Guanosine diphosphate (BioDeep_00000001615)

 

Secondary id: BioDeep_00000405424, BioDeep_00000413232, BioDeep_00001868316

natural product human metabolite PANOMIX_OTCML-2023 Endogenous blood metabolite


代谢物信息卡片


[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid

化学式: C10H15N5O11P2 (443.02433)
中文名称: 鸟苷-5-二磷酸, 二磷酸鸟苷
谱图信息: 最多检出来源 Viridiplantae(plant) 0.46%

Reviewed

Last reviewed on 2024-07-23.

Cite this Page

Guanosine diphosphate. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China. https://query.biodeep.cn/s/guanosine_diphosphate (retrieved 2024-09-17) (BioDeep RN: BioDeep_00000001615). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

分子结构信息

SMILES: C([C@@H]1[C@H]([C@H]([C@H](n2cnc3c2nc(N)[nH]c3=O)O1)O)O)OP(=O)(O)OP(=O)(O)O
InChI: InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)

描述信息

Guanosine diphosphate, also known as gdp or 5-diphosphate, guanosine, is a member of the class of compounds known as purine ribonucleoside diphosphates. Purine ribonucleoside diphosphates are purine ribobucleotides with diphosphate group linked to the ribose moiety. Guanosine diphosphate is slightly soluble (in water) and a moderately acidic compound (based on its pKa). Guanosine diphosphate can be found in a number of food items such as strawberry, onion-family vegetables, walnut, and scarlet bean, which makes guanosine diphosphate a potential biomarker for the consumption of these food products. Guanosine diphosphate can be found primarily in blood and cerebrospinal fluid (CSF). Guanosine diphosphate exists in all living species, ranging from bacteria to humans. In humans, guanosine diphosphate is involved in several metabolic pathways, some of which include betahistine h1-antihistamine action, fexofenadine h1-antihistamine action, clocinizine h1-antihistamine action, and bepotastine h1-antihistamine action. Guanosine diphosphate is also involved in several metabolic disorders, some of which include adenine phosphoribosyltransferase deficiency (APRT), canavan disease, gout or kelley-seegmiller syndrome, and pyruvate dehydrogenase complex deficiency. Moreover, guanosine diphosphate is found to be associated with epilepsy, subarachnoid hemorrhage, neuroinfection, and stroke. Guanosine diphosphate, abbreviated GDP, is a nucleoside diphosphate. It is an ester of pyrophosphoric acid with the nucleoside guanosine. GDP consists of the pyrophosphate group, the pentose sugar ribose, and the nucleobase guanine .
Guanosine diphosphate, also known as 5-GDP or 5-diphosphate, guanosine, belongs to the class of organic compounds known as purine ribonucleoside diphosphates. These are purine ribobucleotides with diphosphate group linked to the ribose moiety. Guanosine diphosphate exists in all living species, ranging from bacteria to humans. In humans, guanosine diphosphate is involved in intracellular signalling through adenosine receptor A2B and adenosine. Outside of the human body, Guanosine diphosphate has been detected, but not quantified in several different foods, such as devilfish, java plums, green beans, almonds, and orange mints. Guanosine diphosphate is a purine ribonucleoside 5-diphosphate resulting from the formal condensation of the hydroxy group at the 5 position of guanosine with pyrophosphoric acid.
COVID info from COVID-19 Disease Map, PDB, Protein Data Bank
Corona-virus
Coronavirus
SARS-CoV-2
COVID-19
SARS-CoV
COVID19
SARS2
SARS

同义名列表

26 个代谢物同义名

[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid; {[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy(hydroxy)phosphoryl}oxyphosphonic acid; 5-guanylate diphosphate (guanosine diphosphate); Guanosine mono(trihydrogen diphosphate); Guanosine 5-(trihydrogen pyrophosphate); Diphosphate, guanosine 5-trihydrogen; 5-Trihydrogen diphosphate, guanosine; Guanosine 5-trihydrogen diphosphate; Guanosine 5 trihydrogen diphosphate; Guanosine-5-diphosphate sodium salt; Guanosine 5-diphosphoric acid; Guanosine diphosphoric acid; Guanosine 5-pyrophosphate; 5-Diphosphate, guanosine; Guanosine 5-diphosphate; Guanosine pyrophosphate; Guanosine 5 diphosphate; Guanosine-5-diphosphate; Diphosphate, guanosine; guanosine diphos-phate; Guanosine-diphosphate; Guanosine diphosphate; 5-GDP; PpG; GDP; Guanosine diphosphate(GDP)



数据库引用编号

22 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(29)

BioCyc(10)

PlantCyc(9)

代谢反应

3463 个相关的代谢反应过程信息。

Reactome(1067)

BioCyc(20)

WikiPathways(1)

Plant Reactome(965)

INOH(47)

PlantCyc(1036)

COVID-19 Disease Map(2)

PathBank(325)

PharmGKB(0)

7 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。



文献列表

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  • Giang Pham, Dong-Min Shin, Yoon Kim, Soo-Hwan Kim. Ran-GTP/-GDP-dependent nuclear accumulation of NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 and TGACG-BINDING FACTOR2 controls salicylic acid-induced leaf senescence. Plant physiology. 2022 06; 189(3):1774-1793. doi: 10.1093/plphys/kiac164. [PMID: 35417014]
  • Yuan Chen, Peng Shu, Ruochen Wang, Xiaofei Du, Yue Xie, Kui Du, Heng Deng, Mingzhang Li, Yang Zhang, Don Grierson, Mingchun Liu. Ethylene response factor AcERF91 affects ascorbate metabolism via regulation of GDP-galactose phosphorylase encoding gene (AcGGP3) in kiwifruit. Plant science : an international journal of experimental plant biology. 2021 Dec; 313(?):111063. doi: 10.1016/j.plantsci.2021.111063. [PMID: 34763857]
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