Graphinone (BioDeep_00001870069)

Main id: BioDeep_00000007535

 

natural product


代谢物信息卡片


Graphinone

化学式: C16H24O5 (296.1624)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC(=CCC1C(O1)(C)C2(C(C(=O)CCC23CO3)OC)O)C
InChI: InChI=1S/C16H24O5/c1-10(2)5-6-12-14(3,21-12)16(18)13(19-4)11(17)7-8-15(16)9-20-15/h5,12-13,18H,6-9H2,1-4H3/t12?,13-,14+,15+,16+/m1/s1

描述信息

同义名列表

2 个代谢物同义名

Graphinone; Graphinone



数据库引用编号

10 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(1)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

13 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 11 ANG, GAPDH, JAK2, METAP1, METAP2, NFKBIA, PIK3C3, PPIA, S100A4, SDF4, SKP1
Peripheral membrane protein 1 JAK2
Cytoplasmic vesicle, autophagosome 1 PIK3C3
Nucleus 7 ANG, GAPDH, JAK2, NFKBIA, PPIA, S100A4, SKP1
autophagosome 1 PIK3C3
cytosol 10 ANG, GAPDH, JAK2, METAP1, METAP2, NFKBIA, PIK3C3, PPIA, S100A4, SKP1
dendrite 1 HRH2
phosphatidylinositol 3-kinase complex, class III 1 PIK3C3
centrosome 1 SKP1
nucleoplasm 4 JAK2, NFKBIA, S100A4, SKP1
Cell membrane 3 HRH2, SDF4, TRPV1
Multi-pass membrane protein 2 HRH2, TRPV1
Synapse 1 HRH2
glutamatergic synapse 2 JAK2, PIK3C3
Golgi apparatus 1 SDF4
growth cone 1 ANG
neuronal cell body 2 ANG, TRPV1
postsynapse 1 JAK2
Cytoplasm, cytosol 1 GAPDH
endosome 1 PIK3C3
plasma membrane 7 GAPDH, HRH2, JAK2, METAP2, NFKBIA, SDF4, TRPV1
Membrane 6 GAPDH, JAK2, PIK3C3, PPIA, SDF4, TRPV1
caveola 1 JAK2
extracellular exosome 4 GAPDH, PPIA, S100A4, SDF4
endoplasmic reticulum 1 SDF4
extracellular space 4 ANG, IL31, PPIA, S100A4
perinuclear region of cytoplasm 2 GAPDH, S100A4
protein-containing complex 1 PPIA
intracellular membrane-bounded organelle 1 GAPDH
Secreted 4 ANG, IL31, PPIA, S100A4
extracellular region 4 ANG, IL31, PPIA, S100A4
cytoplasmic side of plasma membrane 1 JAK2
nuclear membrane 1 GAPDH
external side of plasma membrane 1 TRPV1
actin cytoskeleton 1 ANG
microtubule cytoskeleton 1 GAPDH
nucleolus 1 ANG
midbody 1 PIK3C3
vesicle 2 GAPDH, PPIA
postsynaptic membrane 1 TRPV1
Cytoplasm, perinuclear region 1 GAPDH
Membrane raft 1 JAK2
Cytoplasm, cytoskeleton 1 GAPDH
focal adhesion 2 JAK2, PPIA
GABA-ergic synapse 2 PIK3C3, TRPV1
Peroxisome 1 PIK3C3
basement membrane 1 ANG
collagen-containing extracellular matrix 1 S100A4
axoneme 1 PIK3C3
Postsynaptic cell membrane 1 TRPV1
Late endosome 2 PIK3C3, SDF4
Cell projection, neuron projection 1 TRPV1
phagocytic vesicle membrane 1 PIK3C3
Chromosome 1 ANG
cytoskeleton 2 GAPDH, JAK2
[Isoform 5]: Cytoplasm 1 SDF4
Nucleus, nucleolus 1 ANG
Endomembrane system 1 JAK2
endosome lumen 1 JAK2
Lipid droplet 1 GAPDH
phagophore assembly site 1 PIK3C3
phosphatidylinositol 3-kinase complex, class III, type I 1 PIK3C3
phosphatidylinositol 3-kinase complex, class III, type II 1 PIK3C3
Cytoplasm, Stress granule 1 ANG
cytoplasmic stress granule 1 ANG
euchromatin 1 JAK2
ficolin-1-rich granule lumen 1 PPIA
secretory granule lumen 1 PPIA
Golgi apparatus lumen 1 SDF4
Golgi lumen 1 SDF4
PcG protein complex 1 SKP1
endocytic vesicle 1 ANG
presynaptic endosome 1 PIK3C3
ribonucleoprotein complex 1 GAPDH
extrinsic component of cytoplasmic side of plasma membrane 1 JAK2
GAIT complex 1 GAPDH
cytosolic ribosome 1 METAP1
extrinsic component of plasma membrane 1 JAK2
granulocyte macrophage colony-stimulating factor receptor complex 1 JAK2
interleukin-12 receptor complex 1 JAK2
interleukin-23 receptor complex 1 JAK2
Cell projection, dendritic spine membrane 1 TRPV1
dendritic spine membrane 1 TRPV1
postsynaptic endosome 1 PIK3C3
bleb 1 SDF4
Autolysosome 1 PIK3C3
angiogenin-PRI complex 1 ANG
SCF ubiquitin ligase complex 1 SKP1
I-kappaB/NF-kappaB complex 1 NFKBIA
Cul7-RING ubiquitin ligase complex 1 SKP1
[Isoform 1]: Golgi apparatus lumen 1 SDF4


文献列表

  • Yanlei Sun, Bo Chen, Xinlin Li, Ying Yin, Chengshu Wang. Orchestrated Biosynthesis of the Secondary Metabolite Cocktails Enables the Producing Fungus to Combat Diverse Bacteria. mBio. 2022 10; 13(5):e0180022. doi: 10.1128/mbio.01800-22. [PMID: 36000736]