Ribose 1-phosphate (BioDeep_00000001742)

 

Secondary id: BioDeep_00001868867

human metabolite PANOMIX_OTCML-2023 Endogenous natural product PANOMIX_OTCML-2025


代谢物信息卡片


{[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}phosphonic acid

  化学式: C5H11O8P (230.0192)
中文名称:
  谱图信息: 最多检出来源 Homo sapiens(plant) 4.5%

分子结构信息

SMILES: C(C1C(C(C(O1)OP(=O)(O)O)O)O)O
InChI: InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)

描述信息

Ribose 1-phosphate, also known as alpha-D-ribofuranose 1-phosphate or 1-O-phosphono-A-D-ribofuranose, is a member of the class of compounds known as pentoses. Pentoses are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Ribose 1-phosphate is soluble (in water) and a moderately acidic compound (based on its pKa). Ribose 1-phosphate can be found in a number of food items such as cassava, capers, pine nut, and wheat, which makes ribose 1-phosphate a potential biomarker for the consumption of these food products. Ribose 1-phosphate can be found primarily in cellular cytoplasm. Ribose 1-phosphate exists in all living species, ranging from bacteria to humans. In humans, ribose 1-phosphate is involved in several metabolic pathways, some of which include pyrimidine metabolism, nicotinate and nicotinamide metabolism, pentose phosphate pathway, and azathioprine action pathway. Ribose 1-phosphate is also involved in several metabolic disorders, some of which include beta ureidopropionase deficiency, gout or kelley-seegmiller syndrome, transaldolase deficiency, and UMP synthase deficiency (orotic aciduria).
Ribose 1-phosphate is an intermediate in the metabolism of Pyrimidine and the metabolism of Nicotinate and nicotinamide. It is a substrate for Uridine phosphorylase 2, Phosphoglucomutase, Purine nucleoside phosphorylase and Uridine phosphorylase 1. Ribose 1-phosphate can be formed from guanosine through the action of purine nucleoside phosphorylase. Ribose 1-phosphate can also act as a ribose donor in the synthesis of xanthosine as catalyzed by the same enzyme (purine nucleoside phosphorylase). The presence of guanase, which irreversibly converts guanine to xanthine, affects the overall process of guanosine transformation. As a result of this purine pathway, guanosine is converted into xanthosine, thus overcoming the lack of guanosine deaminase in mammals. The activated ribose moiety in Ribose 1-phosphate which stems from the catabolism of purine nucleosides can be transferred to uracil and, in the presence of ATP, used for the synthesis of pyrimidine nucleotides; therefore, purine nucleosides can act as ribose donors for the salvage of pyrimidine bases. (PMID: 9133638).
COVID info from COVID-19 Disease Map
Corona-virus
KEIO_ID R017
Coronavirus
SARS-CoV-2
COVID-19
SARS-CoV
COVID19
SARS2
SARS

同义名列表

32 个代谢物同义名

{[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}phosphonic acid; alpha-D-Ribofuranose 1-(dihydrogen phosphate); a-D-Ribofuranose 1-(dihydrogen phosphate); D-Ribofuranose 1-(dihydrogen phosphate); Ribose 1-phosphate, (alpha-D)-isomer; Ribose 1-phosphate, (beta-D)-isomer; 1-O-Phosphono-alpha-D-ribofuranose; alpha-D-Ribofuranose 1-phosphate; 1-Phospho-alpha-D-ribofuranose; 1-O-Phosphono-a-D-ribofuranose; 1-O-Phosphono-α-D-ribofuranose; 1-O-Phosphono-D-ribofuranose; D-Ribofuranose 1-phosphate; 1-Phospho-α-D-ribofuranose; D-Ribose 1-phosphoric acid; alpha-D-Ribose 1-phosphate; 1-Phospho-a-D-ribofuranose; Ribose 1-phosphoric acid; Ribofuranose 1-phosphate; α-D-ribose-1-phosphate; a-D-Ribose 1-phosphate; D-Ribose-1-phosphate; D-Ribose 1-phosphate; Ribose 1-phosphate; Ribose-1-phosphate; SCHEMBL17554435; D-Ribose-1P; [(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl] dihydrogen phosphate; alpha-D-ribose-1-phosphate; R1P; RIBOSE-1-PHOSPHATE; 1-O-phosphono-alpha-D-ribose; 1-O-phosphono-D-ribose; 1-O-phosphono-ribose; YXJDFQJKERBOBM-TXICZTDVSA-N



数据库引用编号

25 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome()

BioCyc(8)

PlantCyc()

代谢反应

109 个相关的代谢反应过程信息。

Reactome()

BioCyc(13)

WikiPathways()

Plant Reactome(3)

INOH()

PlantCyc()

COVID-19 Disease Map(1)

PathBank(92)

PharmGKB()

8 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 13 ADA, APRT, DERA, EMP2, MTAP, NT5C2, PFDN5, PGM1, PGM2, PNP, RBKS, UPP2, XDH
Peripheral membrane protein 1 ADA
Endoplasmic reticulum membrane 1 TKT
Nucleus 7 DERA, EMP2, MTAP, PAX7, PFDN5, PNKD, RBKS
cytosol 17 ADA, APRT, DERA, GDA, MTAP, NT5C2, PFDN5, PGM1, PGM2, PGM3, PNP, RBKS, TKT, TYMP, UPP1, UPP2, XDH
nuclear body 1 TKT
nucleoplasm 5 APRT, DERA, MTAP, TKT, UPP1
Cell membrane 3 ADA, EMP2, TKT
Cytoplasmic granule 1 DERA
Multi-pass membrane protein 2 EMP2, GDA
Golgi apparatus membrane 1 EMP2
cell junction 1 ADA
cell surface 2 ADA, EMP2
Golgi apparatus 1 EMP2
Golgi membrane 1 EMP2
mitochondrial inner membrane 1 GDA
Cytoplasm, cytosol 2 NT5C2, PGM2
Lysosome 1 ADA
plasma membrane 3 ADA, EMP2, TKT
Membrane 3 ADA, EMP2, PNKD
apical plasma membrane 2 EMP2, TKT
extracellular exosome 6 APRT, MTAP, PGM1, PGM2, PNP, TKT
extracellular space 2 PNP, XDH
perinuclear region of cytoplasm 1 EMP2
mitochondrion 2 GDA, PNKD
Single-pass type I membrane protein 1 TKT
Secreted 1 PNP
extracellular region 5 APRT, DERA, PGM1, PGM2, PNP
Extracellular side 1 ADA
Cytoplasmic vesicle lumen 1 ADA
anchoring junction 1 ADA
external side of plasma membrane 1 ADA
actin cytoskeleton 1 TKT
cytoplasmic vesicle 1 EMP2
apical part of cell 1 EMP2
vesicle 1 TKT
Apical cell membrane 1 EMP2
Cytoplasm, perinuclear region 1 EMP2
Mitochondrion inner membrane 1 GDA
Membrane raft 1 EMP2
focal adhesion 1 TKT
Peroxisome 2 TKT, XDH
sarcoplasmic reticulum 1 XDH
receptor complex 1 TKT
chromatin 1 PAX7
intermediate filament cytoskeleton 1 PFDN5
ficolin-1-rich granule lumen 4 DERA, PGM1, PGM2, PNP
secretory granule lumen 4 APRT, DERA, PGM2, PNP
tertiary granule lumen 1 PGM1
prefoldin complex 1 PFDN5
presynaptic cytosol 1 PNKD
type III intermediate filament 1 UPP2


文献列表

  • Cancan Yang, Jing Li, Zhenling Huang, Xuefa Zhang, Xiaolei Gao, Chunyuang Zhu, Paul F Morris, XiuGuo Zhang. Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici. Scientific reports. 2020 06; 10(1):9051. doi: 10.1038/s41598-020-65935-9. [PMID: 32493959]
  • R Leoncini, D Vannoni, E Marinello, R Pagani. Ribose 1-P-dependent ADP and ATP formation in rat liver. Advances in experimental medicine and biology. 1994; 370(?):531-5. doi: 10.1007/978-1-4615-2584-4_112. [PMID: 7660964]


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