Cytidine triphosphate (BioDeep_00000004139)

 

Secondary id: BioDeep_00000405197, BioDeep_00001868461

natural product human metabolite PANOMIX_OTCML-2023 Endogenous BioNovoGene_Lab2019


代谢物信息卡片


({[({[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid

化学式: C9H16N3O14P3 (482.9845)
中文名称: 5-三磷酸胞苷, 5'-三磷酸胞苷
谱图信息: 最多检出来源 Homo sapiens(otcml) 13.45%

分子结构信息

SMILES: C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
InChI: InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)

描述信息

Cytidine triphosphate (CTP), also known as 5-CTP, is pyrimidine nucleoside triphosphate. Formally, CTP is an ester of cytidine and triphosphoric acid. It belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. CTP, much like ATP, consists of a base (cytosine), a ribose sugar, and three phosphate groups. CTP is a high-energy molecule similar to ATP, but its role as an energy coupler is limited to a much smaller subset of metabolic reactions. CTP exists in all living species, ranging from bacteria to plants to humans and is used in the synthesis of RNA via RNA polymerase. Another enzyme known as cytidine triphosphate synthetase (CTPS) mediates the conversion of uridine triphosphate (UTP) into cytidine triphosphate (CTP) which is the rate-limiting step of de novo CTP biosynthesis. CTPS catalyzes a complex set of reactions that include the ATP-dependent transfer of the amide nitrogen from glutamine (i.e., glutaminase reaction) to the C-4 position of UTP to generate CTP. GTP stimulates the glutaminase reaction by accelerating the formation of a covalent glutaminyl enzyme intermediate. CTPS activity regulates the intracellular rates of RNA synthesis, DNA synthesis, and phospholipid synthesis. CTPS is an established target for a number of antiviral, antineoplastic, and antiparasitic drugs. CTP also acts as an inhibitor of the enzyme known as aspartate carbamoyltransferase, which is used in pyrimidine biosynthesis. CTP also reacts with nitrogen-containing alcohols to form coenzymes that participate in the formation of phospholipids. In particular, CTP is the direct precursor of the activated, phospholipid pathway intermediates CDP-diacylglycerol, CDP-choline, and CDP-ethanolamine ((PMID: 18439916). CDP-diacylglycerol is the source of the phosphatidyl moiety for phosphatidylserine, phosphatidylethanolamine, and phosphatidylcholine (synthesized by way of the CDP-diacylglycerol pathway) as well as phosphatidylglycerol, cardiolipin, and phosphatidylinositol (PMID: 18439916).
Cytidine triphosphate, also known as 5-ctp or cytidine 5-triphosphoric acid, is a member of the class of compounds known as pentose phosphates. Pentose phosphates are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. Cytidine triphosphate is soluble (in water) and an extremely strong acidic compound (based on its pKa). Cytidine triphosphate can be found in a number of food items such as lowbush blueberry, black radish, american pokeweed, and cherry tomato, which makes cytidine triphosphate a potential biomarker for the consumption of these food products. Cytidine triphosphate can be found primarily in cellular cytoplasm, as well as throughout all human tissues. Cytidine triphosphate exists in all living species, ranging from bacteria to humans. In humans, cytidine triphosphate is involved in several metabolic pathways, some of which include cardiolipin biosynthesis cl(i-14:0/i-17:0/i-16:0/i-21:0), cardiolipin biosynthesis cl(a-13:0/a-21:0/i-22:0/i-17:0), phosphatidylethanolamine biosynthesis PE(18:2(9Z,12Z)/24:0), and cardiolipin biosynthesis cl(i-13:0/a-21:0/a-15:0/i-16:0). Cytidine triphosphate is also involved in several metabolic disorders, some of which include sialuria or french type sialuria, tay-sachs disease, MNGIE (mitochondrial neurogastrointestinal encephalopathy), and g(m2)-gangliosidosis: variant B, tay-sachs disease. Cytidine triphosphate is a high-energy molecule similar to ATP, but its role as an energy coupler is limited to a much smaller subset of metabolic reactions. Cytidine triphosphate is a coenzyme in metabolic reactions like the synthesis of glycerophospholipids and glycosylation of proteins .
Cytidine 5′-triphosphate (Cytidine triphosphate; 5'-CTP) is a nucleoside triphosphate and serves as a building block for nucleotides and nucleic acids, lipid biosynthesis. Cytidine triphosphate synthase can catalyze the formation of cytidine 5′-triphosphate from uridine 5′-triphosphate (UTP). Cytidine 5′-triphosphate is an essential biomolecule?in the de novo?pyrimidine biosynthetic pathway in?T. gondii[1].

同义名列表

28 个代谢物同义名

({[({[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid; Cytidine mono(tetrahydrogen triphosphate) (ester); cytidine 5-(tetrahydrogen triphosphate); 5-(Tetrahydrogen triphosphate) cytidine; Cytidine-5-triphosphate disodium salt; Cytidine triphosphate disodium salt; CYTIDINE-5-triphosphoric acid; Cytidine 5-triphosphoric acid; Cytidine 5-prime-triphosphate; Cytidine triphosphoric acid; Cytidine triphosphate (CTP); Deoxycytosine triphosphate; Cytidine 3-triphosphate; CYTIDINE-5-triphosphATE; Cytidine 5-triphosphate; Triphosphate, cytidine; Cytidine triphosphate; Cytidine mono; Magnesium CTP; MG CTP; H4CTP; 5-CTP; CRPPP; CTP; Cytidine triphosphate; 5'-CTP; Cytidine-5'-triphosphate; CTP



数据库引用编号

30 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(2)

PlantCyc(0)

代谢反应

13994 个相关的代谢反应过程信息。

Reactome(40)

BioCyc(3)

WikiPathways(1)

Plant Reactome(522)

INOH(3)

PlantCyc(0)

COVID-19 Disease Map(1)

PathBank(13424)

PharmGKB(0)

3 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 9 CD34, CTPS1, CTPS2, EPRS1, G6PD, ITPR3, PPCS, PRKX, TRNT1
Peripheral membrane protein 3 EPRS1, G6PD, PCYT1A
Endoplasmic reticulum membrane 5 DOLK, HSP90B1, ITPR3, PCYT1A, RSAD2
Nucleus 6 HSP90B1, PCYT1A, PLCZ1, PPCS, PRKX, TRNT1
cytosol 14 AVP, CDA, CTPS1, CTPS2, DHODH, EPRS1, G6PD, GLS, HSP90B1, NGF, PCYT1A, PLCZ1, PPCS, TRNT1
dendrite 2 AVP, NGF
nucleoplasm 5 DHODH, ITPR3, PLCZ1, PRKX, TRNT1
Multi-pass membrane protein 2 DOLK, ITPR3
Synapse 1 GLS
Golgi apparatus 1 RSAD2
mitochondrial inner membrane 2 DHODH, RSAD2
neuronal cell body 1 ITPR3
smooth endoplasmic reticulum 1 HSP90B1
synaptic vesicle 1 NGF
Cytoplasm, cytosol 5 CTPS1, EPRS1, G6PD, GLS, PCYT1A
Lysosome 1 CD34
plasma membrane 4 CD34, EPRS1, IFNLR1, ITPR3
Membrane 10 CD34, CTPS1, DHODH, DOLK, EPRS1, G6PD, HSP90B1, IFNLR1, ITPR3, PCYT1A
apical plasma membrane 1 CD34
axon 1 NGF
brush border 1 ITPR3
extracellular exosome 2 G6PD, HSP90B1
endoplasmic reticulum 5 DOLK, HSP90B1, ITPR3, PCYT1A, RSAD2
extracellular space 2 AVP, NGF
perinuclear region of cytoplasm 3 CD34, HSP90B1, PLCZ1
mitochondrion 5 CTPS2, DHODH, GLS, RSAD2, TRNT1
protein-containing complex 1 HSP90B1
intracellular membrane-bounded organelle 1 G6PD
pronucleus 1 PLCZ1
Single-pass type I membrane protein 2 CD34, IFNLR1
Secreted 2 AVP, NGF
extracellular region 5 AVP, CD34, CDA, HSP90B1, NGF
cytoplasmic side of plasma membrane 1 G6PD
Single-pass membrane protein 1 DHODH
mitochondrial outer membrane 1 RSAD2
mitochondrial matrix 2 GLS, TRNT1
centriolar satellite 1 G6PD
external side of plasma membrane 1 CD34
nucleolus 2 ITPR3, PLCZ1
midbody 1 HSP90B1
apical part of cell 1 ITPR3
Cytoplasm, perinuclear region 1 PLCZ1
Mitochondrion inner membrane 1 DHODH
focal adhesion 1 HSP90B1
sarcoplasmic reticulum 1 ITPR3
collagen-containing extracellular matrix 1 HSP90B1
secretory granule 1 AVP
nuclear outer membrane 1 ITPR3
receptor complex 1 ITPR3
[Isoform 1]: Mitochondrion 1 GLS
intercellular bridge 1 CD34
fibrillar center 1 RSAD2
nuclear envelope 1 PCYT1A
endosome lumen 1 NGF
Lipid droplet 1 RSAD2
Melanosome 1 HSP90B1
sperm plasma membrane 1 HSP90B1
basal plasma membrane 1 CD34
ficolin-1-rich granule lumen 1 CDA
secretory granule lumen 1 CDA
secretory granule membrane 1 ITPR3
Golgi lumen 1 NGF
endoplasmic reticulum lumen 1 HSP90B1
tertiary granule lumen 1 CDA
neuronal dense core vesicle 1 AVP
clathrin-coated endocytic vesicle membrane 1 AVP
Sarcoplasmic reticulum lumen 1 HSP90B1
ribonucleoprotein complex 1 EPRS1
platelet dense tubular network membrane 1 ITPR3
aminoacyl-tRNA synthetase multienzyme complex 1 EPRS1
Cytoplasmic vesicle, secretory vesicle membrane 1 ITPR3
[Isoform 3]: Mitochondrion 1 GLS
GAIT complex 1 EPRS1
[Glutaminase kidney isoform, mitochondrial 68 kDa chain]: Mitochondrion matrix 1 GLS
[Glutaminase kidney isoform, mitochondrial 65 kDa chain]: Mitochondrion matrix 1 GLS
endocytic vesicle lumen 1 HSP90B1
transport vesicle membrane 1 ITPR3
sperm head 1 PLCZ1
endoplasmic reticulum chaperone complex 1 HSP90B1
cytoophidium 2 CTPS1, CTPS2
cytoplasmic side of endoplasmic reticulum membrane 1 ITPR3
glomerular endothelium fenestra 1 CD34
glycogen granule 1 PCYT1A
interleukin-28 receptor complex 1 IFNLR1


文献列表

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  • Kamran Alamdari, Karen E Fisher, David W Tano, Snigdha Rai, Kyle Palos, Andrew D L Nelson, Jesse D Woodson. Chloroplast quality control pathways are dependent on plastid DNA synthesis and nucleotides provided by cytidine triphosphate synthase two. The New phytologist. 2021 08; 231(4):1431-1448. doi: 10.1111/nph.17467. [PMID: 33993494]
  • James A Taylor, Yeonee Seol, Jagat Budhathoki, Keir C Neuman, Kiyoshi Mizuuchi. CTP and parS coordinate ParB partition complex dynamics and ParA-ATPase activation for ParABS-mediated DNA partitioning. eLife. 2021 07; 10(?):. doi: 10.7554/elife.65651. [PMID: 34286695]
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