Aminomalonic acid (BioDeep_00000004262)

 

Secondary id: BioDeep_00000415949

human metabolite PANOMIX_OTCML-2023 Endogenous


代谢物信息卡片


2-aminopropanedioic acid

化学式: C3H5NO4 (119.0219)
中文名称: 2-氨基-丙二酸
谱图信息: 最多检出来源 Homo sapiens(blood) 12.21%

分子结构信息

SMILES: C(C(=O)O)(C(=O)O)N
InChI: InChI=1S/C3H5NO4/c4-1(2(5)6)3(7)8/h1H,4H2,(H,5,6)(H,7,8)

描述信息

Aminomalonic acid (Ama) is an amino dicarboxylic acid that is an analog of malonic acid in which one of the methylene hydrogens has been replaced by an amino group. It is a strongly acidic compound that is very water soluble. Aminomalonic acid is a natural occurring, largely non-proteogenic amino acid that was first detected in alkaline hydrolysates of proteins in 1984. In particular, aminomalonic acid was isolated from proteins isolated from Escherichia coli cultures and from human atherosclerotic plaques (PMID: 6366787). Aminomalonic acid is a relatively unstable, minor amino acid in complex structures such as bacteria or tissues. The presence of aminomalonic acid has important biological implications because the malonic acid moiety potentially imparts calcium binding properties to proteins. Possible origins of aminomalonic acid in proteins include its introduction via errors in protein synthesis and oxidative damage to amino acid residues in proteins. (PMID: 1621954 , 6366787 ). Aminomalonic acid can be generated naturally via the activity of mammalian and bacterial enzymes on various precursors such as 2-aminomalonamide, diethylaminomalonate and ketomalonic acid (PMID: 35346). Free aminomalonic acid appears to be an oxidation product arising from perturbed serine or threonine metabolism. Aminomalonic acid is produced in animals that have been exposed to Cadmium (a strong pro-oxidant) for extended periods of time and it has been proposed to be a potential biomarker of Cadmium toxicity (PMID: 32193438). Aminomalonic acid has also been found to be elevated in the urine of individuals with anxiety and major depressive disorders (PMID: 30232320). Aminomalonic acid has been reported to be a potential biomarker for hepatocellular carcinoma (PMID: 18767022) and it exhibits strong inhibitory effects on L-asparagine synthase (PMID: 35346). Several metabolomics studies have also found that altered aminomalonic acid levels in serum are associated with neuropsychiatric disorders, melanoma, ketamine overdose and aortic aneurysm, indicating that aminomalonic acid is an important serum indicator for diseases and toxicities (PMID: 32193438).
Aminomalonic acid (Ama) was first detected in alkaline hydrolysates of proteins in 1984. Ama has been isolated from proteins of Escherichia coli and human atherosclerotic plaque. The presence of Ama has important biological implications because the malonic acid moiety potentially imparts calcium binding properties to protein. Ama is not formed from any of the 20 major amino acids during the hydrolysis procedure. Furthermore, the amount of Ama found does not depend on the presence of small amounts of O2 during the hydrolysis. No artifactual formation of ama has been demonstrated and may indeed be a constituent of proteins before the hydrolysis procedure. Possible origins of Ama include errors in protein synthesis and oxidative damage to amino acid residues in proteins. (PMID: 1621954, 6366787) [HMDB]
Aminomalonic acid is an amino endogenous metabolite, acts as a strong inhibitor of L-asparagine synthetase from Leukemia 5178Y/AR (Ki= 0.0023 M) and mouse pancreas (Ki= 0.0015 M) in vitro. Aminomalonic acid is a potential biomarker to discriminate between different stages of melanoma metastasis[1][2][3].

同义名列表

13 个代谢物同义名

2-aminopropanedioic acid; amino-Propanedioic acid; alpha-Aminomalonic acid; Aminopropanedioic acid; amino-Propanedioate; 2-Aminomalonic acid; a-Aminomalonic acid; amino-Malonic acid; Aminopropanedioate; Aminomalonic acid; 2-Aminomalonate; Aminomalonate; Aminomalonate



数据库引用编号

19 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

2 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 3 ARG1, DDO, HMGB1
Peripheral membrane protein 1 HMGB1
Endoplasmic reticulum membrane 1 HMOX1
Nucleus 4 ARG1, GABPA, HMGB1, HMOX1
cytosol 4 ARG1, ASNS, DDO, HMOX1
dendrite 1 UCN
nucleoplasm 3 GABPA, HMGB1, HMOX1
Cell membrane 4 CXCL16, GLRA2, HMGB1, TNF
Cytoplasmic side 1 HMOX1
Cytoplasmic granule 1 ARG1
Multi-pass membrane protein 3 ATP4A, GLRA2, UCP1
Synapse 1 GLRA2
cell surface 2 HMGB1, TNF
Golgi membrane 1 INS
mitochondrial inner membrane 1 UCP1
neuronal cell body 1 TNF
Cytoplasm, cytosol 1 DDO
endosome 1 HMGB1
plasma membrane 7 ATP4A, BCHE, CSF2, CXCL16, GLRA2, HMGB1, TNF
Membrane 5 ATP4A, CLYBL, CXCL16, GLRA2, HMOX1
apical plasma membrane 1 ATP4A
extracellular exosome 1 MMP9
endoplasmic reticulum 2 HMGB1, HMOX1
extracellular space 13 ARG1, ATP4A, BCHE, CRP, CSF2, CXCL16, CXCL8, HMGB1, HMOX1, IL10, INS, MMP9, TNF
perinuclear region of cytoplasm 1 HMOX1
mitochondrion 2 CLYBL, UCP1
intracellular membrane-bounded organelle 2 CSF2, GLRA2
Single-pass type I membrane protein 1 CXCL16
Secreted 7 BCHE, CRP, CSF2, CXCL8, HMGB1, IL10, INS
extracellular region 12 ARG1, BCHE, CRP, CSF2, CXCL16, CXCL8, HMGB1, IL10, INS, MMP9, TNF, UCN
mitochondrial outer membrane 1 HMOX1
Extracellular side 1 HMGB1
external side of plasma membrane 1 TNF
varicosity 1 UCN
Secreted, extracellular space, extracellular matrix 1 MMP9
perikaryon 1 UCN
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Apical cell membrane 1 ATP4A
Mitochondrion inner membrane 1 UCP1
Membrane raft 1 TNF
GABA-ergic synapse 1 GLRA2
Peroxisome 1 DDO
Peroxisome matrix 1 DDO
peroxisomal matrix 1 DDO
collagen-containing extracellular matrix 1 MMP9
Postsynaptic cell membrane 1 GLRA2
neuron projection 1 GLRA2
chromatin 1 GABPA
cell projection 1 GLRA2
phagocytic cup 1 TNF
Chromosome 1 HMGB1
blood microparticle 1 BCHE
transmembrane transporter complex 1 GLRA2
endosome lumen 1 INS
chloride channel complex 1 GLRA2
ficolin-1-rich granule lumen 2 HMGB1, MMP9
secretory granule lumen 2 HMGB1, INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 2 BCHE, INS
transcription repressor complex 1 HMGB1
axon terminus 1 UCN
specific granule lumen 1 ARG1
tertiary granule lumen 1 MMP9
transport vesicle 1 INS
azurophil granule lumen 1 ARG1
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
Single-pass type IV membrane protein 1 HMOX1
nuclear envelope lumen 1 BCHE
endoplasmic reticulum-Golgi intermediate compartment 1 HMGB1
postsynaptic specialization membrane 1 GLRA2
condensed chromosome 1 HMGB1
granulocyte macrophage colony-stimulating factor receptor complex 1 CSF2
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
alphav-beta3 integrin-HMGB1 complex 1 HMGB1
glycinergic synapse 1 GLRA2
potassium:proton exchanging ATPase complex 1 ATP4A
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
[Isoform DDO-1]: Peroxisome matrix 1 DDO
[Isoform 3]: Peroxisome matrix 1 DDO


文献列表

  • Ming-Yuan Xu, Pan Wang, Ying-Jian Sun, Lin Yang, Yi-Jun Wu. Identification of metabolite biomarkers in serum of rats exposed to chlorpyrifos and cadmium. Scientific reports. 2020 03; 10(1):4999. doi: 10.1038/s41598-020-61982-4. [PMID: 32193438]
  • Jian-Jun Chen, Shun-Jie Bai, Wen-Wen Li, Chan-Juan Zhou, Peng Zheng, Liang Fang, Hai-Yang Wang, Yi-Yun Liu, Peng Xie. Urinary biomarker panel for diagnosing patients with depression and anxiety disorders. Translational psychiatry. 2018 09; 8(1):192. doi: 10.1038/s41398-018-0245-0. [PMID: 30232320]
  • Dorottya Nagy-Szakal, Dinesh K Barupal, Bohyun Lee, Xiaoyu Che, Brent L Williams, Ellie J R Kahn, Joy E Ukaigwe, Lucinda Bateman, Nancy G Klimas, Anthony L Komaroff, Susan Levine, Jose G Montoya, Daniel L Peterson, Bruce Levin, Mady Hornig, Oliver Fiehn, W Ian Lipkin. Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Scientific reports. 2018 07; 8(1):10056. doi: 10.1038/s41598-018-28477-9. [PMID: 29968805]
  • Mahim I Qureshi, Michele Greco, Panagiotis A Vorkas, Elaine Holmes, Alun H Davies. Application of Metabolic Profiling to Abdominal Aortic Aneurysm Research. Journal of proteome research. 2017 07; 16(7):2325-2332. doi: 10.1021/acs.jproteome.6b00894. [PMID: 28287739]
  • Gyu Song, Eleonora Napoli, Sarah Wong, Randi Hagerman, Siming Liu, Flora Tassone, Cecilia Giulivi. Altered redox mitochondrial biology in the neurodegenerative disorder fragile X-tremor/ataxia syndrome: use of antioxidants in precision medicine. Molecular medicine (Cambridge, Mass.). 2016 Oct; 22(?):548-559. doi: 10.2119/molmed.2016.00122. [PMID: 27385396]
  • Francisco J Rupérez, Priscila Ramos-Mozo, Joanna Teul, Roxana Martinez-Pinna, Antonia Garcia, Myriam Malet-Martino, Emilio Camafeita, Juan Antonio Lopez, Carlos Pastor-Vargas, Jesús Egido, Stéphane Balayssac, Véronique Gilard, Coral Barbas, Jose Luis Martin-Ventura. Metabolomic study of plasma of patients with abdominal aortic aneurysm. Analytical and bioanalytical chemistry. 2012 Jun; 403(6):1651-60. doi: 10.1007/s00216-012-5982-y. [PMID: 22543712]
  • Jiayu Tu, Jiye A, Guangji Wang, Hongmei Wen, Aiyun Wang, Liuqing Di, Bei Cao, Linsheng Liu. [Plasma metabonomics study of ischemic cerebral apoplexy rats treated with Tongsaimai pellets]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica. 2012 Apr; 37(7):1028-33. doi: . [PMID: 22792811]
  • Jing Wang, Zimin Yuan, Hongwei Kong, Yong Li, Xin Lu, Guowang Xu. [Exploring the mechanism of rhizoma coptidis in treating type II diabetes mellitus based on metabolomics by gas chromatography-mass spectrometry]. Se pu = Chinese journal of chromatography. 2012 Jan; 30(1):8-13. doi: 10.3724/sp.j.1123.2011.08039. [PMID: 22667084]
  • Joanna Teul, Antonia Garcia, José Tuñón, Jose Luis Martin-Ventura, Nieves Tarín, Lorenzo López Bescós, Jesús Egido, Coral Barbas, Francisco J Rupérez. Targeted and non-targeted metabolic time trajectory in plasma of patients after acute coronary syndrome. Journal of pharmaceutical and biomedical analysis. 2011 Sep; 56(2):343-51. doi: 10.1016/j.jpba.2011.05.020. [PMID: 21696905]
  • Matej Orešič, Jing Tang, Tuulikki Seppänen-Laakso, Ismo Mattila, Suoma E Saarni, Samuli I Saarni, Jouko Lönnqvist, Marko Sysi-Aho, Tuulia Hyötyläinen, Jonna Perälä, Jaana Suvisaari. Metabolome in schizophrenia and other psychotic disorders: a general population-based study. Genome medicine. 2011 Mar; 3(3):19. doi: 10.1186/gm233. [PMID: 21429189]
  • Nikolaos Psychogios, David D Hau, Jun Peng, An Chi Guo, Rupasri Mandal, Souhaila Bouatra, Igor Sinelnikov, Ramanarayan Krishnamurthy, Roman Eisner, Bijaya Gautam, Nelson Young, Jianguo Xia, Craig Knox, Edison Dong, Paul Huang, Zsuzsanna Hollander, Theresa L Pedersen, Steven R Smith, Fiona Bamforth, Russ Greiner, Bruce McManus, John W Newman, Theodore Goodfriend, David S Wishart. The human serum metabolome. PloS one. 2011 Feb; 6(2):e16957. doi: 10.1371/journal.pone.0016957. [PMID: 21359215]
  • Ruyi Xue, Zhenxin Lin, Chunhui Deng, Ling Dong, Taotao Liu, Jiyao Wang, Xizhong Shen. A serum metabolomic investigation on hepatocellular carcinoma patients by chemical derivatization followed by gas chromatography/mass spectrometry. Rapid communications in mass spectrometry : RCM. 2008 Oct; 22(19):3061-8. doi: 10.1002/rcm.3708. [PMID: 18767022]
  • You-Ying Mao, Jing-Qing Bai, Jiang-Hua Chen, Zhang-Fei Shou, Qiang He, Jian-Yong Wu, Ying Chen, Yi-Yu Cheng. A pilot study of GC/MS-based serum metabolic profiling of acute rejection in renal transplantation. Transplant immunology. 2008 Apr; 19(1):74-80. doi: 10.1016/j.trim.2008.01.006. [PMID: 18346641]
  • H A Milman, R Muth, D A Cooney. Aminomalonic acid and its congeners as potential in vivo inhibitors of L-asparagine synthetase. Enzyme. 1979; 24(1):36-47. doi: 10.1159/000458626. [PMID: 35346]