farnesyl diphosphate (BioDeep_00000638402)

Main id: BioDeep_00000001707

 

PANOMIX_OTCML-2023 natural product


代谢物信息卡片


2-trans,6-trans-Farnesyl diphosphate

化学式: C15H28O7P2 (382.131)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC(=CCC/C(=C/CC/C(=C/COP(=O)(O)OP(=O)(O)O)/C)/C)C
InChI: InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)/b14-9+,15-11+

描述信息

The trans,trans-stereoisomer of farnesyl diphosphate.

同义名列表

4 个代谢物同义名

2-trans,6-trans-Farnesyl diphosphate; farnesyl diphosphate; Farnesyl pyrophosphate; trans,trans-Farnesyl diphosphate



数据库引用编号

16 个数据库交叉引用编号

分类词条

54 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 14 AKT1, CASP3, CDKN1A, FDPS, FNTA, GGPS1, HMGCS1, IPP, MAPK8, MVD, MVK, PIK3CA, RAC1, RHOA
Peripheral membrane protein 1 CYP1B1
Endoplasmic reticulum membrane 5 CYP1B1, FDFT1, HMGCR, RAC1, RHOA
Nucleus 6 AKT1, CASP3, CDKN1A, MAPK8, RAC1, RHOA
cytosol 14 AKT1, CASP3, CDKN1A, FDPS, FNTA, GGPS1, HMGCS1, MAPK8, MVD, MVK, PIK3CA, PMVK, RAC1, RHOA
dendrite 1 RAC1
nuclear body 1 CDKN1A
trans-Golgi network 1 RAC1
nucleoplasm 6 AKT1, CASP3, CDKN1A, FDPS, GGPS1, MAPK8
Cell membrane 3 AKT1, RAC1, RHOA
Lipid-anchor 2 RAC1, RHOA
Cytoplasmic side 2 RAC1, RHOA
Cleavage furrow 1 RHOA
lamellipodium 4 AKT1, PIK3CA, RAC1, RHOA
ruffle membrane 2 RAC1, RHOA
Multi-pass membrane protein 2 FDFT1, HMGCR
Synapse 2 MAPK8, RAC1
cell cortex 3 AKT1, RAC1, RHOA
cell junction 1 RHOA
glutamatergic synapse 4 AKT1, CASP3, RAC1, RHOA
Golgi membrane 1 INS
neuronal cell body 1 CASP3
postsynapse 3 AKT1, RAC1, RHOA
Cytoplasm, cytosol 1 PMVK
endosome 1 RHOA
plasma membrane 5 AKT1, FNTA, PIK3CA, RAC1, RHOA
Membrane 7 AKT1, CYP1B1, FDFT1, FDPS, HMGCR, PMVK, RAC1
axon 1 MAPK8
extracellular exosome 3 PMVK, RAC1, RHOA
endoplasmic reticulum 2 FDFT1, HMGCR
extracellular space 1 INS
perinuclear region of cytoplasm 3 CDKN1A, GGPS1, PIK3CA
intercalated disc 1 PIK3CA
mitochondrion 1 CYP1B1
protein-containing complex 2 AKT1, CDKN1A
intracellular membrane-bounded organelle 2 CYP1B1, MVK
Microsome membrane 1 CYP1B1
postsynaptic density 1 CASP3
Secreted 2 INS, RAC1
extracellular region 2 INS, RAC1
cytoplasmic side of plasma membrane 1 RHOA
mitochondrial matrix 1 FDPS
actin cytoskeleton 1 IPP
dendritic spine 2 RAC1, RHOA
Z disc 1 GGPS1
cytoplasmic vesicle 1 RAC1
microtubule cytoskeleton 1 AKT1
nucleolus 1 CDKN1A
midbody 1 RHOA
cell-cell junction 1 AKT1
vesicle 2 AKT1, RHOA
Cell projection, lamellipodium 2 RAC1, RHOA
Cytoplasm, perinuclear region 1 GGPS1
focal adhesion 2 RAC1, RHOA
spindle 1 AKT1
Peroxisome 3 FDPS, MVK, PMVK
peroxisomal membrane 1 HMGCR
Mitochondrion intermembrane space 1 AKT1
mitochondrial intermembrane space 1 AKT1
ciliary basal body 1 AKT1
microtubule associated complex 1 FNTA
cell periphery 1 RHOA
cytoskeleton 2 RAC1, RHOA
cytoplasmic ribonucleoprotein granule 1 RAC1
Cytoplasm, cell cortex 1 RHOA
Recycling endosome membrane 1 RAC1
endosome lumen 1 INS
Cell projection, dendrite 2 RAC1, RHOA
Melanosome 1 RAC1
Peroxisome membrane 1 HMGCR
Cytoplasm, myofibril, sarcomere, Z line 1 GGPS1
secretory granule lumen 1 INS
secretory granule membrane 2 RAC1, RHOA
Golgi lumen 1 INS
endoplasmic reticulum lumen 1 INS
phosphatidylinositol 3-kinase complex 1 PIK3CA
phosphatidylinositol 3-kinase complex, class IA 1 PIK3CA
transport vesicle 1 INS
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
ficolin-1-rich granule membrane 2 RAC1, RHOA
basal dendrite 1 MAPK8
death-inducing signaling complex 1 CASP3
apical junction complex 1 RHOA
cyclin-dependent protein kinase holoenzyme complex 1 CDKN1A
NADPH oxidase complex 1 RAC1
PCNA-p21 complex 1 CDKN1A
phosphatidylinositol 3-kinase complex, class IB 1 PIK3CA
CAAX-protein geranylgeranyltransferase complex 2 FNTA, PGGT1B
protein farnesyltransferase complex 1 FNTA


文献列表

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