Gibberellin A53 (BioDeep_00000003526)

 

Secondary id: BioDeep_00000638615

human metabolite PANOMIX_OTCML-2023 Endogenous Plant Hormones natural product


代谢物信息卡片


(1S,2S,3S,4R,8S,9S,12S)-12-hydroxy-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0^{1,9}.0^{3,8}]pentadecane-2,4-dicarboxylic acid

化学式: C20H28O5 (348.1937)
中文名称: 赤霉素A53
谱图信息: 最多检出来源 Viridiplantae(plant) 15.67%

分子结构信息

SMILES: C=C1CC23CC1(O)CCC2C1(C)CCCC(C)(C(=O)O)C1C3C(=O)O
InChI: InChI=1S/C20H28O5/c1-11-9-19-10-20(11,25)8-5-12(19)17(2)6-4-7-18(3,16(23)24)14(17)13(19)15(21)22/h12-14,25H,1,4-10H2,2-3H3,(H,21,22)(H,23,24)/t12-,13+,14-,17-,18+,19-,20-/m0/s1

描述信息

Gibberellin A53 (GA53) belongs to the class of organic compounds known as C20-gibberellin 6-carboxylic acids. These are C20-gibberellins with a carboxyl group at the 6-position. Thus, gibberellin A53 is considered to be an isoprenoid lipid molecule. Gibberellin A53 is found in apple. Gibberellin A53 is isolated from Vicia faba and spinach (Spinacia oleracea).
Isolated from Vicia faba and spinach (Spinacia oleracea). Gibberellin A53 is found in many foods, some of which are sapodilla, cowpea, sorghum, and garden tomato.

同义名列表

14 个代谢物同义名

(1S,2S,3S,4R,8S,9S,12S)-12-hydroxy-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.0^{1,9}.0^{3,8}]pentadecane-2,4-dicarboxylic acid; (1alpha,4Aalpha,4bbeta,10beta)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylic acid; (1alpha,4Aalpha,4bbeta,10beta)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylate; (1a,4Aalpha,4bbeta,10b)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylic acid; (1Α,4aalpha,4bbeta,10β)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylic acid; (1a,4Aalpha,4bbeta,10b)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylate; (1Α,4aalpha,4bbeta,10β)-7-hydroxy-1,4a-dimethyl-8-methylenegibbane-1,10-dicarboxylate; 13-Hydroxygibberellin A12; Gibberellin GA53; Gibberellin A53; 13-Hydroxy GA12; Gibberellin 53; GA53; Gibberellin A53



数据库引用编号

23 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(2)

代谢反应

330 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(226)

INOH(0)

PlantCyc(103)

COVID-19 Disease Map(0)

PathBank(1)

PharmGKB(0)

116 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 5 ABI3, CAT, EIF3M, PFDN6, PGP
Peripheral membrane protein 1 HSD17B6
Nucleus 1 DLD
cytosol 4 ARF4, CAT, EIF3M, GDA
Lipid-anchor 1 ARF4
lamellipodium 1 ABI3
ruffle membrane 1 ARF4
Early endosome membrane 1 HSD17B6
Multi-pass membrane protein 1 GDA
dendritic shaft 1 ABI3
glutamatergic synapse 2 ABI3, ARF4
Golgi apparatus 1 ARF4
Golgi membrane 1 ARF4
mitochondrial inner membrane 1 GDA
acrosomal vesicle 1 DLD
plasma membrane 1 ARF4
Membrane 3 ABI3, ARF4, CAT
extracellular exosome 2 ARF4, CAT
Lumenal side 1 HSD17B6
endoplasmic reticulum 1 HSD17B6
mitochondrion 3 CAT, DLD, GDA
protein-containing complex 2 CAT, EIF3M
intracellular membrane-bounded organelle 2 CAT, HSD17B6
Microsome membrane 1 HSD17B6
postsynaptic density 1 ABI3
extracellular region 1 CAT
Mitochondrion matrix 1 DLD
mitochondrial matrix 2 CAT, DLD
motile cilium 1 DLD
dendritic spine 2 ABI3, ARF4
nucleolus 1 PNMA3
Mitochondrion inner membrane 1 GDA
focal adhesion 1 CAT
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
Nucleus, nucleolus 1 PNMA3
Cytoplasmic vesicle, secretory vesicle, acrosome 1 DLD
Cell projection, cilium, flagellum 1 DLD
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 1 CAT
eukaryotic 43S preinitiation complex 1 EIF3M
eukaryotic 48S preinitiation complex 1 EIF3M
eukaryotic translation initiation factor 3 complex 1 EIF3M
eukaryotic translation initiation factor 3 complex, eIF3m 1 EIF3M
pyruvate dehydrogenase complex 1 DLD
oxoglutarate dehydrogenase complex 1 DLD
prefoldin complex 1 PFDN6
protein folding chaperone complex 1 PFDN6
RPAP3/R2TP/prefoldin-like complex 1 PFDN6
catalase complex 1 CAT
acetyltransferase complex 1 DLD
acrosomal matrix 1 DLD
branched-chain alpha-ketoacid dehydrogenase complex 1 DLD
oxoadipate dehydrogenase complex 1 DLD
SCAR complex 1 ABI3
actin-based cell projection 1 ABI3


文献列表