UDP Xylose (BioDeep_00000003572)
Main id: BioDeep_00000018667
natural product
代谢物信息卡片
{[(2R,3S,4R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[hydroxy({[(3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid
化学式: C14H22N2O16P2 (536.0445)
中文名称:
谱图信息:
最多检出来源 () 0%
分子结构信息
SMILES: C1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)O
InChI: InChI=1/C14H22N2O16P2/c17-5-3-28-13(11(22)8(5)19)31-34(26,27)32-33(24,25)29-4-6-9(20)10(21)12(30-6)16-2-1-7(18)15-14(16)23/h1-2,5-6,8-13,17,19-22H,3-4H2,(H,24,25)(H,26,27)(H,15,18,23)/t5-,6-,8+,9-,10-,11-,12?,13-/m1/s1/f/h15,24,26H
描述信息
Acquisition and generation of the data is financially supported in part by CREST/JST.
COVID info from COVID-19 Disease Map
Corona-virus
Coronavirus
SARS-CoV-2
COVID-19
SARS-CoV
COVID19
SARS2
SARS
同义名列表
10 个代谢物同义名
{[(2R,3S,4R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[hydroxy({[(3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid; alpha-delta-Xylopyranosyl ester; alpha-D-Xylopyranosyl ester; Uridine diphosphate xylose; UDP-delta-Xylose; UDP-D-xylose; UDP Xylose; UDP-Xylose; UDP-alpha; UDP-D-xylose
数据库引用编号
16 个数据库交叉引用编号
- KEGG: C00190
- PubChem: 23724459
- PubChem: 439179
- Metlin: METLIN5948
- MeSH: Uridine Diphosphate Xylose
- CAS: 3616-06-6
- MoNA: PS060410
- MoNA: PS060408
- MoNA: PR100711
- MoNA: PS060407
- MoNA: PS060409
- ChEBI: CHEBI:16082
- PubChem: 3490
- PDB-CCD: UDX
- 3DMET: B04645
- KNApSAcK: 16082
分类词条
相关代谢途径
Reactome(0)
BioCyc(0)
PlantCyc(0)
代谢反应
14 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(0)
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(1)
- @COVID-19 Disease
Map["name"]:
2-Methyl-3-acetoacetyl-CoA + Coenzyme A ⟶ Acetyl-CoA + Propanoyl-CoA
PathBank(13)
- Anthocyanidin Sambubioside Biosynthesis:
Delphinidin 3-glucoside + UDP-D-Xylose ⟶ Delphinidin 3-sambubioside + Hydrogen Ion + Uridine 5'-diphosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia II (GALK):
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia III:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia II (GALK):
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia III:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Nucleotide Sugars Metabolism:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia II (GALK):
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate - Galactosemia III:
Adenosine triphosphate + D-Galactose ⟶ Adenosine diphosphate + Galactose 1-phosphate
PharmGKB(0)
0 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：
- PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。
文献列表
- Zhimin Li, Runping Chen, Yufang Wen, Hanxiang Liu, Yangyang Chen, Xiaoyu Wu, Youxin Yang, Xinru Wu, Yong Zhou, Jianping Liu. Comprehensive analysis of the UDP-glucuronate decarboxylase (UXS) gene family in tobacco and functional characterization of NtUXS16 in Golgi apparatus in Arabidopsis.
BMC plant biology.
2023 Nov; 23(1):551. doi:
10.1186/s12870-023-04575-3. [PMID: 37936064] - Nan Ruan, Zhengjun Dang, Meihan Wang, Liyu Cao, Ye Wang, Sitong Liu, Yijun Tang, Yuwei Huang, Qun Zhang, Quan Xu, Wenfu Chen, Fengcheng Li. FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice.
Journal of experimental botany.
2022 04; 73(8):2320-2335. doi:
10.1093/jxb/erac036. [PMID: 35104839] - Chen Chen, Xianhai Zhao, Xuchuan Wang, Bo Wang, Huiling Li, Jiaxun Feng, Aimin Wu. Mutagenesis of UDP-xylose epimerase and xylan arabinosyl-transferase decreases arabinose content and improves saccharification of rice straw.
Plant biotechnology journal.
2021 05; 19(5):863-865. doi:
10.1111/pbi.13552. [PMID: 33471384] - Meng Zhang, Fu-Dong Li, Kai Li, Zi-Long Wang, Yu-Xi Wang, Jun-Bin He, Hui-Fei Su, Zhong-Yi Zhang, Chang-Biao Chi, Xiao-Meng Shi, Cai-Hong Yun, Zhi-Yong Zhang, Zhen-Ming Liu, Liang-Ren Zhang, Dong-Hui Yang, Ming Ma, Xue Qiao, Min Ye. Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase from Glycyrrhiza glabra.
Journal of the American Chemical Society.
2020 02; 142(7):3506-3512. doi:
10.1021/jacs.9b12211. [PMID: 31986016] - Xianhai Zhao, Nian Liu, Na Shang, Wei Zeng, Berit Ebert, Carsten Rautengarten, Qing-Yin Zeng, Huiling Li, Xiaoyang Chen, Cherie Beahan, Antony Bacic, Joshua L Heazlewood, Ai-Min Wu. Three UDP-xylose transporters participate in xylan biosynthesis by conveying cytosolic UDP-xylose into the Golgi lumen in Arabidopsis.
Journal of experimental botany.
2018 02; 69(5):1125-1134. doi:
10.1093/jxb/erx448. [PMID: 29300997] - Ruiqin Zhong, Quincy Teng, Marziyeh Haghighat, Youxi Yuan, Samuel T Furey, Robert L Dasher, Zheng-Hua Ye. Cytosol-Localized UDP-Xylose Synthases Provide the Major Source of UDP-Xylose for the Biosynthesis of Xylan and Xyloglucan.
Plant & cell physiology.
2017 01; 58(1):156-174. doi:
10.1093/pcp/pcw179. [PMID: 28011867] - Sen Yin, Jian-Qiang Kong. Transcriptome-guided gene isolation and functional characterization of UDP-xylose synthase and UDP-D-apiose/UDP-D-xylose synthase families from Ornithogalum caudatum Ait.
Plant cell reports.
2016 Nov; 35(11):2403-2421. doi:
10.1007/s00299-016-2044-5. [PMID: 27591771] - Alan T Culbertson, Yi-Hsiang Chou, Adrienne L Smith, Zachary T Young, Alesia A Tietze, Sylvain Cottaz, Régis Fauré, Olga A Zabotina. Enzymatic Activity of Xyloglucan Xylosyltransferase 5.
Plant physiology.
2016 07; 171(3):1893-904. doi:
10.1104/pp.16.00361. [PMID: 27208276] - Xu C Duan, Ai M Lu, Bin Gu, Zhi P Cai, Hong Y Ma, Shuang Wei, Pedro Laborda, Li Liu, Josef Voglmeir. Functional characterization of the UDP-xylose biosynthesis pathway in Rhodothermus marinus.
Applied microbiology and biotechnology.
2015 Nov; 99(22):9463-72. doi:
10.1007/s00253-015-6683-1. [PMID: 26033773] - Joachim Kuhn, Christian Götting, Brendan J Beahm, Carolyn R Bertozzi, Isabel Faust, Patricia Kuzaj, Cornelius Knabbe, Doris Hendig. Xylosyltransferase II is the predominant isoenzyme which is responsible for the steady-state level of xylosyltransferase activity in human serum.
Biochemical and biophysical research communications.
2015 Apr; 459(3):469-74. doi:
10.1016/j.bbrc.2015.02.129. [PMID: 25748573] - Berit Ebert, Carsten Rautengarten, Xiaoyuan Guo, Guangyan Xiong, Solomon Stonebloom, Andreia M Smith-Moritz, Thomas Herter, Leanne Jade G Chan, Paul D Adams, Christopher J Petzold, Markus Pauly, William G T Willats, Joshua L Heazlewood, Henrik Vibe Scheller. Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis.
The Plant cell.
2015 Apr; 27(4):1218-27. doi:
10.1105/tpc.114.133827. [PMID: 25804536] - Xufeng Xiao, Jianjun Lei, Bihao Cao, Guoju Chen, Changming Chen. cDNA-AFLP analysis on bolting or flowering of flowering Chinese cabbage and molecular characteristics of BrcuDFR-like/BrcuAXS gene.
Molecular biology reports.
2012 Jul; 39(7):7525-31. doi:
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Molecular pharmacology.
2011 Mar; 79(3):472-8. doi:
10.1124/mol.110.069336. [PMID: 21088224] - Xiaogang Gu, John Glushka, Yanbin Yin, Ying Xu, Timothy Denny, James Smith, Yingnan Jiang, Maor Bar-Peled. Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family.
The Journal of biological chemistry.
2010 Mar; 285(12):9030-40. doi:
10.1074/jbc.m109.066803. [PMID: 20118241] - Wei Zeng, Mohor Chatterjee, Ahmed Faik. UDP-Xylose-stimulated glucuronyltransferase activity in wheat microsomal membranes: characterization and role in glucurono(arabino)xylan biosynthesis.
Plant physiology.
2008 May; 147(1):78-91. doi:
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Journal of biochemistry.
2007 Apr; 141(4):593-600. doi:
10.1093/jb/mvm064. [PMID: 17317689] - David M Cavalier, Kenneth Keegstra. Two xyloglucan xylosyltransferases catalyze the addition of multiple xylosyl residues to cellohexaose.
The Journal of biological chemistry.
2006 Nov; 281(45):34197-207. doi:
10.1074/jbc.m606379200. [PMID: 16982611] - Takuji Oka, Yoshifumi Jigami. Reconstruction of de novo pathway for synthesis of UDP-glucuronic acid and UDP-xylose from intrinsic UDP-glucose in Saccharomyces cerevisiae.
The FEBS journal.
2006 Jun; 273(12):2645-57. doi:
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The Journal of organic chemistry.
2003 Jul; 68(14):5780-3. doi:
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Archives of biochemistry and biophysics.
2002 Nov; 407(2):209-16. doi:
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Proceedings of the National Academy of Sciences of the United States of America.
2002 Oct; 99(22):14218-23. doi:
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Analytical biochemistry.
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