bacteriopheophytin (BioDeep_00000005957)

   


代谢物信息卡片


Bacteriopheophytin; Bacteriopheophytin a

化学式: C55H76N4O6 (888.5765)
中文名称: 脱镁细菌叶绿素a
谱图信息: 最多检出来源 Macaca mulatta(otcml) 57.29%

分子结构信息

SMILES: CCC1C(C2=CC3=C(C(=C(N3)C=C4C(C(C(=N4)C5=C6C(=C(C(=CC1=N2)N6)C)C(=O)C5C(=O)OC)CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C)C(=O)C)C
InChI: InChI=1S/C55H76N4O6/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3/h25,27-32,34-35,39-40,51,57,59H,13-24,26H2,1-12H3/b33-25+,41-29?,42-27?,43-27?,44-28?,45-28?,46-29?,52-50?/t31-,32-,34-,35+,39-,40+,51-/m1/s1



数据库引用编号

13 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 3 BFSP2, CAT, UNK
Peripheral membrane protein 6 BFSP2, HSD17B6, MBP, NDUFA5, PLOD2, PLOD3
Endoplasmic reticulum membrane 3 PLOD1, PLOD2, PLOD3
Nucleus 3 ALAD, CBX8, MBP
cytosol 5 ALAD, CAT, LIPE, MBP, TGM1
trans-Golgi network 1 PLOD3
nucleoplasm 1 CBX8
Cell membrane 3 BFSP2, LIPE, PSCA
Lipid-anchor 1 TGM1
Cytoplasmic side 2 BFSP2, MBP
Early endosome membrane 1 HSD17B6
Multi-pass membrane protein 1 MT-CYB
Synapse 1 MBP
cell cortex 1 BFSP2
cell surface 1 MBP
Golgi apparatus 1 PLOD3
mitochondrial inner membrane 4 ATP5ME, FECH, MT-CYB, NDUFA5
neuronal cell body 1 MBP
Cytoplasm, cytosol 1 LIPE
plasma membrane 4 BFSP2, MBP, PSCA, TGM1
Membrane 5 CAT, CD163L1, LIPE, MT-CYB, TGM1
caveola 1 LIPE
extracellular exosome 8 ALAD, CAT, MBP, PLOD1, PLOD2, PLOD3, PSCA, TGM1
Lumenal side 3 HSD17B6, PLOD2, PLOD3
endoplasmic reticulum 4 HSD17B6, PLOD1, PLOD2, PLOD3
extracellular space 2 GH1, PLOD3
mitochondrion 6 ATP5ME, BPHL, CAT, FECH, MT-CYB, NDUFA5
protein-containing complex 2 CAT, MBP
intracellular membrane-bounded organelle 2 CAT, HSD17B6
Microsome membrane 1 HSD17B6
Single-pass type I membrane protein 1 CD163L1
Secreted 2 GH1, PLOD3
extracellular region 6 ALAD, CAT, CD163L1, GH1, MBP, PSCA
mitochondrial outer membrane 1 BPHL
mitochondrial matrix 2 CAT, FECH
external side of plasma membrane 1 CD163L1
Mitochondrion inner membrane 3 FECH, MT-CYB, NDUFA5
Matrix side 1 NDUFA5
heterochromatin 1 CBX8
Cytoplasm, cytoskeleton 1 BFSP2
focal adhesion 1 CAT
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
collagen-containing extracellular matrix 2 MBP, PLOD3
intermediate filament 1 BFSP2
chromatin 1 CBX8
cell periphery 1 MBP
cytoskeleton 1 BFSP2
[Isoform 3]: Nucleus 1 MBP
Secreted, extracellular space 1 PLOD3
Cytoplasm, cell cortex 1 BFSP2
Lipid-anchor, GPI-anchor 1 PSCA
[Isoform 2]: Cell membrane 1 CD163L1
[Isoform 3]: Secreted 1 CD163L1
endosome lumen 1 GH1
Lipid droplet 1 LIPE
Membrane, caveola 1 LIPE
Cornified envelope 1 TGM1
side of membrane 1 PSCA
myelin sheath 1 MBP
respiratory chain complex I 1 NDUFA5
ficolin-1-rich granule lumen 3 ALAD, CAT, MBP
secretory granule lumen 2 ALAD, CAT
endoplasmic reticulum lumen 1 PLOD3
PcG protein complex 1 CBX8
PRC1 complex 1 CBX8
transport vesicle 1 MBP
rough endoplasmic reticulum membrane 2 PLOD1, PLOD2
respiratory chain complex III 1 MT-CYB
[Isoform 1]: Cell membrane 1 CD163L1
Rough endoplasmic reticulum 2 PLOD2, PLOD3
proton-transporting ATP synthase complex 1 ATP5ME
proton-transporting ATP synthase complex, coupling factor F(o) 1 ATP5ME
growth hormone receptor complex 1 GH1
compact myelin 1 MBP
internode region of axon 1 MBP
catalase complex 1 CAT
catalytic complex 1 PLOD1
[Bone marrow proteoglycan]: Secreted 1 MBP
Myelin membrane 1 MBP


文献列表

  • Alexey A Zabelin, Vyacheslav B Kovalev, Anatoly Ya Shkuropatov. On the Mechanism of Selective Chemical Exchange of Bacteriopheophytins in the Reaction Centers of Rhodobacter sphaeroides R-26. Biochemistry. Biokhimiia. 2022 Oct; 87(10):1119-1129. doi: 10.1134/s0006297922100054. [PMID: 36273880]
  • Mikhail A Grin, Sergei I Tikhonov, Albina S Petrova, Victor A Pogorilyy, Аlexey N Noev, Victor V Tatarskiy, Dmitry B Shpakovsky, Elena R Milaeva, Elena V Kalinina, Nikolai N Chernov, Аlexander А Shtil, Andrey F Mironov, Andrey D Kaprin, Elena V Filonenko. New Derivatives of Bacteriopurpurin with Thiolated Au (I) Complexes: Dual Darkand Light Activated Antitumor Potency. Anti-cancer agents in medicinal chemistry. 2020; 20(1):49-58. doi: 10.2174/1871520619666190801102617. [PMID: 31368879]
  • Anatoli Ya Shkuropatov, Sieglinde Neerken, Hjalmar P Permentier, Rik de Wijn, Kristiane A Schmidt, Vladimir A Shuvalov, Thijs J Aartsma, Peter Gast, Arnold J Hoff. The effect of exchange of bacteriopheophytin a with plant pheophytin a on charge separation in Y(M210)W mutant reaction centers of Rhodobacter sphaeroides at low temperature. Biochimica et biophysica acta. 2003 Mar; 1557(1-3):1-12. doi: 10.1016/s0005-2728(02)00373-0. [PMID: 12615343]
  • V A Shuvalov, A G Yakovlev. Energy level of P+B- with respect to P* found from recombination fluorescence measurements in pheophytin-modified reaction centres. Membrane & cell biology. 1998; 12(5):563-9. doi: ". [PMID: 10379640]
  • Shkuropatov Aya, I I Proskuryakov, V A Shkuropatova, M G Zvereva, V A Shuvalov. Formation of charge separated state P+OA- and triplet state 3P at low temperature in Rhodobacter sphaeroides (R-26) reaction centers in which bacteriopheophytin a is replaced by plant pheophytin a. FEBS letters. 1994 Sep; 351(2):249-52. doi: 10.1016/0014-5793(94)00843-4. [PMID: 8082774]
  • Shkuropatov AYa, V A Shuvalov. Electron transfer in pheophytin a-modified reaction centers from Rhodobacter sphaeroides (R-26). FEBS letters. 1993 May; 322(2):168-72. doi: 10.1016/0014-5793(93)81561-d. [PMID: 8482386]