Glycodeoxycholate (BioDeep_00000606592)

Main id: BioDeep_00000001651

 

PANOMIX_OTCML-2023 Bile acids


代谢物信息卡片


N-(3alpha,12alpha-dihydroxy-5beta-cholan-24-oyl)glycine

化学式: C26H43NO5 (449.3141)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C1C[C@@H](O)C[C@@]2([H])CC[C@]3([H])[C@@]([H])([C@]21C)C[C@H](O)[C@]1(C)[C@]([C@H](C)CCC(=O)NCC(=O)O)([H])CC[C@]13[H]
InChI: InChI=1S/C26H43NO5/c1-15(4-9-23(30)27-14-24(31)32)19-7-8-20-18-6-5-16-12-17(28)10-11-25(16,2)21(18)13-22(29)26(19,20)3/h15-22,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32)/t15-,16-,17-,18+,19-,20+,21+,22+,25+,26-/m1/s1

描述信息

D005765 - Gastrointestinal Agents > D001647 - Bile Acids and Salts
D005765 - Gastrointestinal Agents > D002793 - Cholic Acids
D013501 - Surface-Active Agents > D003902 - Detergents
A bile acid glycine conjugate of deoxycholic acid.
Glycodeoxycholic Acid is an endogenous metabolite.
Glycodeoxycholic Acid is an endogenous metabolite.

同义名列表

9 个代谢物同义名

N-(3alpha,12alpha-dihydroxy-5beta-cholan-24-oyl)glycine; 3alpha,12alpha-Dihydroxy-5beta-cholan-24-oylglycine; deoxycholic acid glycine conjugate; glycodesoxycholic acid; Glycodeoxycholic acid; deoxycholylglycine; Glycodeoxycholate; ST 24:1;O4;G; Glycodeoxycholate



数据库引用编号

15 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

2 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 6 CPOX, CYP3A4, FGF19, GNAT3, GPBAR1, S1PR2
Endoplasmic reticulum membrane 2 CYP3A4, CYP7A1
Nucleus 2 MPO, NR1H4
cytosol 3 CPOX, GPT, LIPE
nucleoplasm 2 MPO, NR1H4
RNA polymerase II transcription regulator complex 1 NR1H4
Cell membrane 6 GPBAR1, LIPE, SLCO1B1, SLCO1B3, SLCO2B1, TNF
Multi-pass membrane protein 4 GPBAR1, SLCO1B1, SLCO1B3, SLCO2B1
cell surface 1 TNF
glutamatergic synapse 1 S1PR2
Golgi membrane 1 INS
neuronal cell body 1 TNF
postsynapse 1 S1PR2
Cytoplasm, cytosol 1 LIPE
Lysosome 1 MPO
Presynapse 1 S1PR2
acrosomal vesicle 1 GNAT3
plasma membrane 7 GNAT3, GPBAR1, S1PR2, SLCO1B1, SLCO1B3, SLCO2B1, TNF
Membrane 7 CPOX, CYP3A4, LIPE, SLCO1B1, SLCO1B3, SLCO2B1, TMPRSS15
apical plasma membrane 2 GNAT3, SLCO2B1
axon 1 CCK
basolateral plasma membrane 3 SLCO1B1, SLCO1B3, SLCO2B1
brush border 1 TMPRSS15
caveola 1 LIPE
extracellular exosome 2 GPT, MPO
extracellular space 7 CCK, FGF19, IL6, INS, MPO, SCT, TNF
mitochondrion 1 CPOX
protein-containing complex 1 GNAT3
intracellular membrane-bounded organelle 3 CYP3A4, CYP7A1, MPO
Microsome membrane 2 CYP3A4, CYP7A1
Secreted 3 CCK, IL6, INS
extracellular region 7 CCK, FGF19, IL6, INS, MPO, SCT, TNF
Single-pass membrane protein 1 CYP7A1
photoreceptor inner segment 1 GNAT3
photoreceptor outer segment 1 GNAT3
external side of plasma membrane 1 TNF
recycling endosome 1 TNF
Single-pass type II membrane protein 2 TMPRSS15, TNF
Apical cell membrane 1 SLCO2B1
Membrane raft 1 TNF
mitochondrial intermembrane space 1 CPOX
secretory granule 1 MPO
axoneme 1 GNAT3
receptor complex 2 GPBAR1, NR1H4
chromatin 1 NR1H4
phagocytic cup 1 TNF
[Isoform 3]: Nucleus 1 NR1H4
Basolateral cell membrane 3 SLCO1B1, SLCO1B3, SLCO2B1
endosome lumen 1 INS
Lipid droplet 1 LIPE
Membrane, caveola 1 LIPE
heterotrimeric G-protein complex 1 GNAT3
euchromatin 1 NR1H4
basal plasma membrane 3 SLCO1B1, SLCO1B3, SLCO2B1
azurophil granule 1 MPO
secretory granule lumen 1 INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 2 IL6, INS
transport vesicle 1 INS
azurophil granule lumen 1 MPO
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
phagocytic vesicle lumen 1 MPO
[Isoform 2]: Nucleus 1 NR1H4
[Isoform 1]: Nucleus 1 NR1H4
Basal cell membrane 3 SLCO1B1, SLCO1B3, SLCO2B1
[Isoform 4]: Nucleus 1 NR1H4
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
interleukin-6 receptor complex 1 IL6
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表

  • Cuitong Wang, Bin Cheng, Wei Wei, Lanlan Gui, Wushuang Zeng, Yutong Wang, Yixuan Wang, Qi Chen, Liang Xu, Jia Miao, Ke Lan. Comparison of 1Beta- and 5Beta-hydroxylation of Deoxycholate and Glycodeoxycholate as In Vitro Index Reactions for Cytochrome P450 3A Activities. Drug metabolism and disposition: the biological fate of chemicals. 2024 Jan; 52(2):126-134. doi: 10.1124/dmd.123.001513. [PMID: 38050044]
  • Achmad Fauzi, Suhendro, Marcellus Simadibrata, Abdul Azis Rani, Dondin Sajuthi, Permanawati, Rosvitha Amanda, Dadang Makmun. Role of glycodeoxycholic acid to induce acute pancreatitis in Macaca nemestrina. Journal of medical primatology. 2022 06; 51(3):134-142. doi: 10.1111/jmp.12577. [PMID: 35306662]
  • Sławomira Drzymała-Czyż, Krzysztof Dziedzic, Artur Szwengiel, Patrycja Krzyżanowska-Jankowska, Jan K Nowak, Agata Nowicka, Raisa Aringazina, Sylwia Drzymała, Nataliya Kashirskaya, Jarosław Walkowiak. Serum bile acids in cystic fibrosis patients - glycodeoxycholic acid as a potential marker of liver disease. Digestive and liver disease : official journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver. 2022 Jan; 54(1):111-117. doi: 10.1016/j.dld.2021.06.034. [PMID: 34305015]
  • Phylyne van Rijs, Vincenzo Fogliano. Roasting carob flour decreases the capacity to bind glycoconjugates of bile acids. Food & function. 2020 Jul; 11(7):5924-5932. doi: 10.1039/d0fo01158d. [PMID: 32638775]
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  • Habtom W Ressom, Jun Feng Xiao, Leepika Tuli, Rency S Varghese, Bin Zhou, Tsung-Heng Tsai, Mohammad R Nezami Ranjbar, Yi Zhao, Jinlian Wang, Cristina Di Poto, Amrita K Cheema, Mahlet G Tadesse, Radoslav Goldman, Kirti Shetty. Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis. Analytica chimica acta. 2012 Sep; 743(?):90-100. doi: 10.1016/j.aca.2012.07.013. [PMID: 22882828]
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  • Elaine Studer, Xiqiao Zhou, Renping Zhao, Yun Wang, Kazuaki Takabe, Masayuki Nagahashi, William M Pandak, Paul Dent, Sarah Spiegel, Ruihua Shi, Weiren Xu, Xuyuan Liu, Pat Bohdan, Luyong Zhang, Huiping Zhou, Phillip B Hylemon. Conjugated bile acids activate the sphingosine-1-phosphate receptor 2 in primary rodent hepatocytes. Hepatology (Baltimore, Md.). 2012 Jan; 55(1):267-76. doi: 10.1002/hep.24681. [PMID: 21932398]
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  • Andrew D Patterson, Olivier Maurhofer, Diren Beyoglu, Christian Lanz, Kristopher W Krausz, Thomas Pabst, Frank J Gonzalez, Jean-François Dufour, Jeffrey R Idle. Aberrant lipid metabolism in hepatocellular carcinoma revealed by plasma metabolomics and lipid profiling. Cancer research. 2011 Nov; 71(21):6590-600. doi: 10.1158/0008-5472.can-11-0885. [PMID: 21900402]
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  • Jocelyn Trottier, Andrzej Białek, Patrick Caron, Robert J Straka, Piotr Milkiewicz, Olivier Barbier. Profiling circulating and urinary bile acids in patients with biliary obstruction before and after biliary stenting. PloS one. 2011; 6(7):e22094. doi: 10.1371/journal.pone.0022094. [PMID: 21760958]
  • Thilo Hackert, Stefan Tudor, Klaus Felix, Dmitry Dovshanskiy, Werner Hartwig, Wolfgang A Simon, Jens Werner. Effects of pantoprazole in experimental acute pancreatitis. Life sciences. 2010 Oct; 87(17-18):551-7. doi: 10.1016/j.lfs.2010.09.008. [PMID: 20851132]
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  • Serdar Turkyilmaz, Etem Alhan, Cengiz Ercin, Birgul Kural Vanizor, Nese Kaklikkaya, Burhan Ates, Selim Erdogan, Serdar Topaloglu. Effects of caffeic acid phenethyl ester on pancreatitis in rats. The Journal of surgical research. 2008 Mar; 145(1):19-24. doi: 10.1016/j.jss.2007.04.019. [PMID: 18028950]
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