griffonin (BioDeep_00000000080)

   

PANOMIX_OTCML-2023


代谢物信息卡片


(Z)-2-((4R,5S,6S)-4,5-Dihydroxy-6-(((2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)cyclohex-2-en-1-ylidene)acetonitrile

化学式: C14H19NO8 (329.1111)
中文名称: 紫草氰苷
谱图信息: 最多检出来源 Viridiplantae(otcml) 61.57%

分子结构信息

SMILES: C1=CC(=CC#N)C(C(C1O)O)OC2C(C(C(C(O2)CO)O)O)O
InChI: InChI=1S/C14H19NO8/c15-4-3-6-1-2-7(17)9(18)13(6)23-14-12(21)11(20)10(19)8(5-16)22-14/h1-3,7-14,16-21H,5H2/b6-3-/t7-,8-,9+,10-,11+,12-,13+,14+/m1/s1

描述信息

Lithospermoside is a glycoside.
Lithospermoside is a natural product found in Tylosema fassoglense, Semiaquilegia adoxoides, and other organisms with data available.
Lithospermoside (Griffonin) is a nature product isolated from the stem bark of Semiaquilegia adoxoides [1].
Lithospermoside (Griffonin) is a nature product isolated from the stem bark of Semiaquilegia adoxoides [1].

同义名列表

8 个代谢物同义名

(Z)-2-((4R,5S,6S)-4,5-Dihydroxy-6-(((2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)cyclohex-2-en-1-ylidene)acetonitrile; (2Z)-2-[(4R,5S,6S)-4,5-dihydroxy-6-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxycyclohex-2-en-1-ylidene]acetonitrile; Acetonitrile,2-[(4R,5S,6S)-6-(b-D-glucopyranosyloxy)-4,5-dihydroxy-2-cyclohexen-1-ylidene]-,(2Z)-; griffonin, (4S-(1Z,4alpha,5alpha,6beta))-isomer; Lithospermoside; Lithosprmoside; griffonin; Lithospermoside



数据库引用编号

17 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

8 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 9 ALB, ALKBH1, ANG, GAL, GFAP, NES, PVALB, SGCB, VEGFA
Endoplasmic reticulum membrane 1 HSP90B1
Nucleus 5 ALB, ALKBH1, ANG, HSP90B1, VEGFA
cytosol 5 ALB, ANG, GFAP, HSP90B1, SST
centrosome 1 ALB
nucleoplasm 1 ALKBH1
Cell membrane 5 GAL, ITGAM, PECAM1, TNF, TRPV1
Multi-pass membrane protein 1 TRPV1
Synapse 2 PVALB, TAC1
cell junction 1 PECAM1
cell surface 3 ITGAM, TNF, VEGFA
Golgi apparatus 3 ALB, GDNF, VEGFA
growth cone 1 ANG
neuronal cell body 6 ANG, GAL, SST, TAC1, TNF, TRPV1
sarcolemma 1 SGCB
smooth endoplasmic reticulum 1 HSP90B1
plasma membrane 7 GAL, IFNLR1, ITGAM, PECAM1, SGCB, TNF, TRPV1
Membrane 5 HSP90B1, IFNLR1, ITGAM, TRPV1, VEGFA
axon 2 PVALB, TAC1
extracellular exosome 5 ALB, HSP90B1, ITGAM, PECAM1, VWF
endoplasmic reticulum 5 ALB, ALKBH1, HSP90B1, VEGFA, VWF
extracellular space 12 ALB, ANG, GAL, GDNF, ITGAM, PECAM1, SST, TAC1, TG, TNF, VEGFA, VWF
perinuclear region of cytoplasm 1 HSP90B1
adherens junction 1 VEGFA
mitochondrion 1 ALKBH1
protein-containing complex 3 ALB, HSP90B1, PECAM1
Single-pass type I membrane protein 3 IFNLR1, ITGAM, PECAM1
Secreted 8 ALB, ANG, GAL, GDNF, SST, TG, VEGFA, VWF
extracellular region 11 ALB, ANG, GAL, GDNF, HSP90B1, SST, TAC1, TG, TNF, VEGFA, VWF
astrocyte end-foot 1 GFAP
anchoring junction 1 ALB
external side of plasma membrane 4 ITGAM, PECAM1, TNF, TRPV1
Secreted, extracellular space, extracellular matrix 2 VEGFA, VWF
actin cytoskeleton 1 ANG
nucleolus 1 ANG
midbody 1 HSP90B1
cell-cell junction 1 PECAM1
recycling endosome 1 TNF
Single-pass type II membrane protein 2 SGCB, TNF
postsynaptic membrane 1 TRPV1
Cell membrane, sarcolemma 1 SGCB
Membrane raft 3 ITGAM, PECAM1, TNF
Cytoplasm, cytoskeleton 1 SGCB
focal adhesion 1 HSP90B1
GABA-ergic synapse 2 SST, TRPV1
extracellular matrix 2 VEGFA, VWF
basement membrane 1 ANG
collagen-containing extracellular matrix 2 HSP90B1, VWF
secretory granule 2 GAL, VEGFA
intermediate filament 2 GFAP, NES
Postsynaptic cell membrane 1 TRPV1
Cell projection, neuron projection 1 TRPV1
ciliary basal body 1 ALB
cell projection 1 GFAP
phagocytic cup 1 TNF
Chromosome 1 ANG
cytoskeleton 1 SGCB
centriole 1 ALB
Nucleus, nucleolus 1 ANG
spindle pole 1 ALB
blood microparticle 1 ALB
specific granule membrane 1 ITGAM
tertiary granule membrane 1 ITGAM
Melanosome 1 HSP90B1
Cytoplasm, Stress granule 1 ANG
cytoplasmic stress granule 1 ANG
euchromatin 1 ALKBH1
cell body 1 GFAP
sperm plasma membrane 1 HSP90B1
intermediate filament cytoskeleton 2 GFAP, NES
platelet alpha granule 1 VWF
plasma membrane raft 1 ITGAM
secretory granule membrane 1 PECAM1
endoplasmic reticulum lumen 2 ALB, HSP90B1
platelet alpha granule lumen 3 ALB, VEGFA, VWF
endocytic vesicle 1 ANG
neuronal dense core vesicle 1 SST
Sarcoplasmic reticulum lumen 1 HSP90B1
dystrophin-associated glycoprotein complex 1 SGCB
sarcoglycan complex 1 SGCB
[Isoform Long]: Cell membrane 1 PECAM1
platelet alpha granule membrane 1 PECAM1
integrin complex 1 ITGAM
Cell projection, dendritic spine membrane 1 TRPV1
dendritic spine membrane 1 TRPV1
cytoplasmic side of lysosomal membrane 1 GFAP
endocytic vesicle lumen 1 HSP90B1
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
angiogenin-PRI complex 1 ANG
Weibel-Palade body 1 VWF
integrin alphaM-beta2 complex 1 ITGAM
endoplasmic reticulum chaperone complex 1 HSP90B1
[N-VEGF]: Cytoplasm 1 VEGFA
[VEGFA]: Secreted 1 VEGFA
[Isoform L-VEGF189]: Endoplasmic reticulum 1 VEGFA
[Isoform VEGF121]: Secreted 1 VEGFA
[Isoform VEGF165]: Secreted 1 VEGFA
VEGF-A complex 1 VEGFA
[Isoform Delta15]: Cell junction 1 PECAM1
ciliary transition fiber 1 ALB
interleukin-28 receptor complex 1 IFNLR1
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Luiz Leonardo Saldanha, Aislan Quintiliano Delgado, Laurence Marcourt, Nathalia Aparecida de Paula Camaforte, Priscilla Maria Ponce Vareda, Samad Nejad Ebrahimi, Wagner Vilegas, Anne Lígia Dokkedal, Emerson Ferreira Queiroz, Jean-Luc Wolfender, José Roberto Bosqueiro. Hypoglycemic active principles from the leaves of Bauhinia holophylla: Comprehensive phytochemical characterization and in vivo activity profile. PloS one. 2021; 16(9):e0258016. doi: 10.1371/journal.pone.0258016. [PMID: 34559860]
  • Ofentse Mazimba, Runner R T Majinda, Ceciliah Modibedi, Ishmael B Masesane, Avrelija Cencič, Walter Chingwaru. Tylosema esculentum extractives and their bioactivity. Bioorganic & medicinal chemistry. 2011 Sep; 19(17):5225-30. doi: 10.1016/j.bmc.2011.07.006. [PMID: 21813280]
  • Q B Han, B Jiang, S X Mei, G Ding, H D Sun, J X Xie, Y Z Liu. Constituents from the roots of Semiaquilegia adoxoides. Fitoterapia. 2001 Jan; 72(1):86-8. doi: 10.1016/s0367-326x(00)00242-2. [PMID: 11163952]