isopentenyl pyrophosphate (BioDeep_00000415832)

Main id: BioDeep_00000001656

 

PANOMIX_OTCML-2023 BioNovoGene_Lab2019 natural product


代谢物信息卡片


3-methylbut-3-enyl pyrophosphate

化学式: C5H12O7P2 (246.0058)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C=C(C)CCOP(=O)(O)OP(=O)(O)O
InChI: InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)

描述信息

同义名列表

5 个代谢物同义名

isopentenyl pyrophosphate; 3-methylbut-3-enyl pyrophosphate; Isopentenyl-diphosphate; IPP; Isopentenyl diphosphate



数据库引用编号

18 个数据库交叉引用编号

分类词条

43 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 8 FDPS, FNTA, GGPS1, IL15, IPP, LAMP1, MVD, MVK
Endosome membrane 1 LAMP1
Endoplasmic reticulum membrane 5 ACAT1, CD4, FDFT1, HMGCR, HSP90B1
Nucleus 1 HSP90B1
cytosol 10 FDPS, FNTA, GGPS1, HSP90B1, IL15, LAMP1, MVD, MVK, PMVK, PRF1
nucleoplasm 3 FDPS, GGPS1, IL15
Cell membrane 4 CD4, LAMP1, PRF1, TNF
Multi-pass membrane protein 4 ACAT1, FDFT1, HMGCR, PRF1
cell surface 1 TNF
Golgi apparatus 1 IL15
lysosomal membrane 1 LAMP1
neuronal cell body 1 TNF
sarcolemma 1 LAMP1
smooth endoplasmic reticulum 1 HSP90B1
synaptic vesicle 1 LAMP1
Cytoplasm, cytosol 1 PMVK
Lysosome 1 LAMP1
endosome 1 IL15
plasma membrane 7 CD4, FNTA, IFNLR1, IL2RA, LAMP1, PRF1, TNF
Membrane 10 ACAT1, FDFT1, FDPS, HMGCR, HSP90B1, IFNLR1, IL2RA, LAMP1, PMVK, PRF1
extracellular exosome 4 ACAT1, HSP90B1, LAMP1, PMVK
Lysosome membrane 1 LAMP1
endoplasmic reticulum 4 ACAT1, FDFT1, HMGCR, HSP90B1
extracellular space 4 IL15, IL2, IL4, TNF
perinuclear region of cytoplasm 3 GGPS1, HSP90B1, LAMP1
mitochondrion 1 ACAT1
protein-containing complex 1 HSP90B1
intracellular membrane-bounded organelle 1 MVK
Single-pass type I membrane protein 4 CD4, IFNLR1, IL2RA, LAMP1
Secreted 3 IL2, IL4, PRF1
extracellular region 6 HSP90B1, IL15, IL2, IL4, PRF1, TNF
mitochondrial matrix 2 ACAT1, FDPS
external side of plasma membrane 4 CD4, IL2RA, LAMP1, TNF
multivesicular body 1 LAMP1
actin cytoskeleton 1 IPP
Z disc 1 GGPS1
midbody 1 HSP90B1
Early endosome 1 CD4
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Cytoplasm, perinuclear region 1 GGPS1
Membrane raft 2 CD4, TNF
focal adhesion 1 HSP90B1
Peroxisome 3 FDPS, MVK, PMVK
peroxisomal membrane 1 HMGCR
collagen-containing extracellular matrix 1 HSP90B1
nuclear speck 1 IL15
Late endosome 1 LAMP1
microtubule associated complex 1 FNTA
Late endosome membrane 1 LAMP1
autophagosome membrane 1 LAMP1
phagocytic cup 1 TNF
endosome lumen 1 PRF1
Melanosome 2 HSP90B1, LAMP1
sperm plasma membrane 1 HSP90B1
Peroxisome membrane 1 HMGCR
Cytoplasm, myofibril, sarcomere, Z line 1 GGPS1
endoplasmic reticulum lumen 2 CD4, HSP90B1
azurophil granule membrane 1 LAMP1
immunological synapse 1 PRF1
clathrin-coated endocytic vesicle membrane 1 CD4
Sarcoplasmic reticulum lumen 1 HSP90B1
ficolin-1-rich granule membrane 1 LAMP1
endocytic vesicle lumen 1 HSP90B1
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
interleukin-2 receptor complex 1 IL2RA
T cell receptor complex 1 CD4
Autolysosome 1 LAMP1
endoplasmic reticulum chaperone complex 1 HSP90B1
Cytolytic granule 1 PRF1
cytolytic granule lumen 1 PRF1
Cytolytic granule membrane 1 LAMP1
phagolysosome membrane 1 LAMP1
CAAX-protein geranylgeranyltransferase complex 1 FNTA
protein farnesyltransferase complex 1 FNTA
interleukin-28 receptor complex 1 IFNLR1
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Hanwen Yu, Bowen Chen, Jing Li, Nan Dong, Xiangwei Chang, Jutao Wang, Huasheng Peng, Liangping Zha, Shuangying Gui. Identification and functional characterization of two trans-isopentenyl diphosphate synthases and one squalene synthase involved in triterpenoid biosynthesis in Platycodon grandiflorus. Planta. 2023 Nov; 258(6):115. doi: 10.1007/s00425-023-04273-2. [PMID: 37943378]
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  • Meng Xia, Yifeng Zhang, Haiyun Gao, Yuan Liu, Xiaoyi Wu, Wei Gao. [Effect of isopentenyl pyrophosphate translocation on the biosynthesis of triptolide]. Sheng wu gong cheng xue bao = Chinese journal of biotechnology. 2021 Jun; 37(6):2039-2049. doi: 10.13345/j.cjb.200752. [PMID: 34227293]
  • Toni Krause, Michael Reichelt, Jonathan Gershenzon, Axel Schmidt. Analysis of the isoprenoid pathway intermediates, dimethylallyl diphosphate and isopentenyl diphosphate, from crude plant extracts by liquid chromatography tandem mass spectrometry. Phytochemical analysis : PCA. 2020 Nov; 31(6):770-777. doi: 10.1002/pca.2941. [PMID: 32337807]
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