFE2L2, NOS3
Golgi membrane 1 NOS3
mitochondrial inner membrane 1 FDXR
neuronal cell body 3 CYBB, MBP, TNF
Cytoplasm, cytosol 1 NFE2L2
Lysosome 1 MPO
plasma membrane 7 CYBB, LINGO1, MBP, NFE2L2, NOS3, SLC38A5, TNF
Membrane 4 CAT, CYBB, HMOX1, SLC38A5
caveola 2 NOS3, PTGS2
extracellular exosome 5 CAT, MB, MBP, MPO, PCNA
Lumenal side 1 HSD17B6
endoplasmic reticulum 4 HMOX1, HSD17B6, KEAP1, PTGS2
extracellular space 7 HMOX1, IL17A, IL4, IL6, LINGO1, MPO, TNF
perinuclear region of cytoplasm 2 HMOX1, NOS3
mitochondrion 2 CAT, FDXR
protein-containing complex 3 CAT, MBP, PTGS2
intracellular membrane-bounded organelle 3 CAT, HSD17B6, MPO
Microsome membrane 2 HSD17B6, PTGS2
Single-pass type I membrane protein 1 LINGO1
Secreted 3 IL17A, IL4, IL6
extracellular region 7 CAT, IL17A, IL4, IL6, MBP, MPO, TNF
mitochondrial outer membrane 1 HMOX1
mitochondrial matrix 2 CAT, FDXR
centriolar satellite 1 KEAP1
external side of plasma membrane 2 IL17A, TNF
midbody 1 KEAP1
sarcoplasm 1 MB
Cytoplasm, P-body 1 NOS3
P-body 1 NOS3
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Mitochondrion inner membrane 1 FDXR
Membrane raft 1 TNF
focal adhesion 1 CAT
GABA-ergic synapse 1 GUCY1A1
extracellular matrix 1 LINGO1
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
collagen-containing extracellular matrix 1 MBP
secretory granule 1 MPO
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 1 PTGS2
nuclear outer membrane 1 PTGS2
neuron projection 1 PTGS2
chromatin 2 NFE2L2, PCNA
mediator complex 1 NFE2L2
phagocytic cup 1 TNF
phagocytic vesicle membrane 1 CYBB
cell periphery 1 MBP
cytoskeleton 1 NOS3
[Isoform 3]: Nucleus 1 MBP
nuclear replication fork 1 PCNA
chromosome, telomeric region 1 PCNA
actin filament 1 KEAP1
Cul3-RING ubiquitin ligase complex 1 KEAP1
nuclear envelope 1 CYBB
monoatomic ion channel complex 1 CYBB
specific granule membrane 1 CYBB
tertiary granule membrane 1 CYBB
Cytoplasm, Stress granule 1 NOS3
cytoplasmic stress granule 1 NOS3
replication fork 1 PCNA
myelin sheath 1 MBP
azurophil granule 1 MPO
ficolin-1-rich granule lumen 2 CAT, MBP
secretory granule lumen 1 CAT
endoplasmic reticulum lumen 2 IL6, PTGS2
male germ cell nucleus 1 PCNA
endocytic vesicle membrane 1 NOS3
transport vesicle 1 MBP
azurophil granule lumen 1 MPO
Single-pass type IV membrane protein 1 HMOX1
perinuclear endoplasmic reticulum 1 CYBB
nuclear lamina 1 PCNA
phagocytic vesicle lumen 1 MPO
protein-DNA complex 1 NFE2L2
guanylate cyclase complex, soluble 1 GUCY1A1
cyclin-dependent protein kinase holoenzyme complex 1 PCNA
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
Cytoplasm, sarcoplasm 1 MB
compact myelin 1 MBP
internode region of axon 1 MBP
catalase complex 1 CAT
inclusion body 1 KEAP1
NADPH oxidase complex 1 CYBB
interleukin-6 receptor complex 1 IL6
PCNA complex 1 PCNA
PCNA-p21 complex 1 PCNA
replisome 1 PCNA
[Bone marrow proteoglycan]: Secreted 1 MBP
Myelin membrane 1 MBP
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Yi Li. The Bioactivities of Phycocyanobilin from Spirulina. Journal of immunology research. 2022; 2022(?):4008991. doi: 10.1155/2022/4008991. [PMID: 35726224]
  • Manisha Banerjee, Prakash Kalwani, Dhiman Chakravarty, Beena Singh, Anand Ballal. Functional and mechanistic insights into the differential effect of the toxicant 'Se(IV)' in the cyanobacterium Anabaena PCC 7120. Aquatic toxicology (Amsterdam, Netherlands). 2021 Jul; 236(?):105839. doi: 10.1016/j.aquatox.2021.105839. [PMID: 34015754]
  • Takanari Kamo, Toshihiko Eki, Yuu Hirose. Pressurized Liquid Extraction of a Phycocyanobilin Chromophore and Its Reconstitution with a Cyanobacteriochrome Photosensor for Efficient Isotopic Labeling. Plant & cell physiology. 2021 May; 62(2):334-347. doi: 10.1093/pcp/pcaa164. [PMID: 33386854]
  • Erick Garcia-Pliego, Margarita Franco-Colin, Plácido Rojas-Franco, Vanessa Blas-Valdivia, Jose Ivan Serrano-Contreras, Giselle Pentón-Rol, Edgar Cano-Europa. Phycocyanobilin is the molecule responsible for the nephroprotective action of phycocyanin in acute kidney injury caused by mercury. Food & function. 2021 Apr; 12(7):2985-2994. doi: 10.1039/d0fo03294h. [PMID: 33704296]
  • Giselle Pentón-Rol, Javier Marín-Prida, Mark F McCarty. C-Phycocyanin-derived Phycocyanobilin as a Potential Nutraceutical Approach for Major Neurodegenerative Disorders and COVID-19- induced Damage to the Nervous System. Current neuropharmacology. 2021; 19(12):2250-2275. doi: 10.2174/1570159x19666210408123807. [PMID: 33829974]
  • Beatriz Piniella- Matamoros, Javier Marin- Prida, Giselle Penton- Rol. Nutraceutical and therapeutic potential of Phycocyanobilin for treating Alzheimer's disease. Journal of biosciences. 2021; 46(?):. doi: . [PMID: 34047285]
  • Fangfang Wang, Jun Fang, Kaoling Guan, Shengji Luo, Vivek Dogra, Bingqi Li, Demin Ma, Xinyan Zhao, Keun Pyo Lee, Pengkai Sun, Jian Xin, Tong Liu, Weiman Xing, Chanhong Kim. The Arabidopsis CRUMPLED LEAF protein, a homolog of the cyanobacterial bilin lyase, retains the bilin-binding pocket for a yet unknown function. The Plant journal : for cell and molecular biology. 2020 11; 104(4):964-978. doi: 10.1111/tpj.14974. [PMID: 32860438]
  • Lena Hochrein, Leslie A Mitchell, Karina Schulz, Katrin Messerschmidt, Bernd Mueller-Roeber. L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast. Nature communications. 2018 05; 9(1):1931. doi: 10.1038/s41467-017-02208-6. [PMID: 29789561]
  • Majel Cervantes-Llanos, Nielsen Lagumersindez-Denis, Javier Marín-Prida, Nancy Pavón-Fuentes, Viviana Falcon-Cama, Beatriz Piniella-Matamoros, Hanlet Camacho-Rodríguez, Julio Raúl Fernández-Massó, Carmen Valenzuela-Silva, Ivette Raíces-Cruz, Eduardo Pentón-Arias, Mauro Martins Teixeira, Giselle Pentón-Rol. Beneficial effects of oral administration of C-Phycocyanin and Phycocyanobilin in rodent models of experimental autoimmune encephalomyelitis. Life sciences. 2018 Feb; 194(?):130-138. doi: 10.1016/j.lfs.2017.12.032. [PMID: 29287781]
  • Simeon Minic, Dragana Stanic-Vucinic, Mirjana Radomirovic, Milica Radibratovic, Milos Milcic, Milan Nikolic, Tanja Cirkovic Velickovic. Characterization and effects of binding of food-derived bioactive phycocyanobilin to bovine serum albumin. Food chemistry. 2018 Jan; 239(?):1090-1099. doi: 10.1016/j.foodchem.2017.07.066. [PMID: 28873526]
  • Mark F McCarty, Simon Iloki-Assanga. Co-administration of Phycocyanobilin and/or Phase 2-Inducer Nutraceuticals for Prevention of Opiate Tolerance. Current pharmaceutical design. 2018; 24(20):2250-2254. doi: 10.2174/1381612824666180723162730. [PMID: 30039753]
  • Youichi Uda, Yuhei Goto, Shigekazu Oda, Takayuki Kohchi, Michiyuki Matsuda, Kazuhiro Aoki. Efficient synthesis of phycocyanobilin in mammalian cells for optogenetic control of cell signaling. Proceedings of the National Academy of Sciences of the United States of America. 2017 11; 114(45):11962-11967. doi: 10.1073/pnas.1707190114. [PMID: 29078307]
  • Lena Hochrein, Fabian Machens, Katrin Messerschmidt, Bernd Mueller-Roeber. PhiReX: a programmable and red light-regulated protein expression switch for yeast. Nucleic acids research. 2017 Sep; 45(15):9193-9205. doi: 10.1093/nar/gkx610. [PMID: 28911120]
  • Nathan C Rockwell, Shelley S Martin, Fay-Wei Li, Sarah Mathews, John Clark Lagarias. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. The New phytologist. 2017 May; 214(3):1145-1157. doi: 10.1111/nph.14422. [PMID: 28106912]
  • Milica Radibratovic, Simeon Minic, Dragana Stanic-Vucinic, Milan Nikolic, Milos Milcic, Tanja Cirkovic Velickovic. Stabilization of Human Serum Albumin by the Binding of Phycocyanobilin, a Bioactive Chromophore of Blue-Green Alga Spirulina: Molecular Dynamics and Experimental Study. PloS one. 2016; 11(12):e0167973. doi: 10.1371/journal.pone.0167973. [PMID: 27959940]
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  • Katrin Anders, Grazia Daminelli-Widany, Maria Andrea Mroginski, David von Stetten, Lars-Oliver Essen. Structure of the cyanobacterial phytochrome 2 photosensor implies a tryptophan switch for phytochrome signaling. The Journal of biological chemistry. 2013 Dec; 288(50):35714-25. doi: 10.1074/jbc.m113.510461. [PMID: 24174528]
  • Zbynek Strasky, Lenka Zemankova, Ivana Nemeckova, Jana Rathouska, Ronald J Wong, Lucie Muchova, Iva Subhanova, Jana Vanikova, Katerina Vanova, Libor Vitek, Petr Nachtigal. Spirulina platensis and phycocyanobilin activate atheroprotective heme oxygenase-1: a possible implication for atherogenesis. Food & function. 2013 Nov; 4(11):1586-94. doi: 10.1039/c3fo60230c. [PMID: 24056745]
  • Deqiang Duanmu, David Casero, Rachel M Dent, Sean Gallaher, Wenqiang Yang, Nathan C Rockwell, Shelley S Martin, Matteo Pellegrini, Krishna K Niyogi, Sabeeha S Merchant, Arthur R Grossman, J Clark Lagarias. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proceedings of the National Academy of Sciences of the United States of America. 2013 Feb; 110(9):3621-6. doi: 10.1073/pnas.1222375110. [PMID: 23345435]
  • Jing Zheng, Toyoshi Inoguchi, Shuji Sasaki, Yasutaka Maeda, Mark F McCarty, Masakazu Fujii, Noriko Ikeda, Kunihisa Kobayashi, Noriyuki Sonoda, Ryoichi Takayanagi. Phycocyanin and phycocyanobilin from Spirulina platensis protect against diabetic nephropathy by inhibiting oxidative stress. American journal of physiology. Regulatory, integrative and comparative physiology. 2013 Jan; 304(2):R110-20. doi: 10.1152/ajpregu.00648.2011. [PMID: 23115122]
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  • Rei Narikawa, Fumiko Suzuki, Shizue Yoshihara, Sho-ichi Higashi, Masakatsu Watanabe, Masahiko Ikeuchi. Novel photosensory two-component system (PixA-NixB-NixC) involved in the regulation of positive and negative phototaxis of cyanobacterium Synechocystis sp. PCC 6803. Plant & cell physiology. 2011 Dec; 52(12):2214-24. doi: 10.1093/pcp/pcr155. [PMID: 22065076]
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  • Maria Andrea Mroginski, Steve Kaminski, David von Stetten, Simone Ringsdorf, Wolfgang Gärtner, Lars-Oliver Essen, Peter Hildebrandt. Structure of the chromophore binding pocket in the Pr state of plant phytochrome phyA. The journal of physical chemistry. B. 2011 Feb; 115(5):1220-31. doi: 10.1021/jp108265h. [PMID: 21192668]
  • Serena Benedetti, Francesca Benvenuti, Stefano Scoglio, Franco Canestrari. Oxygen radical absorbance capacity of phycocyanin and phycocyanobilin from the food supplement Aphanizomenon flos-aquae. Journal of medicinal food. 2010 Feb; 13(1):223-7. doi: 10.1089/jmf.2008.0257. [PMID: 20136460]
  • Mark F McCarty, Jorge Barroso-Aranda, Francisco Contreras. Genistein and phycocyanobilin may prevent hepatic fibrosis by suppressing proliferation and activation of hepatic stellate cells. Medical hypotheses. 2009 Mar; 72(3):330-2. doi: 10.1016/j.mehy.2008.07.045. [PMID: 18789597]
  • Daniel H Murgida, David von Stetten, Peter Hildebrandt, Pascale Schwinté, Friedrich Siebert, Shivani Sharda, Wolfgang Gärtner, Maria Andrea Mroginski. The chromophore structures of the Pr States in plant and bacterial phytochromes. Biophysical journal. 2007 Oct; 93(7):2410-7. doi: 10.1529/biophysj.107.108092. [PMID: 17545245]
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  • Shizue Yoshihara, Takashi Shimada, Daisuke Matsuoka, Kazunori Zikihara, Takayuki Kohchi, Satoru Tokutomi. Reconstitution of blue-green reversible photoconversion of a cyanobacterial photoreceptor, PixJ1, in phycocyanobilin-producing Escherichia coli. Biochemistry. 2006 Mar; 45(11):3775-84. doi: 10.1021/bi051983l. [PMID: 16533061]
  • Kai-Hong Zhao, Yong Ran, Mei Li, Ya-Nan Sun, Ming Zhou, Max Storf, Michaela Kupka, Stefan Böhm, Claudia Bubenzer, Hugo Scheer. Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA. Biochemistry. 2004 Sep; 43(36):11576-88. doi: 10.1021/bi0491548. [PMID: 15350144]
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  • Karsten Heyne, Johannes Herbst, Dietmar Stehlik, Berta Esteban, Tilman Lamparter, Jon Hughes, Rolf Diller. Ultrafast dynamics of phytochrome from the cyanobacterium synechocystis, reconstituted with phycocyanobilin and phycoerythrobilin. Biophysical journal. 2002 Feb; 82(2):1004-16. doi: 10.1016/s0006-3495(02)75460-x. [PMID: 11806940]
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