2-Phosphoglyceric acid (BioDeep_00000018614)
Secondary id: BioDeep_00000003412, BioDeep_00001868854
human metabolite PANOMIX_OTCML-2023 Endogenous blood metabolite natural product BioNovoGene_Lab2019
代谢物信息卡片
化学式: C3H7O7P (185.9929402)
中文名称: 2-磷酸甘油酸
谱图信息:
最多检出来源 Homo sapiens(blood) 0.66%
Last reviewed on 2024-11-04.
Cite this Page
2-Phosphoglyceric acid. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China.
https://query.biodeep.cn/s/2-phosphoglyceric_acid (retrieved
2024-11-08) (BioDeep RN: BioDeep_00000018614). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
分子结构信息
SMILES: C(C(C(=O)O)OP(=O)(O)O)O
InChI: InChI=1S/C3H7O7P/c4-1-2(3(5)6)10-11(7,8)9/h2,4H,1H2,(H,5,6)(H2,7,8,9)
描述信息
2-Phosphoglyceric acid (2PGA) is a glyceric acid which serves as the substrate in the ninth step of glycolysis. It is catalyzed by enolase into phosphoenolpyruvate (PEP), the penultimate step in the conversion of glucose to pyruvate. Enolase catalyzes the beta-elimination reaction in a stepwise manner wherein OH- is eliminated from C3 of a discrete carbanion (enolate) intermediate. This intermediate is created by removal of the proton from C2 of 2PGA by a base in the active site. (PMID: 8994873, Wikipedia) [HMDB]
2-Phosphoglyceric acid (2PGA) is a glyceric acid which serves as the substrate in the ninth step of glycolysis. It is catalyzed by enolase into phosphoenolpyruvate (PEP), the penultimate step in the conversion of glucose to pyruvate. Enolase catalyzes the beta-elimination reaction in a stepwise manner wherein OH- is eliminated from C3 of a discrete carbanion (enolate) intermediate. This intermediate is created by removal of the proton from C2 of 2PGA by a base in the active site (PMID: 8994873, Wikipedia).
2-Phosphoglyceric acid. CAS Common Chemistry. CAS, a division of the American Chemical Society, n.d. https://commonchemistry.cas.org/detail?cas_rn=2553-59-5 (retrieved 2024-11-04) (CAS RN: 2553-59-5). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
同义名列表
24 个代谢物同义名
3-Hydroxy-2-(phosphonooxy)propanoic acid; 3-Hydroxy-2-phosphonooxypropanoic acid; 2-(Dihydrogen phosphate)glyceric acid; 3-Hydroxy-2-(phosphonooxy)propanoate; 2-Phosphoglycerate, monosodium salt; 3-Hydroxy-2-phosphonooxypropanoate; 2-(Dihydrogen phosphate)glycerate; 2-Phosphoglycerate, (+-)-isomer; 2-Phosphoglycerate, (R)-isomer; 2-Phosphoglycerate, (S)-isomer; 2-phospho-DL-Glyceric acid; 2-Phospho-D-glyceric acid; Glyceric acid 2-phosphate; 2-phosphoglyceric acid; DL-2-Phosphoglycerate; 2-phospho-D-Glycerate; Glycerate 2-phosphate; 2-P-D-Glyceric acid; 2-phosphoglycerate; 2-P-Glyceric acid; Phosphoglycerate; 2-P-D-Glycerate; 2-P-Glycerate; 2-Phosphoglyceric acid
数据库引用编号
18 个数据库交叉引用编号
- ChEBI: CHEBI:17835
- ChEBI: CHEBI:24344
- KEGG: C00631
- PubChem: 59
- HMDB: HMDB0000362
- DrugBank: DB01709
- Wikipedia: 2-Phosphoglyceric_acid
- MetaCyc: 2-PG
- foodb: FDB023161
- CAS: 2553-59-5
- PMhub: MS000009635
- KNApSAcK: C00000123
- PDB-CCD: 2PG
- 3DMET: B01295
- NIKKAJI: J71.811D
- RefMet: 2-Phosphoglyceric acid
- LOTUS: LTS0003223
- BioNovoGene_Lab2019: BioNovoGene_Lab2019-90
分类词条
相关代谢途径
Reactome(0)
BioCyc(6)
PlantCyc(0)
代谢反应
8 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(0)
WikiPathways(4)
- Glycolysis and gluconeogenesis:
Aspartate ⟶ Oxaloacetate
- Glycolysis and gluconeogenesis:
Phosphoenolpyruvate ⟶ Pyruvic acid
- Aerobic glycolysis:
PYR ⟶ LAC
- Metabolic Epileptic Disorders:
P-enolpyruvate ⟶ Pyruvate
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(4)
- Gluconeogenesis from L-Malic Acid:
Adenosine monophosphate + Hydrogen Ion + Phosphate + Phosphoenolpyruvic acid ⟶ Adenosine triphosphate + Pyruvic acid + Water
- Gluconeogenesis from L-Malic Acid:
Adenosine monophosphate + Hydrogen Ion + Phosphate + Phosphoenolpyruvic acid ⟶ Adenosine triphosphate + Pyruvic acid + Water
- D-Glucarate and D-Galactarate Degradation:
Adenosine triphosphate + Pyruvic acid + Water ⟶ Adenosine monophosphate + Hydrogen Ion + Phosphate + Phosphoenolpyruvic acid
- D-Glucarate and D-Galactarate Degradation:
Adenosine triphosphate + Pyruvic acid + Water ⟶ Adenosine monophosphate + Hydrogen Ion + Phosphate + Phosphoenolpyruvic acid
PharmGKB(0)
20 个相关的物种来源信息
- 4890 - Ascomycota: LTS0003223
- 91061 - Bacilli: LTS0003223
- 2 - Bacteria: LTS0003223
- 5475 - Candida: LTS0003223
- 5476 - Candida albicans: 10.1007/S11306-016-1134-2
- 5476 - Candida albicans: LTS0003223
- 766764 - Debaryomycetaceae: LTS0003223
- 543 - Enterobacteriaceae: LTS0003223
- 561 - Escherichia: LTS0003223
- 562 - Escherichia coli: LTS0003223
- 3039 - Euglena gracilis: 10.3389/FBIOE.2021.662655
- 4751 - Fungi: LTS0003223
- 1236 - Gammaproteobacteria: LTS0003223
- 9606 - Homo sapiens: -
- 9606 - Homo sapiens: 10.1007/S11306-016-1051-4
- 4891 - Saccharomycetes: LTS0003223
- 90964 - Staphylococcaceae: LTS0003223
- 1279 - Staphylococcus: LTS0003223
- 1280 - Staphylococcus aureus: LTS0003223
- 1142 - Synechocystis: 10.1104/PP.108.129403
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:
- PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。
文献列表
- Pauline Duminil, Marlène Davanture, Céline Oury, Edouard Boex-Fontvieille, Guillaume Tcherkez, Michel Zivy, Michael Hodges, Nathalie Glab. Arabidopsis thaliana 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation.
The Plant journal : for cell and molecular biology.
2021 09; 107(5):1478-1489. doi:
10.1111/tpj.15395
. [PMID: 34174129] - Muhammad Mazhar Fareed, Mohamed A El-Esawi, Enas M El-Ballat, Gaber El-Saber Batiha, Abdur Rauf, Fatma M El-Demerdash, Fahad A Alhumaydhi, Suliman A Alsagaby. In Silico Drug Screening Analysis against the Overexpression of PGAM1 Gene in Different Cancer Treatments.
BioMed research international.
2021; 2021(?):5515692. doi:
10.1155/2021/5515692
. [PMID: 34195264] - Lior Zelcbuch, Manuel Razo-Mejia, Elad Herz, Sagit Yahav, Niv Antonovsky, Hagar Kroytoro, Ron Milo, Arren Bar-Even. An in vivo metabolic approach for deciphering the product specificity of glycerate kinase proves that both E. coli's glycerate kinases generate 2-phosphoglycerate.
PloS one.
2015; 10(3):e0122957. doi:
10.1371/journal.pone.0122957
. [PMID: 25823014] - Guoliang Qian, Yanbing Zhang, Yijin Zhou, Chunhui Liu, Yancun Zhao, Zhiwei Song, Jiaqin Fan, Baishi Hu, Fengquan Liu. epv, Encoding a hypothetical protein, is regulated by DSF-mediating quorum sensing as well as global regulator Clp and is required for optimal virulence in Xanthomonas oryzae pv. oryzicola.
Phytopathology.
2012 Sep; 102(9):841-7. doi:
10.1094/phyto-02-12-0020-r
. [PMID: 22881870] - J Kido, M Bando, Y Hiroshima, H Iwasaka, K Yamada, N Ohgami, T Nambu, M Kataoka, T Yamamoto, Y Shinohara, I Sagawa, T Nagata. Analysis of proteins in human gingival crevicular fluid by mass spectrometry.
Journal of periodontal research.
2012 Aug; 47(4):488-99. doi:
10.1111/j.1600-0765.2011.01458.x
. [PMID: 22220998] - Carolina Gimiliani Lembke, Milton Yutaka Nishiyama, Paloma Mieko Sato, Rodrigo Fandiño de Andrade, Glaucia Mendes Souza. Identification of sense and antisense transcripts regulated by drought in sugarcane.
Plant molecular biology.
2012 Jul; 79(4-5):461-77. doi:
10.1007/s11103-012-9922-1
. [PMID: 22610347] - M A Troncoso-Ponce, J Rivoal, M Venegas-Calerón, S Dorion, R Sánchez, F J Cejudo, R Garcés, E Martínez-Force. Molecular cloning and biochemical characterization of three phosphoglycerate kinase isoforms from developing sunflower (Helianthus annuus L.) seeds.
Phytochemistry.
2012 Jul; 79(?):27-38. doi:
10.1016/j.phytochem.2012.04.001
. [PMID: 22552275] - Laurence Meslet-Cladière, Olivier Vallon. A new method to identify flanking sequence tags in chlamydomonas using 3'-RACE.
Plant methods.
2012 Jun; 8(1):21. doi:
10.1186/1746-4811-8-21
. [PMID: 22735168] - Andrii Dinets, Mykola Hulchiy, Anastasios Sofiadis, Mehran Ghaderi, Anders Höög, Catharina Larsson, Jan Zedenius. Clinical, genetic, and immunohistochemical characterization of 70 Ukrainian adult cases with post-Chornobyl papillary thyroid carcinoma.
European journal of endocrinology.
2012 Jun; 166(6):1049-60. doi:
10.1530/eje-12-0144
. [PMID: 22457234] - Shu-Ching Mary Wang, Dennis H Dowhan, Natalie A Eriksson, George E O Muscat. CARM1/PRMT4 is necessary for the glycogen gene expression programme in skeletal muscle cells.
The Biochemical journal.
2012 Jun; 444(2):323-31. doi:
10.1042/bj20112033
. [PMID: 22428544] - J Musembi Mutuku, Akihiro Nose. Changes in the contents of metabolites and enzyme activities in rice plants responding to Rhizoctonia solani Kuhn infection: activation of glycolysis and connection to phenylpropanoid pathway.
Plant & cell physiology.
2012 Jun; 53(6):1017-32. doi:
10.1093/pcp/pcs047
. [PMID: 22492233] - Johannes Freitag, Julia Ast, Michael Bölker. Cryptic peroxisomal targeting via alternative splicing and stop codon read-through in fungi.
Nature.
2012 May; 485(7399):522-5. doi:
10.1038/nature11051
. [PMID: 22622582] - Candida Vannini, Milena Marsoni, Carlo Cantara, Maria Concetta De Pinto, Vittoria Locato, Laura De Gara, Marcella Bracale. The soluble proteome of tobacco Bright Yellow-2 cells undergoing H₂O₂-induced programmed cell death.
Journal of experimental botany.
2012 May; 63(8):3137-55. doi:
10.1093/jxb/ers031
. [PMID: 22355080] - Wei Sun, Nerea Ubierna, Jian-Ying Ma, Asaph B Cousins. The influence of light quality on C4 photosynthesis under steady-state conditions in Zea mays and Miscanthus×giganteus: changes in rates of photosynthesis but not the efficiency of the CO2 concentrating mechanism.
Plant, cell & environment.
2012 May; 35(5):982-93. doi:
10.1111/j.1365-3040.2011.02466.x
. [PMID: 22082455] - Sudhakar Pandurangan, Agnieszka Pajak, Stephen J Molnar, Elroy R Cober, Sangeeta Dhaubhadel, Cinta Hernández-Sebastià, Werner M Kaiser, Randall L Nelson, Steven C Huber, Frédéric Marsolais. Relationship between asparagine metabolism and protein concentration in soybean seed.
Journal of experimental botany.
2012 May; 63(8):3173-84. doi:
10.1093/jxb/ers039
. [PMID: 22357599] - Li-Tian Yin, Fen Wang, Xiao-Li Meng, Hai-Long Wang, Hong-Li Liu, Jin-Yan Shen, Guo-Rong Yin. [Cloning, expression and antigenicity analysis of phosphoglycerate mutase 2 gene of Toxoplasma gondii].
Zhongguo ji sheng chong xue yu ji sheng chong bing za zhi = Chinese journal of parasitology & parasitic diseases.
2012 Apr; 30(2):86-9. doi:
NULL
. [PMID: 22908803] - Kunal B Kapadia, Parloop A Bhatt, Jigna S Shah. Association between altered thyroid state and insulin resistance.
Journal of pharmacology & pharmacotherapeutics.
2012 Apr; 3(2):156-60. doi:
10.4103/0976-500x.95517
. [PMID: 22629091] - Markus Niessen, Katrin Krause, Ina Horst, Norma Staebler, Stephanie Klaus, Stefanie Gaertner, Rashad Kebeish, Wagner L Araujo, Alisdair R Fernie, Christoph Peterhansel. Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice.
Journal of experimental botany.
2012 Apr; 63(7):2705-16. doi:
10.1093/jxb/err453
. [PMID: 22268146] - Wen-Ming Chen, Jurgen Prell, Euan K James, Der-Shyan Sheu, Shih-Yi Sheu. Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on symbiotic Burkholderia phymatum.
Microbiology (Reading, England).
2012 Apr; 158(Pt 4):1127-1136. doi:
10.1099/mic.0.055095-0
. [PMID: 22282515] - Myung Hee Nam, Sun Mi Huh, Kyung Mi Kim, Woong June Park, Jong Bok Seo, Kun Cho, Dool Yi Kim, Beom Gi Kim, In Sun Yoon. Comparative proteomic analysis of early salt stress-responsive proteins in roots of SnRK2 transgenic rice.
Proteome science.
2012 Mar; 10(?):25. doi:
10.1186/1477-5956-10-25
. [PMID: 22462395] - Raja S Payyavula, Duroy A Navarre, Joseph C Kuhl, Alberto Pantoja, Syamkumar S Pillai. Differential effects of environment on potato phenylpropanoid and carotenoid expression.
BMC plant biology.
2012 Mar; 12(?):39. doi:
10.1186/1471-2229-12-39
. [PMID: 22429339] - Paul John Andralojc, Pippa J Madgwick, Yong Tao, Alfred Keys, Jane L Ward, Michael H Beale, Jane E Loveland, Phil J Jackson, Antony C Willis, Steven Gutteridge, Martin A J Parry. 2-Carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase: evidence for a wider role in plant Rubisco regulation.
The Biochemical journal.
2012 Mar; 442(3):733-42. doi:
10.1042/bj20111443
. [PMID: 22132794] - Ashlee Higdon, Anne R Diers, Joo Yeun Oh, Aimee Landar, Victor M Darley-Usmar. Cell signalling by reactive lipid species: new concepts and molecular mechanisms.
The Biochemical journal.
2012 Mar; 442(3):453-64. doi:
10.1042/bj20111752
. [PMID: 22364280] - Sabrina Kleessen, Zoran Nikoloski. Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations.
BMC systems biology.
2012 Mar; 6(?):16. doi:
10.1186/1752-0509-6-16
. [PMID: 22409942] - Yan Wang, Xiaoli Peng, Wentao Xu, Yunbo Luo, Weiwei Zhao, Junran Hao, Zhihong Liang, Yu Zhang, Kunlun Huang. Transcript and protein profiling analysis of OTA-induced cell death reveals the regulation of the toxicity response process in Arabidopsis thaliana.
Journal of experimental botany.
2012 Mar; 63(5):2171-87. doi:
10.1093/jxb/err447
. [PMID: 22207617] - Randor Radakovits, Robert E Jinkerson, Susan I Fuerstenberg, Hongseok Tae, Robert E Settlage, Jeffrey L Boore, Matthew C Posewitz. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana.
Nature communications.
2012 Feb; 3(?):686. doi:
10.1038/ncomms1688
. [PMID: 22353717] - Juan A Tamayo-Ramos, Michel Flipphi, Ester Pardo, Paloma Manzanares, Margarita Orejas. L-rhamnose induction of Aspergillus nidulans α-L-rhamnosidase genes is glucose repressed via a CreA-independent mechanism acting at the level of inducer uptake.
Microbial cell factories.
2012 Feb; 11(?):26. doi:
10.1186/1475-2859-11-26
. [PMID: 22353731] - Mirko Zaffagnini, Mariette Bedhomme, Hayam Groni, Christophe H Marchand, Carine Puppo, Brigitte Gontero, Corinne Cassier-Chauvat, Paulette Decottignies, Stéphane D Lemaire. Glutathionylation in the photosynthetic model organism Chlamydomonas reinhardtii: a proteomic survey.
Molecular & cellular proteomics : MCP.
2012 Feb; 11(2):M111.014142. doi:
10.1074/mcp.m111.014142
. [PMID: 22122882] - Deepmala Sehgal, Vengaldas Rajaram, Ian Peter Armstead, Vincent Vadez, Yash Pal Yadav, Charles Thomas Hash, Rattan Singh Yadav. Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci.
BMC plant biology.
2012 Jan; 12(?):9. doi:
10.1186/1471-2229-12-9
. [PMID: 22251627] - Djédoux Maxime Angaman, Rocco Petrizzo, Francesc Hernández-Gras, Carmen Romero-Segura, Irene Pateraki, Montserrat Busquets, Albert Boronat. Precursor uptake assays and metabolic analyses in isolated tomato fruit chromoplasts.
Plant methods.
2012 Jan; 8(1):1. doi:
10.1186/1746-4811-8-1
. [PMID: 22243738] - Michael Kube, Jelena Mitrovic, Bojan Duduk, Ralf Rabus, Erich Seemüller. Current view on phytoplasma genomes and encoded metabolism.
TheScientificWorldJournal.
2012; 2012(?):185942. doi:
10.1100/2012/185942
. [PMID: 22550465] - F Guillon, C Larré, F Petipas, A Berger, J Moussawi, H Rogniaux, A Santoni, L Saulnier, F Jamme, M Miquel, L Lepiniec, B Dubreucq. A comprehensive overview of grain development in Brachypodium distachyon variety Bd21.
Journal of experimental botany.
2012 Jan; 63(2):739-55. doi:
10.1093/jxb/err298
. [PMID: 22016425] - Ying Wen Huang, Chung Chi Hu, Ming Ru Liou, Ban Yang Chang, Ching Hsiu Tsai, Menghsiao Meng, Na Sheng Lin, Yau Heiu Hsu. Hsp90 interacts specifically with viral RNA and differentially regulates replication initiation of Bamboo mosaic virus and associated satellite RNA.
PLoS pathogens.
2012; 8(5):e1002726. doi:
10.1371/journal.ppat.1002726
. [PMID: 22654666] - Fang Peng, Xianquan Zhan, Mao-Yu Li, Fan Fang, Guoqing Li, Cui Li, Peng-Fei Zhang, Zhuchu Chen. Proteomic and bioinformatics analyses of mouse liver microsomes.
International journal of proteomics.
2012; 2012(?):832569. doi:
10.1155/2012/832569
. [PMID: 22500222] - Yoichi Shimoda, Junkyu Han, Kiyokazu Kawada, Abderrazak Smaoui, Hiroko Isoda. Metabolomics analysis of Cistus monspeliensis leaf extract on energy metabolism activation in human intestinal cells.
Journal of biomedicine & biotechnology.
2012; 2012(?):428514. doi:
10.1155/2012/428514
. [PMID: 22523469] - Chia-Yen Hsiao, Ching-Yi Hung, Tung-Hu Tsai, Kin-Fu Chak. A Study of the Wound Healing Mechanism of a Traditional Chinese Medicine, Angelica sinensis, Using a Proteomic Approach.
Evidence-based complementary and alternative medicine : eCAM.
2012; 2012(?):467531. doi:
10.1155/2012/467531
. [PMID: 22536285] - Suxia Cui, Jia Hu, Shilei Guo, Jie Wang, Yali Cheng, Xinxing Dang, Lili Wu, Yikun He. Proteome analysis of Physcomitrella patens exposed to progressive dehydration and rehydration.
Journal of experimental botany.
2012 Jan; 63(2):711-26. doi:
10.1093/jxb/err296
. [PMID: 21994173] - William R Lagor, David W Fields, Sumeet A Khetarpal, Arthi Kumaravel, Wen Lin, Nathaniel Weintraub, Kaijin Wu, Sarah F Hamm-Alvarez, Denise Drazul-Schrader, Margarita de la Llera-Moya, George H Rothblat, Daniel J Rader. The effects of apolipoprotein F deficiency on high density lipoprotein cholesterol metabolism in mice.
PloS one.
2012; 7(2):e31616. doi:
10.1371/journal.pone.0031616
. [PMID: 22363685] - Xing Fan, Li-Na Sha, Jian Zeng, Hou-Yang Kang, Hai-Qin Zhang, Xiao-Li Wang, Li Zhang, Rui-Wu Yang, Chun-Bang Ding, You-Liang Zheng, Yong-Hong Zhou. Evolutionary dynamics of the Pgk1 gene in the polyploid genus Kengyilia (Triticeae: Poaceae) and its diploid relatives.
PloS one.
2012; 7(2):e31122. doi:
10.1371/journal.pone.0031122
. [PMID: 22363562] - Jian Shen, Weizhi Wang, Jindao Wu, Bing Feng, Wen Chen, Meng Wang, Jincao Tang, Fuqiang Wang, Feng Cheng, Liyong Pu, Qiyun Tang, Xuehao Wang, Xiangcheng Li. Comparative proteomic profiling of human bile reveals SSP411 as a novel biomarker of cholangiocarcinoma.
PloS one.
2012; 7(10):e47476. doi:
10.1371/journal.pone.0047476
. [PMID: 23118872] - Stephanus J Ferreira, Uwe Sonnewald. The mode of sucrose degradation in potato tubers determines the fate of assimilate utilization.
Frontiers in plant science.
2012; 3(?):23. doi:
10.3389/fpls.2012.00023
. [PMID: 22639642] - LingLin Wan, Juan Han, Min Sang, AiFen Li, Hong Wu, ShunJi Yin, ChengWu Zhang. De novo transcriptomic analysis of an oleaginous microalga: pathway description and gene discovery for production of next-generation biofuels.
PloS one.
2012; 7(4):e35142. doi:
10.1371/journal.pone.0035142
. [PMID: 22536352] - Huawu Jiang, Pingzhi Wu, Sheng Zhang, Chi Song, Yaping Chen, Meiru Li, Yongxia Jia, Xiaohua Fang, Fan Chen, Guojiang Wu. Global analysis of gene expression profiles in developing physic nut (Jatropha curcas L.) seeds.
PloS one.
2012; 7(5):e36522. doi:
10.1371/journal.pone.0036522
. [PMID: 22574177] - Jianfang Xu, Xiao Fan, Xiaowen Zhang, Dong Xu, Shanli Mou, Shaona Cao, Zhou Zheng, Jinlai Miao, Naihao Ye. Evidence of coexistence of C₃ and C₄ photosynthetic pathways in a green-tide-forming alga, Ulva prolifera.
PloS one.
2012; 7(5):e37438. doi:
10.1371/journal.pone.0037438
. [PMID: 22616009] - Bhavapriya Vaitheesvaran, Li Yang, Kirsten Hartil, Sherrye Glaser, Stephen Yazulla, James E Bruce, Irwin J Kurland. Peripheral effects of FAAH deficiency on fuel and energy homeostasis: role of dysregulated lysine acetylation.
PloS one.
2012; 7(3):e33717. doi:
10.1371/journal.pone.0033717
. [PMID: 22442717] - Malona V Alinsug, Fang Fang Chen, Ming Luo, Ready Tai, Liwen Jiang, Keqiang Wu. Subcellular localization of class II HDAs in Arabidopsis thaliana: nucleocytoplasmic shuttling of HDA15 is driven by light.
PloS one.
2012; 7(2):e30846. doi:
10.1371/journal.pone.0030846
. [PMID: 22363501] - Lihong Xiao, Liechi Zhang, Ge Yang, Honglin Zhu, Yikun He. Transcriptome of protoplasts reprogrammed into stem cells in Physcomitrella patens.
PloS one.
2012; 7(4):e35961. doi:
10.1371/journal.pone.0035961
. [PMID: 22545152] - Xiaolong Qian, Changling Li, Bo Pang, Meng Xue, Jian Wang, Jianguang Zhou. Spondin-2 (SPON2), a more prostate-cancer-specific diagnostic biomarker.
PloS one.
2012; 7(5):e37225. doi:
10.1371/journal.pone.0037225
. [PMID: 22615945] - Hai Wang, Shengbing Wang, Yuqing Lu, Sophie Alvarez, Leslie M Hicks, Xiaochun Ge, Yiji Xia. Proteomic analysis of early-responsive redox-sensitive proteins in Arabidopsis.
Journal of proteome research.
2012 Jan; 11(1):412-24. doi:
10.1021/pr200918f
. [PMID: 22050424] - Yi-Chang Liu, I-Hsuan Lin, Wei-Jen Chung, Wensi S Hu, Wailap Victor Ng, Chi-Yu Lu, Tsung-Yen Huang, Hung-Wei Shu, Kwang-Jen Hsiao, Shih-Feng Tsai, Chuan-Hsiung Chang, Chao-Hsiung Lin. Proteomics characterization of cytoplasmic and lipid-associated membrane proteins of human pathogen Mycoplasma fermentans M64.
PloS one.
2012; 7(4):e35304. doi:
10.1371/journal.pone.0035304
. [PMID: 22536369] - Chiara Pastore, Sara Zenoni, Giovanni Battista Tornielli, Gianluca Allegro, Silvia Dal Santo, Gabriele Valentini, Cesare Intrieri, Mario Pezzotti, Ilaria Filippetti. Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening.
BMC genomics.
2011 Dec; 12(?):631. doi:
10.1186/1471-2164-12-631
. [PMID: 22192855] - Céline Hamelin, Emilie Cornut, Florence Poirier, Sylvie Pons, Corinne Beaulieu, Jean-Philippe Charrier, Hader Haïdous, Eddy Cotte, Claude Lambert, Françoise Piard, Yasemin Ataman-Önal, Geneviève Choquet-Kastylevsky. Identification and verification of heat shock protein 60 as a potential serum marker for colorectal cancer.
The FEBS journal.
2011 Dec; 278(24):4845-59. doi:
10.1111/j.1742-4658.2011.08385.x
. [PMID: 21973086] - Stéphanie Daval, Lionel Lebreton, Kévin Gazengel, Morgane Boutin, Anne-Yvonne Guillerm-Erckelboudt, Alain Sarniguet. The biocontrol bacterium Pseudomonas fluorescens Pf29Arp strain affects the pathogenesis-related gene expression of the take-all fungus Gaeumannomyces graminis var. tritici on wheat roots.
Molecular plant pathology.
2011 Dec; 12(9):839-54. doi:
10.1111/j.1364-3703.2011.00715.x
. [PMID: 21726382] - Fazia Adyani Ahmad Fuad, Linda A Fothergill-Gilmore, Matthew W Nowicki, Lorna J Eades, Hugh P Morgan, Iain W McNae, Paul A M Michels, Malcolm D Walkinshaw. Phosphoglycerate mutase from Trypanosoma brucei is hyperactivated by cobalt in vitro, but not in vivo.
Metallomics : integrated biometal science.
2011 Dec; 3(12):1310-7. doi:
10.1039/c1mt00119a
. [PMID: 21993954] - Josirley de F C Carvalho, Pippa J Madgwick, Stephen J Powers, Alfred J Keys, Peter J Lea, Martin A J Parry. An engineered pathway for glyoxylate metabolism in tobacco plants aimed to avoid the release of ammonia in photorespiration.
BMC biotechnology.
2011 Nov; 11(?):111. doi:
10.1186/1472-6750-11-111
. [PMID: 22104170] - Ana M Fortes, Patricia Agudelo-Romero, Marta S Silva, Kashif Ali, Lisete Sousa, Federica Maltese, Young H Choi, Jerome Grimplet, José M Martinez-Zapater, Robert Verpoorte, Maria S Pais. Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening.
BMC plant biology.
2011 Nov; 11(?):149. doi:
10.1186/1471-2229-11-149
. [PMID: 22047180] - Hsiang-Hao Hsu, Sigrid Hoffmann, Giovana S Di Marco, Nicole Endlich, Jasna Peter-Katalinić, Thomas Weide, Hermann Pavenstädt. Downregulation of the antioxidant protein peroxiredoxin 2 contributes to angiotensin II-mediated podocyte apoptosis.
Kidney international.
2011 Nov; 80(9):959-969. doi:
10.1038/ki.2011.250
. [PMID: 21814176] - Yunliu Zeng, Zhiyong Pan, Yuduan Ding, Andan Zhu, Hongbo Cao, Qiang Xu, Xiuxin Deng. A proteomic analysis of the chromoplasts isolated from sweet orange fruits [Citrus sinensis (L.) Osbeck].
Journal of experimental botany.
2011 Nov; 62(15):5297-309. doi:
10.1093/jxb/err140
. [PMID: 21841170] - Ehud Katz, Kyung Hwan Boo, Ho Youn Kim, Richard A Eigenheer, Brett S Phinney, Vladimir Shulaev, Florence Negre-Zakharov, Avi Sadka, Eduardo Blumwald. Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development.
Journal of experimental botany.
2011 Nov; 62(15):5367-84. doi:
10.1093/jxb/err197
. [PMID: 21841177] - C M Westermann, L Dorland, O P van Diggelen, K Schoonderwoerd, J Bierau, H R Waterham, J H van der Kolk. Decreased oxidative phosphorylation and PGAM deficiency in horses suffering from atypical myopathy associated with acquired MADD.
Molecular genetics and metabolism.
2011 Nov; 104(3):273-8. doi:
10.1016/j.ymgme.2011.07.022
. [PMID: 21843962] - William J Chirico. Protein release through nonlethal oncotic pores as an alternative nonclassical secretory pathway.
BMC cell biology.
2011 Oct; 12(?):46. doi:
10.1186/1471-2121-12-46
. [PMID: 22008609] - Zhixin Zhao, Sarah M Assmann. The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.
Journal of experimental botany.
2011 Oct; 62(14):5179-89. doi:
10.1093/jxb/err223
. [PMID: 21813794] - Isabelle M Henry, Sebastien C Carpentier, Suzana Pampurova, Anais Van Hoylandt, Bart Panis, Rony Swennen, Serge Remy. Structure and regulation of the Asr gene family in banana.
Planta.
2011 Oct; 234(4):785-98. doi:
10.1007/s00425-011-1421-0
. [PMID: 21630042] - Sujon Sarowar, Youfu Zhao, Ruth Elena Soria-Guerra, Shahjahan Ali, Danman Zheng, Dongping Wang, Schuyler S Korban. Expression profiles of differentially regulated genes during the early stages of apple flower infection with Erwinia amylovora.
Journal of experimental botany.
2011 Oct; 62(14):4851-61. doi:
10.1093/jxb/err147
. [PMID: 21725032] - YuMei Zhang, JinMing Zhao, Yang Xiang, XiaoChun Bian, QiaoMei Zuo, Qi Shen, JunYi Gai, Han Xing. Proteomics study of changes in soybean lines resistant and sensitive to Phytophthora sojae.
Proteome science.
2011 Sep; 9(?):52. doi:
10.1186/1477-5956-9-52
. [PMID: 21899734] - Piyum A Khatibi, Justin Montanti, Nhuan P Nghiem, Kevin B Hicks, Greg Berger, Wynse S Brooks, Carl A Griffey, David G Schmale. Conversion of deoxynivalenol to 3-acetyldeoxynivalenol in barley-derived fuel ethanol co-products with yeast expressing trichothecene 3-O-acetyltransferases.
Biotechnology for biofuels.
2011 Sep; 4(?):26. doi:
10.1186/1754-6834-4-26
. [PMID: 21888629] - Timo Mühlhaus, Julia Weiss, Dorothea Hemme, Frederik Sommer, Michael Schroda. Quantitative shotgun proteomics using a uniform ¹⁵N-labeled standard to monitor proteome dynamics in time course experiments reveals new insights into the heat stress response of Chlamydomonas reinhardtii.
Molecular & cellular proteomics : MCP.
2011 Sep; 10(9):M110.004739. doi:
10.1074/mcp.m110.004739
. [PMID: 21610104] - Tzu-Ying Sung, Tsui-Yun Chung, Chih-Ping Hsu, Ming-Hsiun Hsieh. The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.
BMC plant biology.
2011 Aug; 11(?):118. doi:
10.1186/1471-2229-11-118
. [PMID: 21861936] - Osbaldo Resendis-Antonio, Magdalena Hernández, Emmanuel Salazar, Sandra Contreras, Gabriel Martínez Batallar, Yolanda Mora, Sergio Encarnación. Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling.
BMC systems biology.
2011 Jul; 5(?):120. doi:
10.1186/1752-0509-5-120
. [PMID: 21801415] - Apaporn Boonmee, Chantragan Srisomsap, Daranee Chokchaichamnankit, Aphichart Karnchanatat, Polkit Sangvanich. A proteomic analysis of Curcuma comosa Roxb. rhizomes.
Proteome science.
2011 Jul; 9(?):43. doi:
10.1186/1477-5956-9-43
. [PMID: 21801377] - Helin Tan, Xiaohui Yang, Fengxia Zhang, Xiu Zheng, Cunmin Qu, Jinye Mu, Fuyou Fu, Jiana Li, Rongzhan Guan, Hongsheng Zhang, Guodong Wang, Jianru Zuo. Enhanced seed oil production in canola by conditional expression of Brassica napus LEAFY COTYLEDON1 and LEC1-LIKE in developing seeds.
Plant physiology.
2011 Jul; 156(3):1577-88. doi:
10.1104/pp.111.175000
. [PMID: 21562329] - Iker Aranjuelo, Llorenç Cabrera-Bosquet, Rosa Morcuende, Jean Christophe Avice, Salvador Nogués, José Luis Araus, Rafael Martínez-Carrasco, Pilar Pérez. Does ear C sink strength contribute to overcoming photosynthetic acclimation of wheat plants exposed to elevated CO2?.
Journal of experimental botany.
2011 Jul; 62(11):3957-69. doi:
10.1093/jxb/err095
. [PMID: 21511906] - Chunlai Li, Yiqin Wang, Linchuan Liu, Yingchun Hu, Fengxia Zhang, Sod Mergen, Guodong Wang, Michael R Schläppi, Chengcai Chu. A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.
PLoS genetics.
2011 Jul; 7(7):e1002196. doi:
10.1371/journal.pgen.1002196
. [PMID: 21829379] - Babu Raman, Catherine K McKeown, Miguel Rodriguez, Steven D Brown, Jonathan R Mielenz. Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.
BMC microbiology.
2011 Jun; 11(?):134. doi:
10.1186/1471-2180-11-134
. [PMID: 21672225] - Steffi Werler, Andreas Poplinski, Jörg Gromoll, Joachim Wistuba. Expression of selected genes escaping from X inactivation in the 41, XX(Y)* mouse model for Klinefelter's syndrome.
Acta paediatrica (Oslo, Norway : 1992).
2011 Jun; 100(6):885-91. doi:
10.1111/j.1651-2227.2010.02112.x
. [PMID: 21241365] - Xiaoyun Wang, Wenjun Chen, Fengyu Hu, Chuanhuan Deng, Chenhui Zhou, Xiaoli Lv, Yongxiu Fan, Jingtao Men, Yan Huang, Jiufeng Sun, Dong Hu, Jingfang Chen, Yabo Yang, Chi Liang, Huanqin Zheng, Xuchu Hu, Jin Xu, Zhongdao Wu, Xinbing Yu. Clonorchis sinensis enolase: identification and biochemical characterization of a glycolytic enzyme from excretory/secretory products.
Molecular and biochemical parasitology.
2011 Jun; 177(2):135-42. doi:
10.1016/j.molbiopara.2011.02.011
. [PMID: 21382423] - Xianping Fang, Huasheng Ma, Dezhao Lu, Hong Yu, Wenguo Lai, Songlin Ruan. Comparative proteomics analysis of proteins expressed in the I-1 and I-2 internodes of strawberry stolons.
Proteome science.
2011 May; 9(?):26. doi:
10.1186/1477-5956-9-26
. [PMID: 21569547] - Achref Aloui, Ghislaine Recorbet, Franck Robert, Benoît Schoefs, Martine Bertrand, Céline Henry, Vivienne Gianinazzi-Pearson, Eliane Dumas-Gaudot, Samira Aschi-Smiti. Arbuscular mycorrhizal symbiosis elicits shoot proteome changes that are modified during cadmium stress alleviation in Medicago truncatula.
BMC plant biology.
2011 May; 11(?):75. doi:
10.1186/1471-2229-11-75
. [PMID: 21545723] - Jenny Sandström, Peter Heiduschka, Susanne C Beck, Ulrike Philippar, Matthias W Seeliger, Ulrich Schraermeyer, Alfred Nordheim. Degeneration of the mouse retina upon dysregulated activity of serum response factor.
Molecular vision.
2011 Apr; 17(?):1110-27. doi:
. [PMID: 21552476]
- Hong Lin, Binghai Lou, Jonathan M Glynn, Harshavardhan Doddapaneni, Edwin L Civerolo, Chuanwu Chen, Yongping Duan, Lijuan Zhou, Cheryl M Vahling. The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.
PloS one.
2011 Apr; 6(4):e19135. doi:
10.1371/journal.pone.0019135
. [PMID: 21552483] - Roman G Bayer, Simon Stael, Edina Csaszar, Markus Teige. Mining the soluble chloroplast proteome by affinity chromatography.
Proteomics.
2011 Apr; 11(7):1287-99. doi:
10.1002/pmic.201000495
. [PMID: 21365755] - Iris Finkemeier, Miriam Laxa, Laurent Miguet, Andrew J M Howden, Lee J Sweetlove. Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.
Plant physiology.
2011 Apr; 155(4):1779-90. doi:
10.1104/pp.110.171595
. [PMID: 21311031] - Takeo Sakurai, Akio Kimura, Megumi Yamada, Akihiro Koumura, Yuichi Hayashi, Yuji Tanaka, Isao Hozumi, Takashi Inuzuka. Identification of antibodies as biological markers in serum from multiple sclerosis patients by immunoproteomic approach.
Journal of neuroimmunology.
2011 Apr; 233(1-2):175-80. doi:
10.1016/j.jneuroim.2010.11.003
. [PMID: 21131059] - Jeffrey J Dunmire, Rachida Bouhenni, Michael L Hart, Bassam T Wakim, Anthony M Chomyk, Sarah E Scott, Hiroshi Nakamura, Deepak P Edward. Novel serum proteomic signatures in a non-human primate model of retinal injury.
Molecular vision.
2011 Mar; 17(?):779-91. doi:
NULL
. [PMID: 21527995] - Yasuhiro Yamamoto, Kenkichi Takase, Junji Kishino, Megumi Fujita, Noboru Okamura, Toshiyuki Sakaeda, Masafumi Fujimoto, Tatsurou Yagami. Proteomic identification of protein targets for 15-deoxy-Δ(12,14)-prostaglandin J2 in neuronal plasma membrane.
PloS one.
2011 Mar; 6(3):e17552. doi:
10.1371/journal.pone.0017552
. [PMID: 21445266] - Aliccia Bollig-Fischer, T Gregory Dewey, Stephen P Ethier. Oncogene activation induces metabolic transformation resulting in insulin-independence in human breast cancer cells.
PloS one.
2011 Mar; 6(3):e17959. doi:
10.1371/journal.pone.0017959
. [PMID: 21437235] - Johannes Thiel, Hardy Rolletschek, Svetlana Friedel, John E Lunn, Thuy H Nguyen, Regina Feil, Henning Tschiersch, Martin Müller, Ljudmilla Borisjuk. Seed-specific elevation of non-symbiotic hemoglobin AtHb1: beneficial effects and underlying molecular networks in Arabidopsis thaliana.
BMC plant biology.
2011 Mar; 11(?):48. doi:
10.1186/1471-2229-11-48
. [PMID: 21406103] - Zhongzan Cao, Zongxi Han, Yuhao Shao, Heyuan Geng, Xiangang Kong, Shengwang Liu. Proteomic analysis of chicken embryonic trachea and kidney tissues after infection in ovo by avian infectious bronchitis coronavirus.
Proteome science.
2011 Mar; 9(?):11. doi:
10.1186/1477-5956-9-11
. [PMID: 21385394] - Lisa McGinley, Jill McMahon, Padraig Strappe, Frank Barry, Mary Murphy, Daniel O'Toole, Timothy O'Brien. Lentiviral vector mediated modification of mesenchymal stem cells & enhanced survival in an in vitro model of ischaemia.
Stem cell research & therapy.
2011 Mar; 2(2):12. doi:
10.1186/scrt53
. [PMID: 21385372] - Lu Zhou, Saleem A Bokhari, Chun-Juan Dong, Jin-Yuan Liu. Comparative proteomics analysis of the root apoplasts of rice seedlings in response to hydrogen peroxide.
PloS one.
2011 Feb; 6(2):e16723. doi:
10.1371/journal.pone.0016723
. [PMID: 21347307] - Darko Cerne, Irma Stern, Igor Kranjec, Janja Marc. Optimisation of methods for quantifying plasma mRNA levels from genes responsible for coronary artery plaque development and destabilization.
Medicinski glasnik : official publication of the Medical Association of Zenica-Doboj Canton, Bosnia and Herzegovina.
2011 Feb; 8(1):90-6. doi:
NULL
. [PMID: 21263404] - L Tabatabaie, L W J Klomp, M E Rubio-Gozalbo, L J M Spaapen, A A M Haagen, L Dorland, T J de Koning. Expanding the clinical spectrum of 3-phosphoglycerate dehydrogenase deficiency.
Journal of inherited metabolic disease.
2011 Feb; 34(1):181-4. doi:
10.1007/s10545-010-9249-5
. [PMID: 21113737] - Chris Lee, Demosthenis Chronis, Charlotte Kenning, Benjamin Peret, Tarek Hewezi, Eric L Davis, Thomas J Baum, Richard Hussey, Malcolm Bennett, Melissa G Mitchum. The novel cyst nematode effector protein 19C07 interacts with the Arabidopsis auxin influx transporter LAX3 to control feeding site development.
Plant physiology.
2011 Feb; 155(2):866-80. doi:
10.1104/pp.110.167197
. [PMID: 21156858] - Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski, Fabian J Theis. Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
BMC systems biology.
2011 Jan; 5(?):21. doi:
10.1186/1752-0509-5-21
. [PMID: 21281499] - Chao Wang, Xiaolei Fan, Guangce Wang, Jianfeng Niu, Baicheng Zhou. Differential expression of rubisco in sporophytes and gametophytes of some marine macroalgae.
PloS one.
2011 Jan; 6(1):e16351. doi:
10.1371/journal.pone.0016351
. [PMID: 21283730] - Elizabeth A Mazzio, Fran Close, Karam F A Soliman. The biochemical and cellular basis for nutraceutical strategies to attenuate neurodegeneration in Parkinson's disease.
International journal of molecular sciences.
2011 Jan; 12(1):506-69. doi:
10.3390/ijms12010506
. [PMID: 21340000] - P Pérez, G Rabnecz, Z Laufer, D Gutiérrez, Z Tuba, R Martínez-Carrasco. Restoration of photosystem II photochemistry and carbon assimilation and related changes in chlorophyll and protein contents during the rehydration of desiccated Xerophyta scabrida leaves.
Journal of experimental botany.
2011 Jan; 62(3):895-905. doi:
10.1093/jxb/erq317
. [PMID: 20956360] - Lei Wang, Wei Chen, Yun Feng, Yan Ren, Zhennan Gu, Haiqin Chen, Hongchao Wang, Michael J Thomas, Baixi Zhang, Isabelle M Berquin, Yang Li, Jiansheng Wu, Huanxin Zhang, Yuanda Song, Xiang Liu, James S Norris, Suriguga Wang, Peng Du, Junguo Shen, Na Wang, Yanlin Yang, Wei Wang, Lu Feng, Colin Ratledge, Hao Zhang, Yong Q Chen. Genome characterization of the oleaginous fungus Mortierella alpina.
PloS one.
2011; 6(12):e28319. doi:
10.1371/journal.pone.0028319
. [PMID: 22174787] - Meng Qi, Pan Wang, Nicholas O'Toole, Perry S Barboza, Emilio Ungerfeld, Mary Beth Leigh, L Brent Selinger, Greg Butler, Adrian Tsang, Tim A McAllister, Robert J Forster. Snapshot of the eukaryotic gene expression in muskoxen rumen--a metatranscriptomic approach.
PloS one.
2011; 6(5):e20521. doi:
10.1371/journal.pone.0020521
. [PMID: 21655220]