dTDP-D-glucose (BioDeep_00000004493)

 

Secondary id: BioDeep_00001868874

human metabolite Endogenous BioNovoGene_Lab2019


代谢物信息卡片


{[hydroxy({[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphoryl]oxy}({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid

化学式: C16H26N2O16P2 (564.0758)
中文名称: dTDP-葡萄糖
谱图信息: 最多检出来源 Viridiplantae(plant) 15.2%

分子结构信息

SMILES: CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)O)O
InChI: InChI=1S/C16H26N2O16P2/c1-6-3-18(16(25)17-14(6)24)10-2-7(20)9(31-10)5-30-35(26,27)34-36(28,29)33-15-13(23)12(22)11(21)8(4-19)32-15/h3,7-13,15,19-23H,2,4-5H2,1H3,(H,26,27)(H,28,29)(H,17,24,25)/t7-,8+,9+,10+,11+,12-,13+,15+/m0/s1

描述信息

Deoxythymidine diphosphate-glucose is an intermediate in the nucleotide sugar metabolism pathway (KEGG). It is a substrate for the enzyme dTDP-D-glucose 4,6-dehydratase which catalyzes the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-D-glucose + H2O.
Deoxythymidine diphosphate-glucose is an intermediate in the Nucleotide sugars metabolism pathway (KEGG) [HMDB]

同义名列表

41 个代谢物同义名

{[hydroxy({[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphoryl]oxy}({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid; {[hydroxy({[(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy}({[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphinic acid; Thymidine pyrophosphate alpha-D-glucopyranosyl ester; Thymidine 5-pyrophosphate alpha-D-glucosyl ester; Thymidine pyrophosphate α-D-glucopyranosyl ester; Thymidine 5’-pyrophosphate α-D-glucosyl ester; Thymidine 5-pyrophosphate α-D-glucosyl ester; 2Deoxy-thymidine-5-diphospho-alpha-D-glucose; 2Deoxy-thymidine-5-diphospho-a-D-glucose; 2Deoxy-thymidine-5-diphospho-α-D-glucose; Mono-alpha-delta-glucopyranosyl ester; Thymidine diphosphate alpha-D-glucose; Thymidine 5-diphosphate-delta-Glucose; Thymidine 5’-diphosphate-D-glucose; Deoxythymidine diphosphate-glucose; Thymidine 5-diphosphate-D-Glucose; Thymidine 5-diphosphate-D-glucose; Thymidine diphosphate α-D-glucose; Mono-alpha-D-glucopyranosyl ester; Thymidine 5’-diphosphoglucose; Mono-a-D-glucopyranosyl ester; Thymidine 5-diphosphoglucose; alpha-D-Glucose-1-TDP; dTDP-alpha-D-Glucose; dTDP-glucose dianion; TDP-alpha-D-glucose; dTDP-delta-Glucose; TDP-delta-Glucose; α-D-Glucose-1-TDP; dTDP-a-D-Glucose; dTDP-Α-D-glucose; TDP-α-D-glucose; dTDP-D-glucose; TDP-D-glucose; dtdp-glucose; DTDPglucose; TDP-glucose; TDP-Glc; TDPG; dTDP-glucose; dTDP-glucose



数据库引用编号

25 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

6 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(6)

PharmGKB(0)

2 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 9 ALKBH1, CAT, CMPK2, DTYMK, GYG1, HSD17B4, PPP1R8, PRKX, SGTA
Peripheral membrane protein 3 ACHE, CYP1B1, HSD17B6
Endoplasmic reticulum membrane 1 CYP1B1
Nucleus 8 ACHE, ALKBH1, DTYMK, GYG1, PPP1R8, PRKX, SGTA, UGDH
cytosol 8 CAT, DTYMK, GALE, GYG1, HSD17B4, MAT1A, SGTA, UGDH
nucleoplasm 5 ALKBH1, CMPK2, PPP1R8, PRKX, UGDH
Cell membrane 2 ACHE, TREH
Early endosome membrane 1 HSD17B6
Golgi apparatus membrane 1 GBGT1
Synapse 1 ACHE
cell surface 1 ACHE
Golgi apparatus 2 ACHE, GBGT1
Golgi membrane 1 GBGT1
lysosomal membrane 1 GAA
neuromuscular junction 1 ACHE
Lysosome 1 GAA
plasma membrane 3 ACHE, GAA, TREH
Membrane 9 ACHE, CAT, CYP1B1, GAA, GBGT1, GYG1, HSD17B4, SGTA, TREH
extracellular exosome 4 CAT, GAA, TREH, UGDH
Lysosome membrane 1 GAA
Lumenal side 1 HSD17B6
endoplasmic reticulum 2 ALKBH1, HSD17B6
extracellular space 1 ACHE
lysosomal lumen 2 GAA, GYG1
perinuclear region of cytoplasm 1 ACHE
mitochondrion 5 ALKBH1, CAT, CMPK2, CYP1B1, DTYMK
protein-containing complex 1 CAT
intracellular membrane-bounded organelle 5 CAT, CYP1B1, GAA, HSD17B4, HSD17B6
Microsome membrane 2 CYP1B1, HSD17B6
Secreted 2 ACHE, GAA
extracellular region 4 ACHE, CAT, GAA, GYG1
mitochondrial matrix 2 CAT, DTYMK
Extracellular side 1 ACHE
Single-pass type II membrane protein 1 GBGT1
vesicle 1 GBGT1
focal adhesion 1 CAT
Peroxisome 2 CAT, HSD17B4
basement membrane 1 ACHE
Peroxisome matrix 1 CAT
peroxisomal matrix 2 CAT, HSD17B4
peroxisomal membrane 2 CAT, HSD17B4
nuclear speck 1 PPP1R8
Lipid-anchor, GPI-anchor 2 ACHE, TREH
spliceosomal complex 1 PPP1R8
tertiary granule membrane 1 GAA
euchromatin 1 ALKBH1
side of membrane 2 ACHE, TREH
ficolin-1-rich granule lumen 2 CAT, GYG1
secretory granule lumen 2 CAT, GYG1
azurophil granule membrane 1 GAA
synaptic cleft 1 ACHE
ficolin-1-rich granule membrane 1 GAA
TRC complex 1 SGTA
catalase complex 1 CAT
autolysosome lumen 1 GAA
[Isoform H]: Cell membrane 1 ACHE
methionine adenosyltransferase complex 1 MAT1A


文献列表

  • Hyojin Ko, Ingrid Fricks, Andrei A Ivanov, T Kendall Harden, Kenneth A Jacobson. Structure-activity relationship of uridine 5'-diphosphoglucose analogues as agonists of the human P2Y14 receptor. Journal of medicinal chemistry. 2007 May; 50(9):2030-9. doi: 10.1021/jm061222w. [PMID: 17407275]
  • Y Ma, R J Stern, M S Scherman, V D Vissa, W Yan, V C Jones, F Zhang, S G Franzblau, W H Lewis, M R McNeil. Drug targeting Mycobacterium tuberculosis cell wall synthesis: genetics of dTDP-rhamnose synthetic enzymes and development of a microtiter plate-based screen for inhibitors of conversion of dTDP-glucose to dTDP-rhamnose. Antimicrobial agents and chemotherapy. 2001 May; 45(5):1407-16. doi: 10.1128/aac.45.5.1407-1416.2001. [PMID: 11302803]