CHEBI:30918 (BioDeep_00000867281)

Main id: BioDeep_00000004277

 

BioNovoGene_Lab2019


代谢物信息卡片


(4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid

化学式: C7H8O5 (172.0372)
中文名称: (-)-3-去氢莽草酸
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C1C(C(C(=O)C=C1C(=O)O)O)O
InChI: InChI=1S/C7H8O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,5-6,9-10H,2H2,(H,11,12)/t5-,6-/m1/s1



数据库引用编号

12 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 5 EGFR, GCK, LDHA, SCYL1, TNK1
Peripheral membrane protein 4 GCK, SDHA, SDHB, TNK1
Endosome membrane 1 EGFR
Endoplasmic reticulum membrane 3 EGFR, SLC35B1, TKT
Nucleus 4 EGFR, GCK, LDHA, SCYL1
cytosol 4 GCK, LDHA, SCYL1, TKT
mitochondrial membrane 1 SDHB
nuclear body 1 TKT
centrosome 1 SCYL1
nucleoplasm 3 GCK, SDHB, TKT
Cell membrane 2 EGFR, TKT
ruffle membrane 1 EGFR
Early endosome membrane 1 EGFR
Multi-pass membrane protein 3 SDHC, SDHD, SLC35B1
Golgi apparatus membrane 1 GCK
cell junction 1 EGFR
cell surface 1 EGFR
glutamatergic synapse 1 EGFR
Golgi apparatus 1 SCYL1
Golgi membrane 3 EGFR, GCK, SLC35B1
mitochondrial inner membrane 4 SDHA, SDHB, SDHC, SDHD
neuronal cell body 1 SERPINI1
endosome 1 EGFR
plasma membrane 4 EGFR, SDHB, TKT, TNK1
Membrane 6 EGFR, LDHA, SCYL1, SDHC, SLC35B1, TNK1
apical plasma membrane 2 EGFR, TKT
basolateral plasma membrane 2 EGFR, GCK
extracellular exosome 4 LCN2, LDHA, SERPINI1, TKT
extracellular space 3 EGFR, LCN2, SERPINI1
perinuclear region of cytoplasm 1 EGFR
mitochondrion 6 GCK, LDHA, SDHA, SDHB, SDHC, SDHD
protein-containing complex 1 EGFR
intracellular membrane-bounded organelle 1 SLC35B1
Single-pass type I membrane protein 2 EGFR, TKT
Secreted 2 LCN2, SERPINI1
extracellular region 2 GALP, LCN2
mitochondrial matrix 2 SDHA, SDHB
Cytoplasmic vesicle lumen 2 LCN2, SERPINI1
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 1 SCYL1
nuclear membrane 1 EGFR
actin cytoskeleton 1 TKT
perikaryon 1 SERPINI1
nucleolus 1 SDHA
vesicle 1 TKT
Mitochondrion inner membrane 4 SDHA, SDHB, SDHC, SDHD
Matrix side 2 SDHA, SDHB
Membrane raft 1 EGFR
focal adhesion 2 EGFR, TKT
cis-Golgi network 1 SCYL1
Peroxisome 1 TKT
intracellular vesicle 1 EGFR
receptor complex 2 EGFR, TKT
Basolateral cell membrane 1 GCK
basal plasma membrane 1 EGFR
synaptic membrane 1 EGFR
secretory granule lumen 1 SERPINI1
specific granule lumen 1 LCN2
mitochondrial envelope 1 SDHD
respiratory chain complex II (succinate dehydrogenase) 4 SDHA, SDHB, SDHC, SDHD
COPI vesicle coat 1 SCYL1
clathrin-coated endocytic vesicle membrane 1 EGFR
endoplasmic reticulum-Golgi intermediate compartment 1 SCYL1
Golgi apparatus, cis-Golgi network 1 SCYL1
oxidoreductase complex 1 LDHA
multivesicular body, internal vesicle lumen 1 EGFR
Shc-EGFR complex 1 EGFR
Cytoplasmic vesicle, secretory vesicle lumen 1 SERPINI1
Cytoplasmic granule lumen 1 LCN2
[Isoform 6]: Nucleus 1 SCYL1


文献列表

  • James Peek, Dinesh Christendat. The shikimate dehydrogenase family: functional diversity within a conserved structural and mechanistic framework. Archives of biochemistry and biophysics. 2015 Jan; 566(?):85-99. doi: 10.1016/j.abb.2014.12.006. [PMID: 25524738]
  • Yu-Chen Chang, Erick A Almy, Gina A Blamer, J Ian Gray, John W Frost, Gale M Strasburg. Antioxidant activity of 3-dehydroshikimic acid in liposomes, emulsions, and bulk oil. Journal of agricultural and food chemistry. 2003 Apr; 51(9):2753-7. doi: 10.1021/jf025970f. [PMID: 12696968]
  • . . . . doi: . [PMID: 21279669]