Isovaleryl-CoA (BioDeep_00000005043)
Main id: BioDeep_00000630309
human metabolite PANOMIX_OTCML-2023 Endogenous natural product
代谢物信息卡片
化学式: C26H44N7O17P3S (851.1727)
中文名称:
谱图信息:
最多检出来源 () 0%
分子结构信息
SMILES: CC(C)CC(=O)SCCN=C(O)CCN=C(O)[C@H](O)C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@@H](n2cnc3c(N)ncnc32)[C@H](O)[C@@H]1OP(=O)(O)O
InChI: InChI=1S/C26H44N7O17P3S/c1-14(2)9-17(35)54-8-7-28-16(34)5-6-29-24(38)21(37)26(3,4)11-47-53(44,45)50-52(42,43)46-10-15-20(49-51(39,40)41)19(36)25(48-15)33-13-32-18-22(27)30-12-31-23(18)33/h12-15,19-21,25,36-37H,5-11H2,1-4H3,(H,28,34)(H,29,38)(H,42,43)(H,44,45)(H2,27,30,31)(H2,39,40,41)/t15-,19-,20-,21+,25-/m1/s1
描述信息
Isovaleryl-CoA is an intermediate metabolite in the catabolic pathway of leucine. The accumulation of derivatives of isovaleryl-CoA occurs in patients affected with isovaleric acidemia (IVA, OMIM 243500) an autosomal recessive inborn error of leucine metabolism caused by a deficiency of the mitochondrial enzyme isovaleryl-CoA dehydrogenase (IVD, EC 1.3.99.10, a flavoenzyme that catalyzes the conversion of isovaleryl-CoA to 3-methylcrotonyl-CoA). IVA was the first organic acidemia recognized in humans and can cause significant morbidity and mortality. Early diagnosis and treatment with a protein restricted diet and supplementation with carnitine and glycine are effective in promoting normal development in severely affected individuals. Both intra- and interfamilial variability have been recognized. Initially, two phenotypes with either an acute neonatal or a chronic intermittent presentation were described. More recently, a third group of individuals with mild biochemical abnormalities who can be asymptomatic have been identified through newborn screening of blood spots by tandem mass spectrometry. The majority of patients with IVA today are diagnosed pre-symptomatically through newborn screening by use of MS/MS which reveals elevations of the marker metabolite C5 acylcarnitine in dried blood spots. C5 acylcarnitine represents a mixture of isomers (isovalerylcarnitine, 2-methylbutyrylcarnitine, and pivaloylcarnitine). (PMID: 16602101, Am J Med Genet C Semin Med Genet. 2006 May 15;142(2):95-103.) [HMDB]. Isovaleryl-CoA is found in many foods, some of which are purple laver, alaska wild rhubarb, macadamia nut (m. tetraphylla), and green zucchini.
Isovaleryl-CoA is an intermediate metabolite in the catabolic pathway of leucine. The accumulation of derivatives of isovaleryl-CoA occurs in patients affected with isovaleric acidemia (IVA, OMIM: 243500), an autosomal recessive inborn error of leucine metabolism caused by a deficiency of the mitochondrial enzyme isovaleryl-CoA dehydrogenase (IVD, EC 1.3.99.10), a flavoenzyme that catalyzes the conversion of isovaleryl-CoA into 3-methylcrotonyl-CoA. IVA was the first organic acidemia recognized in humans and can cause significant morbidity and mortality. Early diagnosis and treatment with a protein-restricted diet and supplementation with carnitine and glycine are effective in promoting normal development in severely affected individuals. Both intra- and interfamilial variability have been recognized. Initially, two phenotypes with either an acute neonatal or a chronic intermittent presentation were described. More recently, a third group of individuals with mild biochemical abnormalities who can be asymptomatic have been identified through newborn screening of blood spots by tandem mass spectrometry. The majority of patients with IVA today are diagnosed pre-symptomatically through newborn screening by use of MS/MS which reveals elevations of the marker metabolite C5 acylcarnitine in dried blood spots. C5 Acylcarnitine represents a mixture of isomers (isovalerylcarnitine, 2-methylbutyrylcarnitine, and pivaloylcarnitine) (PMID: 16602101).
同义名列表
30 个代谢物同义名
(2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-[2-({2-[(3-methylbutanoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanimidic acid; (2R)-4-[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]-2-hydroxy-3,3-dimethyl-N-[2-({2-[(3-methylbutanoyl)sulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]butanimidic acid; S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-methylbutanethioate; S-(3-Methylbutanoate) coenzyme A; beta-Methylbutanoyl-coenzyme A; beta-Methylbutyryl-coenzyme A; Β-methylbutanoyl-coenzyme A; b-Methylbutanoyl-coenzyme A; 3-Methylbutanoyl-coenzyme A; b-Methylbutyryl-coenzyme A; 3-Methylbutyryl-coenzyme A; Β-methylbutyryl-coenzyme A; S-(3-Methylbutanoic acid; S-isovalerate Coenzyme A; beta-Methylbutanoyl-CoA; beta-Methylbutyryl-CoA; Isovaleryl-coenzyme A; Isovaleryl coenzyme A; b-Methylbutanoyl-CoA; 3-Methylbutanoyl-CoA; Β-methylbutanoyl-CoA; S-(3-Methylbutanoate; Coenzyme A, valeryl-; b-Methylbutyryl-CoA; Β-methylbutyryl-CoA; 3-Methylbutyryl-CoA; S-isovalerate CoA; Isovaleryl CoA; Isovaleryl-CoA; 3-Methylbutanoyl-CoA
数据库引用编号
20 个数据库交叉引用编号
- ChEBI: CHEBI:15487
- KEGG: C02939
- PubChem: 165435
- PubChem: 810
- HMDB: HMDB0001113
- Metlin: METLIN451
- Wikipedia: Isovaleryl-CoA
- MetaCyc: ISOVALERYL-COA
- foodb: FDB022430
- chemspider: 145017
- CAS: 6244-91-3
- PMhub: MS000017724
- PubChem: 5858
- LipidMAPS: LMFA07050336
- PDB-CCD: IVC
- 3DMET: B04869
- NIKKAJI: J675.058C
- RefMet: Isovaleryl-CoA
- KNApSAcK: 15487
- LOTUS: LTS0163326
分类词条
相关代谢途径
Reactome(0)
PlantCyc(0)
代谢反应
14 个相关的代谢反应过程信息。
Reactome(9)
- Metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Amino acid and derivative metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Branched-chain amino acid catabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Amino acid and derivative metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Branched-chain amino acid catabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Metabolism:
1-3-oxo-THA-CoA + CoA-SH ⟶ DHA-CoA + propionyl CoA
- Amino acid and derivative metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Branched-chain amino acid catabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
BioCyc(3)
- leucine degradation I:
2-oxoglutarate + leu ⟶ 4-methyl-2-oxopentanoate + glt
- superpathway of sterol biosynthesis:
4-methyl-2-oxopentanoate + NAD+ + coenzyme A ⟶ CO2 + NADH + isovaleryl-CoA
- leucine degradation I:
4-methyl-2-oxopentanoate + NAD+ + coenzyme A ⟶ CO2 + NADH + isovaleryl-CoA
WikiPathways(0)
Plant Reactome(0)
INOH(2)
- Valine,Leucine and Isoleucine degradation ( Valine,Leucine and Isoleucine degradation ):
2-Methyl-3-acetoacetyl-CoA + CoA ⟶ Acetyl-CoA + Propanoyl-CoA
- 3-Methyl-butanoyl-CoA + Acceptor = 3-Methylbut-2-enoyl-CoA + Reduced acceptor ( Valine,Leucine and Isoleucine degradation ):
3-Methyl-butanoyl-CoA + Acceptor ⟶ 3-Methylbut-2-enoyl-CoA + Reduced acceptor
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
9 个相关的物种来源信息
- 2 - Bacteria: LTS0163326
- 9606 - Homo sapiens: -
- 9606 - Homo sapiens: 10.1007/S11306-016-1051-4
- 1883 - Streptomyces: LTS0163326
- 1886 - Streptomyces albidoflavus: 10.1016/J.JBIOTEC.2019.10.020
- 1886 - Streptomyces albidoflavus: LTS0163326
- 1902 - Streptomyces coelicolor: 10.1016/J.JBIOTEC.2019.10.020
- 1902 - Streptomyces coelicolor: LTS0163326
- 2062 - Streptomycetaceae: LTS0163326
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:
- PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。
文献列表
- Christopher B Eiben, Tian Tian, Mitchell G Thompson, Daniel Mendez-Perez, Nurgul Kaplan, Garima Goyal, Jennifer Chiniquy, Nathan J Hillson, Taek Soon Lee, Jay D Keasling. Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol.
ACS synthetic biology.
2020 03; 9(3):468-474. doi:
10.1021/acssynbio.9b00402
. [PMID: 32149502] - Randy W Purves, Stephen J Ambrose, Shawn M Clark, Jake M Stout, Jonathan E Page. Separation of isomeric short-chain acyl-CoAs in plant matrices using ultra-performance liquid chromatography coupled with tandem mass spectrometry.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
2015 Feb; 980(?):1-7. doi:
10.1016/j.jchromb.2014.12.007
. [PMID: 25553535] - Geng Ding, Ping Che, Hilal Ilarslan, Eve S Wurtele, Basil J Nikolau. Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination.
The Plant journal : for cell and molecular biology.
2012 May; 70(4):562-77. doi:
10.1111/j.1365-313x.2011.04893.x
. [PMID: 22211474] - Kimitsune Ishizaki, Tony R Larson, Nicolas Schauer, Alisdair R Fernie, Ian A Graham, Christopher J Leaver. The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation.
The Plant cell.
2005 Sep; 17(9):2587-600. doi:
10.1105/tpc.105.035162
. [PMID: 16055629] - S E Faivre-Nitschke, I Couée, M Vermel, J M Grienenberger, J M Gualberto. Purification, characterization and cloning of isovaleryl-CoA dehydrogenase from higher plant mitochondria.
European journal of biochemistry.
2001 Mar; 268(5):1332-9. doi:
10.1046/j.1432-1327.2001.01999.x
. [PMID: 11231285] - A Sener, B Reusens, C Remacle, J J Hoet, W J Malaisse. Nutrient metabolism in pancreatic islets from protein malnourished rats.
Biochemical and molecular medicine.
1996 Oct; 59(1):62-7. doi:
10.1006/bmme.1996.0066
. [PMID: 8902196] - D G Hine, K Tanaka. The identification and the excretion pattern of isovaleryl glucuronide in the urine of patients with isovaleric acidemia.
Pediatric research.
1984 Jun; 18(6):508-12. doi:
10.1203/00006450-198406000-00004
. [PMID: 6547525] - N Gregersen. The specific inhibition of the pyruvate dehydrogenase complex from pig kidney by propionyl-CoA and isovaleryl-Co-A.
Biochemical medicine.
1981 Aug; 26(1):20-7. doi:
10.1016/0006-2944(81)90026-0
. [PMID: 7295301]