D-Ribulose 1,5-bisphosphate (BioDeep_00000413273)

Main id: BioDeep_00000003418

 

PANOMIX_OTCML-2023


代谢物信息卡片


D-Ribulose 1,5-bisphosphate

化学式: C5H12O11P2 (309.98548619999997)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C(C(C(C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O
InChI: InChI=1S/C10H17Cl2NO5/c1-5(2)6(13-9(16)18-4)7(14)10(11,12)8(15)17-3/h5-7,14H,1-4H3,(H,13,16)

描述信息

A ribulose phosphate that is D-ribulose attached to phosphate groups at positions 1 and 5. It is an intermediate in photosynthesis.

同义名列表

1 个代谢物同义名

D-Ribulose 1,5-bisphosphate



数据库引用编号

15 个数据库交叉引用编号

分类词条

相关代谢途径

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BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

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PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Elżbieta Skiba, Monika Pietrzak, Sława Glińska, Wojciech M Wolf. The Combined Effect of ZnO and CeO2 Nanoparticles on Pisum sativum L.: A Photosynthesis and Nutrients Uptake Study. Cells. 2021 Nov; 10(11):. doi: 10.3390/cells10113105. [PMID: 34831328]
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  • Tongfu Su, Pengfei Wei, Lulu Wu, Yawen Guo, Wanqian Zhao, Yan Zhang, Zhiyong Chi, Liyou Qiu. Development of nucleic acid isolation by non-silica-based nanoparticles and real-time PCR kit for edible vegetable oil traceability. Food chemistry. 2019 Dec; 300(?):125205. doi: 10.1016/j.foodchem.2019.125205. [PMID: 31330372]
  • Yujiao Zhu, Ziyu Huang, Qingming Chen, Qian Wu, Xiaowen Huang, Pui-Kin So, Liyang Shao, Zhongping Yao, Yanwei Jia, Zhaohui Li, Weixing Yu, Yi Yang, Aoqun Jian, Shengbo Sang, Wendong Zhang, Xuming Zhang. Continuous artificial synthesis of glucose precursor using enzyme-immobilized microfluidic reactors. Nature communications. 2019 09; 10(1):4049. doi: 10.1038/s41467-019-12089-6. [PMID: 31492867]
  • Paul F South, Amanda P Cavanagh, Helen W Liu, Donald R Ort. Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field. Science (New York, N.Y.). 2019 01; 363(6422):. doi: 10.1126/science.aat9077. [PMID: 30606819]
  • Fei Ding, Qiannan Hu, Meiling Wang, Shuoxin Zhang. Knockout of SlSBPASE Suppresses Carbon Assimilation and Alters Nitrogen Metabolism in Tomato Plants. International journal of molecular sciences. 2018 Dec; 19(12):. doi: 10.3390/ijms19124046. [PMID: 30558146]
  • Laura H Gunn, Karin Valegård, Inger Andersson. A unique structural domain in Methanococcoides burtonii ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) acts as a small subunit mimic. The Journal of biological chemistry. 2017 04; 292(16):6838-6850. doi: 10.1074/jbc.m116.767145. [PMID: 28154188]
  • Peng-Fei Xia, Guo-Chang Zhang, Berkley Walker, Seung-Oh Seo, Suryang Kwak, Jing-Jing Liu, Heejin Kim, Donald R Ort, Shu-Guang Wang, Yong-Su Jin. Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae. ACS synthetic biology. 2017 02; 6(2):276-283. doi: 10.1021/acssynbio.6b00167. [PMID: 27744692]
  • Girish Kumar Rasineni, Pek Chin Loh, Boon Hoe Lim. Characterization of Chlamydomonas Ribulose-1,5-bisphosphate carboxylase/oxygenase variants mutated at residues that are post-translationally modified. Biochimica et biophysica acta. General subjects. 2017 Feb; 1861(2):79-85. doi: 10.1016/j.bbagen.2016.10.027. [PMID: 27816753]
  • Nitin Loganathan, Yi-Chin Candace Tsai, Oliver Mueller-Cajar. Characterization of the heterooligomeric red-type rubisco activase from red algae. Proceedings of the National Academy of Sciences of the United States of America. 2016 12; 113(49):14019-14024. doi: 10.1073/pnas.1610758113. [PMID: 27872295]
  • Bahtijor Rasulov, Eero Talts, Ülo Niinemets. Spectacular Oscillations in Plant Isoprene Emission under Transient Conditions Explain the Enigmatic CO2 Response. Plant physiology. 2016 12; 172(4):2275-2285. doi: 10.1104/pp.16.01002. [PMID: 27770061]
  • Teng Wei Koay, Hann Ling Wong, Boon Hoe Lim. Engineering of chimeric eukaryotic/bacterial Rubisco large subunits in Escherichia coli. Genes & genetic systems. 2016 Nov; 91(3):139-150. doi: 10.1266/ggs.15-00054. [PMID: 27301279]
  • Nikhil S Jaikumar, Sieglinde S Snapp, Thomas D Sharkey. Older Thinopyrum intermedium (Poaceae) plants exhibit superior photosynthetic tolerance to cold stress and greater increases in two photosynthetic enzymes under freezing stress compared with young plants. Journal of experimental botany. 2016 08; 67(15):4743-53. doi: 10.1093/jxb/erw253. [PMID: 27401911]
  • Youshi Tazoe, Takashi Sazuka, Miki Yamaguchi, Chieko Saito, Masahiro Ikeuchi, Keiichi Kanno, Soichi Kojima, Ko Hirano, Hideki Kitano, Shigemitsu Kasuga, Tsuyoshi Endo, Hiroo Fukuda, Amane Makino. Growth Properties and Biomass Production in the Hybrid C4 Crop Sorghum bicolor. Plant & cell physiology. 2016 May; 57(5):944-52. doi: 10.1093/pcp/pcv158. [PMID: 26508521]
  • Markus Sutter, Evan W Roberts, Raul C Gonzalez, Cassandra Bates, Salma Dawoud, Kimberly Landry, Gordon C Cannon, Sabine Heinhorst, Cheryl A Kerfeld. Structural Characterization of a Newly Identified Component of α-Carboxysomes: The AAA+ Domain Protein CsoCbbQ. Scientific reports. 2015 Nov; 5(?):16243. doi: 10.1038/srep16243. [PMID: 26538283]
  • Ladislav Šigut, Petra Holišová, Karel Klem, Mirka Šprtová, Carlo Calfapietra, Michal V Marek, Vladimír Špunda, Otmar Urban. Does long-term cultivation of saplings under elevated CO2 concentration influence their photosynthetic response to temperature?. Annals of botany. 2015 Nov; 116(6):929-39. doi: 10.1093/aob/mcv043. [PMID: 25851132]
  • Hao Lu, Wenqiao Yuan, Jack Zhou, Parkson Lee-Gau Chong. Glucose Synthesis in a Protein-Based Artificial Photosynthesis System. Applied biochemistry and biotechnology. 2015 Sep; 177(1):105-17. doi: 10.1007/s12010-015-1731-y. [PMID: 26170084]
  • Xingxue Huang, Guolin Zhou, Wengang Yang, Aihua Wang, Zhenhua Hu, Chufa Lin, Xin Chen. Drought-inhibited ribulose-1,5-bisphosphate carboxylase activity is mediated through increased release of ethylene and changes in the ratio of polyamines in pakchoi. Journal of plant physiology. 2014 Sep; 171(15):1392-400. doi: 10.1016/j.jplph.2014.06.007. [PMID: 25046760]
  • Shahniyar Bayramov, Novruz Guliyev. Changes in Rubisco activase gene expression and polypeptide content in Brachypodium distachyon. Plant physiology and biochemistry : PPB. 2014 Aug; 81(?):61-6. doi: 10.1016/j.plaphy.2014.01.013. [PMID: 24521715]
  • Lynne Whitehead, Benedict M Long, G Dean Price, Murray R Badger. Comparing the in vivo function of α-carboxysomes and β-carboxysomes in two model cyanobacteria. Plant physiology. 2014 May; 165(1):398-411. doi: 10.1104/pp.114.237941. [PMID: 24642960]
  • S-I Katahata, Q Han, M Naramoto, Y Kakubari, Y Mukai. Seasonal changes in temperature response of photosynthesis and its contribution to annual carbon gain in Daphniphyllum humile, an evergreen understorey shrub. Plant biology (Stuttgart, Germany). 2014 Mar; 16(2):345-53. doi: 10.1111/plb.12046. [PMID: 23731172]
  • Minaco Adachi, Toshihiro Hasegawa, Hiroshi Fukayama, Takeshi Tokida, Hidemitsu Sakai, Toshinori Matsunami, Hirofumi Nakamura, Ryoji Sameshima, Masumi Okada. Soil and water warming accelerates phenology and down-regulation of leaf photosynthesis of rice plants grown under free-air CO2 enrichment (FACE). Plant & cell physiology. 2014 Feb; 55(2):370-80. doi: 10.1093/pcp/pcu005. [PMID: 24406632]
  • Almaz Borjigidai, Gui-Rui Yu. [Temperature dependence of parameters of plant photosynthesis models: a review]. Ying yong sheng tai xue bao = The journal of applied ecology. 2013 Dec; 24(12):3588-94. doi: ". [PMID: 24697083]
  • Wei Zhang, Wei Huang, Qiu-Yun Yang, Shi-Bao Zhang, Hong Hu. Effect of growth temperature on the electron flow for photorespiration in leaves of tobacco grown in the field. Physiologia plantarum. 2013 Sep; 149(1):141-50. doi: 10.1111/ppl.12044. [PMID: 23480306]
  • Ljudmilla Borisjuk, Thomas Neuberger, Jörg Schwender, Nicolas Heinzel, Stephanie Sunderhaus, Johannes Fuchs, Jordan O Hay, Henning Tschiersch, Hans-Peter Braun, Peter Denolf, Bart Lambert, Peter M Jakob, Hardy Rolletschek. Seed architecture shapes embryo metabolism in oilseed rape. The Plant cell. 2013 May; 25(5):1625-40. doi: 10.1105/tpc.113.111740. [PMID: 23709628]
  • Andrew Benson. A conversation with Andrew Benson: reflections on the discovery of the Calvin-Benson cycle. Photosynthesis research. 2013 Mar; 114(3):207-14. doi: 10.1007/s11120-012-9790-1. [PMID: 23269523]
  • Guillaume G B Tcherkez, Camille Bathellier, Hilary Stuart-Williams, Spencer Whitney, Elisabeth Gout, Richard Bligny, Murray Badger, Graham D Farquhar. D2O solvent isotope effects suggest uniform energy barriers in ribulose-1,5-bisphosphate carboxylase/oxygenase catalysis. Biochemistry. 2013 Feb; 52(5):869-77. doi: 10.1021/bi300933u. [PMID: 23301499]
  • Cátia Nunes, Lucia F Primavesi, Mitul K Patel, Eleazar Martinez-Barajas, Stephen J Powers, Ram Sagar, Pedro S Fevereiro, Benjamin G Davis, Matthew J Paul. Inhibition of SnRK1 by metabolites: tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate. Plant physiology and biochemistry : PPB. 2013 Feb; 63(?):89-98. doi: 10.1016/j.plaphy.2012.11.011. [PMID: 23257075]
  • Peter C Loewen, Allison L Didychuk, Jacek Switala, Rosa Perez-Luque, Ignacio Fita, Michele C Loewen. Structure of Pisum sativum Rubisco with bound ribulose 1,5-bisphosphate. Acta crystallographica. Section F, Structural biology and crystallization communications. 2013 Jan; 69(Pt 1):10-4. doi: 10.1107/s1744309112047549. [PMID: 23295478]
  • Risako Akita, Chiho Kamiyama, Kouki Hikosaka. Polygonum sachalinense alters the balance between capacities of regeneration and carboxylation of ribulose-1,5-bisphosphate in response to growth CO2 increment but not the nitrogen allocation within the photosynthetic apparatus. Physiologia plantarum. 2012 Dec; 146(4):404-12. doi: 10.1111/j.1399-3054.2012.01631.x. [PMID: 22486715]
  • Stefan Timm, Alexandra Florian, Stephanie Arrivault, Mark Stitt, Alisdair R Fernie, Hermann Bauwe. Glycine decarboxylase controls photosynthesis and plant growth. FEBS letters. 2012 Oct; 586(20):3692-7. doi: 10.1016/j.febslet.2012.08.027. [PMID: 22982108]
  • Chunwu Zhu, Lewis Ziska, Jianguo Zhu, Qing Zeng, Zubing Xie, Haoyan Tang, Xiaodong Jia, Toshihiro Hasegawa. The temporal and species dynamics of photosynthetic acclimation in flag leaves of rice (Oryza sativa) and wheat (Triticum aestivum) under elevated carbon dioxide. Physiologia plantarum. 2012 Jul; 145(3):395-405. doi: 10.1111/j.1399-3054.2012.01581.x. [PMID: 22268610]
  • Vincent Maire, Pierre Martre, Jens Kattge, François Gastal, Gerd Esser, Sébastien Fontaine, Jean-François Soussana. The coordination of leaf photosynthesis links C and N fluxes in C3 plant species. PloS one. 2012; 7(6):e38345. doi: 10.1371/journal.pone.0038345. [PMID: 22685562]
  • Maxim V Kapralov, J Andrew C Smith, Dmitry A Filatov. Rubisco evolution in C₄ eudicots: an analysis of Amaranthaceae sensu lato. PloS one. 2012; 7(12):e52974. doi: 10.1371/journal.pone.0052974. [PMID: 23285238]
  • Vello Oja, Hillar Eichelmann, Agu Laisk. The size of the lumenal proton pool in leaves during induction and steady-state photosynthesis. Photosynthesis research. 2011 Dec; 110(2):73-88. doi: 10.1007/s11120-011-9697-2. [PMID: 22002818]
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  • Jindong Sun, Jisen Zhang, Clayton T Larue, Steven C Huber. Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration-limited photosynthesis but not Rubisco-limited photosynthesis in Arabidopsis null mutants of SPSA1. Plant, cell & environment. 2011 Apr; 34(4):592-604. doi: 10.1111/j.1365-3040.2010.02265.x. [PMID: 21309792]
  • Ana Sofia Soares-Cordeiro, Simon P Driscoll, Maria Celeste Arrabaça, Christine H Foyer. Dorsoventral variations in dark chilling effects on photosynthesis and stomatal function in Paspalum dilatatum leaves. Journal of experimental botany. 2011 Jan; 62(2):687-99. doi: 10.1093/jxb/erq302. [PMID: 21030386]
  • Csengele Barta, A Elizabete Carmo-Silva, Michael E Salvucci. Rubisco activase activity assays. Methods in molecular biology (Clifton, N.J.). 2011; 684(?):375-82. doi: 10.1007/978-1-60761-925-3_29. [PMID: 20960144]
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  • Stephen M Schrader, Kyle R Kleinbeck, Thomas D Sharkey. Rapid heating of intact leaves reveals initial effects of stromal oxidation on photosynthesis. Plant, cell & environment. 2007 Jun; 30(6):671-8. doi: 10.1111/j.1365-3040.2007.01657.x. [PMID: 17470143]
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