Propionyl-CoA (BioDeep_00000004145)

 

Secondary id: BioDeep_00000630385, BioDeep_00001868780

natural product human metabolite PANOMIX_OTCML-2023 Endogenous


代谢物信息卡片


{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-(propanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

化学式: C24H40N7O17P3S (823.1414)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(otcml) 7.3%

分子结构信息

SMILES: CCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=NC3=C(N=CN=C32)N)O)OP(=O)(O)O)O
InChI: InChI=1S/C24H40N7O17P3S/c1-4-15(33)52-8-7-26-14(32)5-6-27-22(36)19(35)24(2,3)10-45-51(42,43)48-50(40,41)44-9-13-18(47-49(37,38)39)17(34)23(46-13)31-12-30-16-20(25)28-11-29-21(16)31/h11-13,17-19,23,34-35H,4-10H2,1-3H3,(H,26,32)(H,27,36)(H,40,41)(H,42,43)(H2,25,28,29)(H2,37,38,39)

描述信息

Propionyl-CoA is an intermediate in the metabolism of propanoate. Propionic aciduria is caused by an autosomal recessive disorder of propionyl coenzyme A (CoA) carboxylase deficiency (EC 6.4.1.3). In propionic aciduria, propionyl CoA accumulates within the mitochondria in massive quantities; free carnitine is then esterified, creating propionyl carnitine, which is then excreted in the urine. Because the supply of carnitine in the diet and from synthesis is limited, such patients readily develop carnitine deficiency as a result of the increased loss of acylcarnitine derivatives. This condition demands supplementation of free carnitine above the normal dietary intake to continue to remove (detoxify) the accumulating organic acids. Propionyl-CoA is a substrate for Acyl-CoA dehydrogenase (medium-chain specific, mitochondrial), Acetyl-coenzyme A synthetase 2-like (mitochondrial), Propionyl-CoA carboxylase alpha chain (mitochondrial), Methylmalonate-semialdehyde dehydrogenase (mitochondrial), Trifunctional enzyme beta subunit (mitochondrial), 3-ketoacyl-CoA thiolase (peroxisomal), Acyl-CoA dehydrogenase (long-chain specific, mitochondrial), Malonyl-CoA decarboxylase (mitochondrial), Acetyl-coenzyme A synthetase (cytoplasmic), 3-ketoacyl-CoA thiolase (mitochondrial) and Propionyl-CoA carboxylase beta chain (mitochondrial). (PMID: 10650319) [HMDB]
Propionyl-CoA is an intermediate in the metabolism of propanoate. Propionic aciduria is caused by an autosomal recessive disorder of propionyl coenzyme A (CoA) carboxylase deficiency (EC 6.4.1.3). In propionic aciduria, propionyl CoA accumulates within the mitochondria in massive quantities; free carnitine is then esterified, creating propionyl carnitine, which is then excreted in the urine. Because the supply of carnitine in the diet and from synthesis is limited, such patients readily develop carnitine deficiency as a result of the increased loss of acylcarnitine derivatives. This condition demands supplementation of free carnitine above the normal dietary intake to continue to remove (detoxify) the accumulating organic acids. Propionyl-CoA is a substrate for Acyl-CoA dehydrogenase (medium-chain specific, mitochondrial), Acetyl-coenzyme A synthetase 2-like (mitochondrial), Propionyl-CoA carboxylase alpha chain (mitochondrial), Methylmalonate-semialdehyde dehydrogenase (mitochondrial), Trifunctional enzyme beta subunit (mitochondrial), 3-ketoacyl-CoA thiolase (peroxisomal), Acyl-CoA dehydrogenase (long-chain specific, mitochondrial), Malonyl-CoA decarboxylase (mitochondrial), Acetyl-coenzyme A synthetase (cytoplasmic), 3-ketoacyl-CoA thiolase (mitochondrial) and Propionyl-CoA carboxylase beta chain (mitochondrial). (PMID: 10650319).

同义名列表

20 个代谢物同义名

{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-(propanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid; S-[2-[3-[[4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] propanethioate; n-Propionyl coenzyme A lithium salt; α-methylacetyl-Coenzyme A; 2-methylacetyl-Coenzyme A; α-methylacetyl-CoA; S-Propanoyl-coenzyme A; S-Propionylcoenzyme A; S-Propionyl-coenzym-a; Propionyl-coenzyme A; Propionyl coenzyme A; Propanoyl-coenzyme A; 2-methylacetyl-CoA; S-Propanoyl-CoA; n-Propionyl CoA; Propionoyl-CoA; Propionyl CoA; Propanoyl-CoA; Propionyl-CoA; Propanoyl-CoA



数据库引用编号

31 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(14)

BioCyc(2)

PlantCyc(0)

代谢反应

723 个相关的代谢反应过程信息。

Reactome(176)

BioCyc(8)

WikiPathways(1)

Plant Reactome(426)

INOH(4)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(108)

PharmGKB(0)

3 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 9 ACADM, ACOT7, ACSL4, ALB, COASY, FASN, MLYCD, MMUT, PC
Peripheral membrane protein 2 CPT2, CRAT
Endoplasmic reticulum membrane 4 ACSL1, ACSL3, ACSL4, ACSL5
Nucleus 4 ACADM, ALB, CS, PPARA
cytosol 9 ACOT7, ALB, CRAT, FASN, MLYCD, PC, PCCA, PCCB, PRKCQ
mitochondrial membrane 1 ACADM
centrosome 1 ALB
nucleoplasm 4 ACOT7, ACSL5, CPT2, PPARA
Cell membrane 2 ACSL4, ACSL5
Golgi apparatus 3 ACSL3, ALB, FASN
Golgi membrane 1 INS
mitochondrial inner membrane 2 CPT2, CRAT
plasma membrane 5 ACSL3, ACSL4, ACSL5, FASN, PRKCQ
Membrane 6 ACSL1, ACSL3, ACSL4, ACSL5, CS, FASN
axon 1 ACADM
extracellular exosome 6 ACOT7, ACSL4, ALB, COASY, CS, FASN
endoplasmic reticulum 6 ACSL1, ACSL3, ACSL4, ACSL5, ALB, CRAT
extracellular space 2 ALB, INS
perinuclear region of cytoplasm 1 ACSL3
mitochondrion 14 ACADM, ACOT7, ACSL1, ACSL4, ACSL5, COASY, CPT2, CRAT, CS, MLYCD, MMUT, PC, PCCA, PCCB
protein-containing complex 1 ALB
Microsome membrane 3 ACSL1, ACSL3, ACSL4
Secreted 2 ALB, INS
extracellular region 2 ALB, INS
Mitochondrion outer membrane 4 ACSL1, ACSL3, ACSL4, ACSL5
Single-pass membrane protein 2 ACSL1, ACSL5
mitochondrial outer membrane 5 ACSL1, ACSL3, ACSL4, ACSL5, COASY
Mitochondrion matrix 8 ACADM, COASY, CS, MLYCD, MMUT, PC, PCCA, PCCB
mitochondrial matrix 8 ACADM, COASY, CS, MLYCD, MMUT, PC, PCCA, PCCB
anchoring junction 1 ALB
centriolar satellite 1 PRKCQ
nucleolus 2 ACSL5, CPT2
Mitochondrion inner membrane 2 CPT2, CRAT
Matrix side 2 CPT2, CRAT
Peroxisome 2 CRAT, MLYCD
Peroxisome matrix 1 MLYCD
peroxisomal matrix 2 CRAT, MLYCD
peroxisomal membrane 3 ACSL1, ACSL3, ACSL4
ciliary basal body 1 ALB
chromatin 1 PPARA
centriole 1 ALB
[Isoform 1]: Mitochondrion 2 ACOT7, CRAT
spindle pole 1 ALB
blood microparticle 1 ALB
endosome lumen 1 INS
Lipid droplet 2 ACSL3, ACSL4
mitochondria-associated endoplasmic reticulum membrane contact site 1 ACSL4
Melanosome 1 FASN
Peroxisome membrane 3 ACSL1, ACSL3, ACSL4
[Isoform 4]: Cytoplasm, cytosol 1 ACOT7
[Isoform 6]: Cytoplasm, cytosol 1 ACOT7
[Isoform 5]: Mitochondrion 1 ACOT7
secretory granule lumen 1 INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 2 ALB, INS
platelet alpha granule lumen 1 ALB
transport vesicle 1 INS
Single-pass type III membrane protein 4 ACSL1, ACSL3, ACSL4, ACSL5
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
immunological synapse 1 PRKCQ
aggresome 1 PRKCQ
catalytic complex 2 PCCA, PCCB
[Isoform 2]: Peroxisome 1 CRAT
glycogen granule 1 FASN
ciliary transition fiber 1 ALB
acetyl-CoA carboxylase complex 1 PCCB


文献列表

  • Jiaqi Sun, Jun Ding, Qingsong Shen, Xiyang Wang, Min Wang, Yongping Huang, Xuechun Zhang, Huan Zhu, Feng Zhang, Dongde Wu, Min Peng, Zhonglin Zhang, Yufeng Yuan, Wenhua Li, Zhi-Gang She, Xiao-Jing Zhang, Hongliang Li, Peng Zhang, Zan Huang. Decreased propionyl-CoA metabolism facilitates metabolic reprogramming and promotes hepatocellular carcinoma. Journal of hepatology. 2023 Mar; 78(3):627-642. doi: 10.1016/j.jhep.2022.11.017. [PMID: 36462680]
  • Zhenhua Su, Zhenjian Zhang, Jian Yu, Congcong Yuan, Yanbing Shen, Jianxin Wang, Liqiu Su, Min Wang. Combined enhancement of the propionyl-CoA metabolic pathway for efficient androstenedione production in Mycolicibacterium neoaurum. Microbial cell factories. 2022 Oct; 21(1):218. doi: 10.1186/s12934-022-01942-x. [PMID: 36266684]
  • Gregory H Babunovic, Michael A DeJesus, Barbara Bosch, Michael R Chase, Thibault Barbier, Amy K Dickey, Bryan D Bryson, Jeremy M Rock, Sarah M Fortune. CRISPR Interference Reveals That All-Trans-Retinoic Acid Promotes Macrophage Control of Mycobacterium tuberculosis by Limiting Bacterial Access to Cholesterol and Propionyl Coenzyme A. mBio. 2022 02; 13(1):e0368321. doi: 10.1128/mbio.03683-21. [PMID: 35038923]
  • Wentao He, You Wang, Erik J Xie, Michael A Barry, Guo-Fang Zhang. Metabolic perturbations mediated by propionyl-CoA accumulation in organs of mouse model of propionic acidemia. Molecular genetics and metabolism. 2021 11; 134(3):257-266. doi: 10.1016/j.ymgme.2021.09.009. [PMID: 34635437]
  • Ram Prasad Bhusal, Wanting Jiao, Brooke X C Kwai, Jóhannes Reynisson, Annabelle J Collins, Jonathan Sperry, Ghader Bashiri, Ivanhoe K H Leung. Acetyl-CoA-mediated activation of Mycobacterium tuberculosis isocitrate lyase 2. Nature communications. 2019 10; 10(1):4639. doi: 10.1038/s41467-019-12614-7. [PMID: 31604954]
  • Agnese Serafini, Lendl Tan, Stuart Horswell, Steven Howell, Daniel J Greenwood, Deborah M Hunt, Minh-Duy Phan, Mark Schembri, Mercedes Monteleone, Christine R Montague, Warwick Britton, Acely Garza-Garcia, Ambrosius P Snijders, Brian VanderVen, Maximiliano G Gutierrez, Nicholas P West, Luiz Pedro S de Carvalho. Mycobacterium tuberculosis requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism. Molecular microbiology. 2019 10; 112(4):1284-1307. doi: 10.1111/mmi.14362. [PMID: 31389636]
  • Jing Hou, Heping Zheng, Wen-Shyong Tzou, David R Cooper, Maksymilian Chruszcz, Mahendra D Chordia, Keehwan Kwon, Marek Grabowski, Wladek Minor. Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels. The FEBS journal. 2018 08; 285(15):2900-2921. doi: 10.1111/febs.14588. [PMID: 29917313]
  • Masaki Kajimoto, Dolena R Ledee, Aaron K Olson, Nancy G Isern, Christine Des Rosiers, Michael A Portman. Differential effects of octanoate and heptanoate on myocardial metabolism during extracorporeal membrane oxygenation in an infant swine model. American journal of physiology. Heart and circulatory physiology. 2015 Oct; 309(7):H1157-65. doi: 10.1152/ajpheart.00298.2015. [PMID: 26232235]
  • Zhicheng Jin, Jessica M Berthiaume, Qingling Li, Fabrice Henry, Zhong Huang, Sushabhan Sadhukhan, Peng Gao, Gregory P Tochtrop, Michelle A Puchowicz, Guo-Fang Zhang. Catabolism of (2E)-4-hydroxy-2-nonenal via ω- and ω-1-oxidation stimulated by ketogenic diet. The Journal of biological chemistry. 2014 Nov; 289(46):32327-32338. doi: 10.1074/jbc.m114.602458. [PMID: 25274632]
  • Laura Strittmatter, Yang Li, Nathan J Nakatsuka, Sarah E Calvo, Zenon Grabarek, Vamsi K Mootha. CLYBL is a polymorphic human enzyme with malate synthase and β-methylmalate synthase activity. Human molecular genetics. 2014 May; 23(9):2313-23. doi: 10.1093/hmg/ddt624. [PMID: 24334609]
  • Stanislav Obruca, Ondrej Snajdar, Zdenek Svoboda, Ivana Marova. Application of random mutagenesis to enhance the production of polyhydroxyalkanoates by Cupriavidus necator H16 on waste frying oil. World journal of microbiology & biotechnology. 2013 Dec; 29(12):2417-28. doi: 10.1007/s11274-013-1410-5. [PMID: 23801326]
  • Wonsik Lee, Brian C VanderVen, Ruth J Fahey, David G Russell. Intracellular Mycobacterium tuberculosis exploits host-derived fatty acids to limit metabolic stress. The Journal of biological chemistry. 2013 Mar; 288(10):6788-800. doi: 10.1074/jbc.m112.445056. [PMID: 23306194]
  • Lan Gao, William Chiou, Hua Tang, Xueheng Cheng, Heidi S Camp, David J Burns. Simultaneous quantification of malonyl-CoA and several other short-chain acyl-CoAs in animal tissues by ion-pairing reversed-phase HPLC/MS. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences. 2007 Jun; 853(1-2):303-13. doi: 10.1016/j.jchromb.2007.03.029. [PMID: 17442642]
  • Yong-Qiang Zhang, Matthias Brock, Nancy P Keller. Connection of propionyl-CoA metabolism to polyketide biosynthesis in Aspergillus nidulans. Genetics. 2004 Oct; 168(2):785-94. doi: 10.1534/genetics.104.027540. [PMID: 15514053]
  • Stefan Kölker, Marina Schwab, Friederike Hörster, Sven Sauer, Angela Hinz, Nicole I Wolf, Ertan Mayatepek, Georg F Hoffmann, Jan A M Smeitink, Jürgen G Okun. Methylmalonic acid, a biochemical hallmark of methylmalonic acidurias but no inhibitor of mitochondrial respiratory chain. The Journal of biological chemistry. 2003 Nov; 278(48):47388-93. doi: 10.1074/jbc.m308861200. [PMID: 12972416]
  • S Slater, T A Mitsky, K L Houmiel, M Hao, S E Reiser, N B Taylor, M Tran, H E Valentin, D J Rodriguez, D A Stone, S R Padgette, G Kishore, K J Gruys. Metabolic engineering of Arabidopsis and Brassica for poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer production. Nature biotechnology. 1999 Oct; 17(10):1011-6. doi: 10.1038/13711. [PMID: 10504704]
  • S C Hunter, J B Ohlrogge. Regulation of spinach chloroplast acetyl-CoA carboxylase. Archives of biochemistry and biophysics. 1998 Nov; 359(2):170-8. doi: 10.1006/abbi.1998.0900. [PMID: 9808758]
  • A C Eschenlauer, S K Stoup, F Srienc, D A Somers. Production of heteropolymeric polyhydroxyalkanoate in Escherichia coli from a single carbon source. International journal of biological macromolecules. 1996 Aug; 19(2):121-30. doi: 10.1016/0141-8130(96)01114-2. [PMID: 8842775]
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