Otonecine (BioDeep_00000008043)

   

natural product


代谢物信息卡片


1H-Pyrrolizinium, 2,3,5,7a-tetrahydro-1,7a-dihydroxy-7-(hydroxymethyl)-4-methyl-, (1R-(1alpha,4beta,7abeta))-

化学式: C9H15NO3 (185.1052)
中文名称:
谱图信息: 最多检出来源 Mentha canadensis(plant) 100%

分子结构信息

SMILES: CN1C/C=C(/CO)C(=O)[C@H](O)CC1
InChI: InChI=1S/C9H15NO3/c1-10-4-2-7(6-11)9(13)8(12)3-5-10/h2,8,11-12H,3-6H2,1H3/b7-2-/t8-/m1/s1

描述信息

同义名列表

4 个代谢物同义名

Otonecine; 1H-Pyrrolizinium, 2,3,5,7a-tetrahydro-1,7a-dihydroxy-7-(hydroxymethyl)-4-methyl-, (1R-(1alpha,4beta,7abeta))-; MS000021580; Otonecine



数据库引用编号

14 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

9 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 8 AIMP2, CASP3, CASP8, CASP9, CYP3A4, HPGDS, RARA, TFDP3
Endoplasmic reticulum membrane 2 CYP3A4, CYP3A5
Nucleus 8 AIMP2, CASP3, CASP8, CASP9, NR1I2, PARP1, RARA, TFDP3
autophagosome 1 MAP1LC3A
cytosol 10 AIMP2, CASP3, CASP8, CASP9, HPGDS, MAP1LC3A, NGF, NGFR, PARP1, RARA
dendrite 2 NGF, RARA
nuclear body 2 NR1I2, PARP1
nucleoplasm 7 CASP3, CASP8, HPGDS, NGFR, NR1I2, PARP1, RARA
RNA polymerase II transcription regulator complex 1 RARA
Cell membrane 1 NGFR
Lipid-anchor 1 MAP1LC3A
lamellipodium 1 CASP8
Cell projection, growth cone 1 NGFR
cell surface 1 NGFR
glutamatergic synapse 2 CASP3, MAP1LC3A
growth cone 1 NGFR
lysosomal membrane 1 EGF
neuromuscular junction 1 NGFR
neuronal cell body 1 CASP3
synaptic vesicle 1 NGF
Cytoplasm, cytosol 2 AIMP2, PARP1
Presynapse 1 NGFR
endosome 1 NGFR
plasma membrane 3 EGF, NGFR, RARA
Membrane 6 AIMP2, CYP3A4, CYP3A5, EGF, NGFR, PARP1
axon 1 NGF
extracellular exosome 1 EGF
extracellular space 3 EGF, IGF1, NGF
perinuclear region of cytoplasm 1 RARA
mitochondrion 3 CASP8, CASP9, PARP1
protein-containing complex 4 CASP8, CASP9, PARP1, RARA
intracellular membrane-bounded organelle 4 CYP3A4, CYP3A5, HPGDS, MAP1LC3A
Microsome membrane 2 CYP3A4, CYP3A5
postsynaptic density 2 CASP3, NGFR
Single-pass type I membrane protein 1 NGFR
Secreted 2 IGF1, NGF
extracellular region 4 EGF, IGF1, NGF, NGFR
mitochondrial outer membrane 1 CASP8
transcription regulator complex 4 NR1I2, PARP1, RARA, TFDP3
actin cytoskeleton 1 RARA
dendritic spine 1 NGFR
perikaryon 1 NGFR
nucleolus 2 PARP1, RARA
cell-cell junction 1 NGFR
Cell projection, lamellipodium 1 CASP8
Cytoplasm, cytoskeleton 1 MAP1LC3A
microtubule 1 MAP1LC3A
Cell projection, dendritic spine 1 NGFR
Late endosome 1 MAP1LC3A
chromatin 4 NR1I2, PARP1, RARA, TFDP3
Cytoplasmic vesicle, autophagosome membrane 1 MAP1LC3A
autophagosome membrane 1 MAP1LC3A
Chromosome 1 PARP1
cytoskeleton 1 CASP8
Nucleus, nucleolus 1 PARP1
nuclear replication fork 1 PARP1
chromosome, telomeric region 1 PARP1
organelle membrane 1 MAP1LC3A
site of double-strand break 1 PARP1
nuclear envelope 1 PARP1
Endomembrane system 1 MAP1LC3A
endosome lumen 1 NGF
cell body 1 CASP8
intermediate filament cytoskeleton 1 NR1I2
exocytic vesicle 1 IGF1
Golgi lumen 1 NGF
platelet alpha granule lumen 2 EGF, IGF1
apoptosome 1 CASP9
clathrin-coated endocytic vesicle membrane 1 EGF
protein-DNA complex 1 PARP1
CD95 death-inducing signaling complex 1 CASP8
death-inducing signaling complex 2 CASP3, CASP8
ripoptosome 1 CASP8
aminoacyl-tRNA synthetase multienzyme complex 1 AIMP2
site of DNA damage 1 PARP1
Autolysosome 1 MAP1LC3A
alphav-beta3 integrin-IGF-1-IGF1R complex 1 IGF1
insulin-like growth factor binding protein complex 1 IGF1
insulin-like growth factor ternary complex 1 IGF1
[Poly [ADP-ribose] polymerase 1, processed N-terminus]: Chromosome 1 PARP1
[Poly [ADP-ribose] polymerase 1, processed C-terminus]: Cytoplasm 1 PARP1
caspase complex 1 CASP9


文献列表

  • Fen Xiong, Kaiyuan Jiang, Yan Chen, Zhengcai Ju, Li Yang, Aizhen Xiong, Zhengtao Wang. Protein cross-linking in primary cultured mouse hepatocytes by dehydropyrrolizidine alkaloids: Structure-toxicity relationship. Toxicon : official journal of the International Society on Toxinology. 2020 Oct; 186(?):4-11. doi: 10.1016/j.toxicon.2020.07.015. [PMID: 32687888]
  • Mariko Kitajima, Kei Okabe, Megumi Yoshida, Ryo Nakabayashi, Kazuki Saito, Noriyuki Kogure, Hiromitsu Takayama. New otonecine-type pyrrolizidine alkaloid from Petasites japonicus. Journal of natural medicines. 2019 Jun; 73(3):602-607. doi: 10.1007/s11418-019-01285-9. [PMID: 30784002]
  • Verena Schöning, Felix Hammann, Mark Peinl, Jürgen Drewe. Editor's Highlight: Identification of Any Structure-Specific Hepatotoxic Potential of Different Pyrrolizidine Alkaloids Using Random Forests and Artificial Neural Networks. Toxicological sciences : an official journal of the Society of Toxicology. 2017 Dec; 160(2):361-370. doi: 10.1093/toxsci/kfx187. [PMID: 28973379]
  • She-ban Pu, De-ran Xu, Mian Zhang, Hong-hua Zhou, Zheng-tao Wang, Guo-dian Yu. [Detection of hepatotoxic pyrrolizidine alkaloids in Ligularia Cass. with LC/MSn]. Yao xue xue bao = Acta pharmaceutica Sinica. 2004 Oct; 39(10):831-5. doi: ". [PMID: 15700826]
  • Qingsu Xia, Ming W Chou, Ge Lin, Peter P Fu. Metabolic formation of DHP-derived DNA adducts from a representative otonecine type pyrrolizidine alkaloid clivorine and the extract of Ligularia hodgsonnii hook. Chemical research in toxicology. 2004 May; 17(5):702-8. doi: 10.1021/tx030030q. [PMID: 15144228]
  • G Lin, P Rose, K B Chatson, E M Hawes, X G Zhao, Z T Wang. Characterization of two structural forms of otonecine-type pyrrolizidine alkaloids from Ligularia hodgsonii by NMR spectroscopy. Journal of natural products. 2000 Jun; 63(6):857-60. doi: 10.1021/np9906119. [PMID: 10869221]