Mesobilirubinogen (BioDeep_00000003497)

 

Secondary id: BioDeep_00000229654, BioDeep_00000419521

human metabolite Endogenous


代谢物信息卡片


3-(2-{[3-(2-carboxyethyl)-5-[(4-ethyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-2-yl]methyl}-5-[(3-ethyl-4-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl)propanoic acid

化学式: C33H44N4O6 (592.3261)
中文名称: 尿胆素原
谱图信息: 最多检出来源 Homo sapiens(feces) 40.78%

分子结构信息

SMILES: CCC1=C(C(=O)NC1CC2=C(C(=C(N2)CC3=C(C(=C(N3)CC4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
InChI: InChI=1S/C33H44N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h26-27,34-35H,7-15H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)

描述信息

Mesobilirubinogen (also known as I-urobilinogen) is a tetrapyrrole chemical compound that is closely related to two other compounds: urobilinogen (also known as D-urobilinogen) and stercobilinogen (also known as L-urobilinogen). Specifically, urobilinogen can be reduced to form mesobilirubinogen, and mesobilirubinogen can be further reduced to form stercobilinogen. Confusingly, all three of these compounds are frequently collectively referred to as "urobilinogens". Urobilinogen is the parent compound of both stercobilin (the pigment that is responsible for the brown colour of feces) and urobilin (the pigment that is responsible for the yellow colour of urine). Urobilinogen is formed through the microbial degradation of its parent compound bilirubin. Urobilinogen is actually generated through the degradation of heme, the red pigment in hemoglobin and red blood cells (RBCs). RBCs have a life span of about 120 days. When the RBCs have reached the end of their useful lifespan, the cells are engulfed by macrophages and their constituents recycled or disposed of. Heme is broken down when the heme ring is opened by the enzyme known as heme oxygenase, which is found in the endoplasmic reticulum of the macrophages. The oxidation process produces the linear tetrapyrrole known as biliverdin along with ferric iron (Fe3+), and carbon monoxide (CO). In the next reaction, a second methylene group (located between rings III and IV of the porphyrin ring) is reduced by the enzyme known as biliverdin reductase, producing bilirubin. Bilirubin is significantly less extensively conjugated than biliverdin. This reduction causes a change in the colour of the biliverdin molecule from blue-green (vert or verd for green) to yellow-red, which is the colour of bilirubin (ruby or rubi for red). In plasma, virtually all the bilirubin is tightly bound to plasma proteins, largely albumin, because it is only sparingly soluble in aqueous solutions at physiological pH. In the sinusoids, unconjugated bilirubin dissociates from albumin, enters the liver cells across the cell membrane through non-ionic diffusion to the smooth endoplasmatic reticulum. In hepatocytes, bilirubin-UDP-glucuronyltransferase (bilirubin-UGT) adds 2 additional glucuronic acid molecules to bilirubin to produce the more water-soluble version of the molecule known as bilirubin diglucuronide. The bilirubin diglucuronide is transferred rapidly across the canalicular membrane into the bile canaliculi where it is then excreted as bile into the large intestine. The bilirubin is further degraded (reduced) by microbes present in the large intestine to form a colourless product known as urobilinogen. Urobilinogen that remains in the colon can either be reduced to stercobilinogen and finally oxidized to stercobilin, or it can be directly reduced to stercobilin. Some of the urobilinogen produced by the gut bacteria is reabsorbed and re-enters the enterohepatic circulation. This reabsorbed urobilinogen is oxidized and converted to urobilin. The urobilin is processed through the kidneys and then excreted in the urine, which causes the yellowish colour in urine.
Urobilinogen is an uribiniloid, the product of bilirubin reduction in multiple sequential reactions. Urobilinogens are colorless chromogens that may in turn be oxidized to respective yellow oxidation products, urobilins. Under normal conditions only small amounts of bilirubin can be found in stools of adults while urobilinoids are predominant bile pigments (50-250 mg/day). Only negligible amounts of fecal urobilinoids are present in the intestinal lumen of infants during the first months of their life, due to undeveloped intestinal microflora capable of reducing bilirubin. This presumably contributes importantly to the pathogenesis of neonatal jaundice. In adults, the urobilinoid production is highly efficient. At times, it is re-excreted in the urine, where it may be later oxidized to urobilin. (PMID: 16504607) [HMDB]

同义名列表

13 个代谢物同义名

3-(2-{[3-(2-carboxyethyl)-5-[(4-ethyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-2-yl]methyl}-5-[(3-ethyl-4-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl)propanoic acid; 2,17-Diethyl-1,4,5,10,15,16,19,22,23,24-decahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid; 2,17-Diethyl-1,4,5,10,15,16,19,22,23,24-decahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoate; 2,17-Diethyl-1,4,5,10,15,16,19,22,23,24-decahydro-3,7,13,18-tetramethyl-1,19-dioxo-biline-8,12-dipropionic acid; 8,12-Bis(2-carboxyethyl)-3,18-diethyl-2,7,13,17-tetramethylbilane-1,19(4H,16H)-dione; Mesobilirubinogen ixalpha; Mesobilirubinogen IXα; Urobilinogen ixalpha; Mesobilirubinogen; Urobilinogen IXα; I-urobilinogen; UROBILINOGEN; I-Urobilinogen



数据库引用编号

16 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 8 AKR1B1, ALB, CAT, CPOX, ELANE, G6PD, HPGDS, PTGS2
Peripheral membrane protein 2 G6PD, PTGS2
Endosome membrane 1 CD1A
Endoplasmic reticulum membrane 2 CD4, PTGS2
Nucleus 1 ALB
cytosol 9 AKR1B1, ALB, CAT, CPOX, ELANE, G6PD, GPT, GSR, HPGDS
phagocytic vesicle 1 ELANE
centrosome 1 ALB
nucleoplasm 2 AKR1B1, HPGDS
Cell membrane 3 CD1A, CD4, HAVCR1
cell surface 3 ELANE, EPO, HAVCR1
Golgi apparatus 1 ALB
Golgi membrane 1 INS
Cytoplasm, cytosol 1 G6PD
plasma membrane 4 BCHE, CD1A, CD4, HAVCR1
Membrane 4 CAT, CD1A, CPOX, G6PD
caveola 1 PTGS2
extracellular exosome 10 AKR1B1, ALB, CAT, ELANE, EPO, G6PD, GPT, GSR, HP, LCN2
endoplasmic reticulum 2 ALB, PTGS2
extracellular space 11 AKR1B1, ALB, BCHE, CD1A, CRP, ELANE, EPO, HP, IL6, INS, LCN2
mitochondrion 4 AKR1B1, CAT, CPOX, GSR
protein-containing complex 3 ALB, CAT, PTGS2
intracellular membrane-bounded organelle 3 CAT, G6PD, HPGDS
Microsome membrane 1 PTGS2
Single-pass type I membrane protein 3 CD1A, CD4, HAVCR1
Secreted 8 ALB, BCHE, CRP, EPO, HP, IL6, INS, LCN2
extracellular region 10 ALB, BCHE, CAT, CRP, ELANE, EPO, HP, IL6, INS, LCN2
cytoplasmic side of plasma membrane 1 G6PD
mitochondrial matrix 2 CAT, GSR
Cytoplasmic vesicle lumen 1 LCN2
anchoring junction 1 ALB
centriolar satellite 1 G6PD
motile cilium 1 HAVCR1
external side of plasma membrane 3 CD1A, CD4, GSR
Early endosome 1 CD4
Membrane raft 2 CD1A, CD4
focal adhesion 1 CAT
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
mitochondrial intermembrane space 1 CPOX
collagen-containing extracellular matrix 1 ELANE
secretory granule 1 ELANE
Nucleus inner membrane 1 PTGS2
Nucleus outer membrane 1 PTGS2
nuclear inner membrane 1 PTGS2
nuclear outer membrane 1 PTGS2
neuron projection 1 PTGS2
ciliary basal body 1 ALB
centriole 1 ALB
spindle pole 1 ALB
blood microparticle 3 ALB, BCHE, HP
endosome lumen 1 INS
cell body 1 EPO
ficolin-1-rich granule lumen 1 CAT
secretory granule lumen 3 CAT, EPO, INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 6 ALB, BCHE, CD4, IL6, INS, PTGS2
transcription repressor complex 1 ELANE
platelet alpha granule lumen 1 ALB
specific granule lumen 3 ELANE, HP, LCN2
tertiary granule lumen 1 HP
transport vesicle 1 INS
azurophil granule lumen 1 ELANE
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
nuclear envelope lumen 1 BCHE
clathrin-coated endocytic vesicle membrane 1 CD4
Cytoplasmic vesicle, phagosome 1 ELANE
endocytic vesicle lumen 1 HP
haptoglobin-hemoglobin complex 1 HP
T cell receptor complex 1 CD4
catalase complex 1 CAT
interleukin-6 receptor complex 1 IL6
ciliary transition fiber 1 ALB
Cytoplasmic granule lumen 1 LCN2


文献列表

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