Tridecanoic acid (BioDeep_00000001737)

Secondary id: BioDeep_00000400544, BioDeep_00000628672, BioDeep_00000863335

human metabolite PANOMIX_OTCML-2023 Endogenous PANOMIX LipidSearch BioNovoGene_Lab2019

代谢物信息卡片

(S)-2-Aminotridecanoic acid

化学式: C13H26O2 (214.1933)
中文名称: 十三烷酸, 十三酸
谱图信息: 最多检出来源 Homo sapiens(feces) 7.51%

分子结构信息

SMILES: CCCCCCCCCCCCC(=O)O
InChI: InChI=1S/C13H26O2/c1-2-3-4-5-6-7-8-9-10-11-12-13(14)15/h2-12H2,1H3,(H,14,15)

描述信息

Tridecanoic acid, also known as N-tridecanoate or C13:0, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. Tridecanoic acid is a very hydrophobic molecule, practically insoluble in water, and relatively neutral. Tridecanoic acid is a potentially toxic compound.
Tridecanoic acid is a short-chain fatty acid. Tridecanoic acid is found in many foods, some of which are nutmeg, muskmelon, black elderberry, and coconut.
Tridecanoic acid (N-Tridecanoic acid), a 13-carbon medium-chain saturated fatty acid, can serve as an antipersister and antibiofilm agent that may be applied to research bacterial infections. Tridecanoic acid inhibits Escherichia coli persistence and biofilm formation[1].
Tridecanoic acid (N-Tridecanoic acid), a 13-carbon medium-chain saturated fatty acid, can serve as an antipersister and antibiofilm agent that may be applied to research bacterial infections. Tridecanoic acid inhibits Escherichia coli persistence and biofilm formation[1].

同义名列表

16 个代谢物同义名

(S)-2-Aminotridecanoic acid; 2S-amino-tridecanoic acid; (S)-2-Aminotridecanoate; 2S-Amino-tridecanoate; N-TRIDECANOIC ACID; TRIDECANOIC ACID; N-Tridecoic acid; Tridecylic acid; N-TRIDECANOate; N-Tridecoate; Tridecanoate; Tridecylate; C13:0; Tridecanoic acid; Tridecanoic acid; Tridecanoic acid

数据库引用编号

21 个数据库交叉引用编号

ChEBI: CHEBI:45919
KEGG: C17076
PubChem: 12530
HMDB: HMDB0000910
Metlin: METLIN4204
DrugBank: DB02448
ChEMBL: CHEMBL107874
Wikipedia: Tridecylic acid
KNApSAcK: C00007422
foodb: FDB010409
chemspider: 12013
CAS: 638-53-9
PMhub: MS000001077
PubChem: 96023554
LipidMAPS: LMFA01010013
PDB-CCD: TDA
NIKKAJI: J1.715I
PANOMIX LipidSearch: C13
medchemexpress: HY-Y1718
BioNovoGene_Lab2019: BioNovoGene_Lab2019-719
KNApSAcK: 45919

分类词条

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

37 个相关的物种来源信息

72714 - Agelas: 10.1007/BF02536001
25641 - Aloe: -
48101 - Angelica dahurica ( Fisch.ex Hoffm. ) Benth. et Hook.f.: -
48101 - Angelica dahurica (Fisch.ex Hoffm.)Benth .et Hook.f.var.formosana(Boiss.）Shsn et Yuan: -
436207 - Arnica montana: 10.1055/S-0028-1099547
41492 - Bellis perennis: 10.1016/0031-9422(95)00183-8
68574 - Chondrosia reniformis: 10.1021/NP50100A032
3656 - Cucumis melo: 10.1016/S0031-9422(00)83494-9
298346 - Dictamnus albus: 10.1007/BF00563628
308281 - Diplotaxis harra: 10.1002/(SICI)1099-1573(199906)13:4<329::AID-PTR458>3.0.CO;2-U
33136 - Epilobium dodonaei: 10.1007/BF00579976
72930 - Erigeron philadelphicus: 10.1271/BBB1961.45.507
1078594 - Erucaria microcarpa: 10.1002/(SICI)1099-1573(199906)13:4<329::AID-PTR458>3.0.CO;2-U
3617 - Fagopyrum esculentum: 10.1007/BF00579976
52153 - Festuca rubra: 10.1016/0031-9422(91)84185-U
642351 - Frullania pycnantha: 10.1016/S0031-9422(02)00542-3
49827 - Glycyrrhiza glabra: 10.1271/NOGEIKAGAKU1924.61.1119
9606 - Homo sapiens: -
1548589 - Inula grandis: 10.1007/BF00564338
75948 - Lactuca saligna: 10.3109/13880209209054625
39334 - Leea guineensis: 10.1002/1099-1026(200005/06)15:3<182::AID-FFJ888>3.0.CO;2-X
4606 - Lolium arundinaceum: 10.1016/0031-9422(91)84185-U
6398 - Lumbricus terrestris: 10.1271/BBB1961.52.2379
29780 - Mangifera indica: 10.1007/BF02541638
29719 - Mentha spicata: 10.1007/BF02249628
1336873 - Myrmekioderma rea: 10.1021/NP50100A032
90693 - Osmunda japonica: 10.1248/CPB.32.2815
4054 - Panax Ginseng C. A. Mey.: -
158596 - Pelargonium endlicherianum: 10.1055/S-2006-960872
48386 - Perilla Frutescens: -
105903 - Rhododendron mucronulatum: 10.1007/BF00630623
268906 - Salvia fruticosa: 10.1016/S0367-326X(01)00327-6
375857 - Scolochloa festucacea: 10.1016/0031-9422(91)84185-U
4722 - Serenoa repens: 10.1016/S0944-7113(11)80030-9
1928 - Streptomyces rochei: 10.3389/FMICB.2018.01302
265730 - Streptomyces sundarbansensis: 10.3389/FMICB.2018.01302
50225 - Taraxacum officinale: 10.1007/BF00579976

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位		关联基因列表
Cytoplasm	7	CAT, FASN, HDC, IKBKG, NFKBIA, NMT1, PLA2G12A
Peripheral membrane protein	2	MBP, NMT1
Endoplasmic reticulum membrane	3	FADS1, FADS2, SCD
Nucleus	5	CBX4, HDC, IKBKG, MBP, NFKBIA
cytosol	9	CAT, FASN, HDC, IKBKG, LEP, MBP, NFKBIA, NMT1, PRKCQ
nuclear body	1	CBX4
nucleoplasm	3	CBX4, IKBKG, NFKBIA
Cytoplasmic side	1	MBP
Multi-pass membrane protein	3	FADS1, FADS2, SCD
Synapse	1	MBP
cell surface	1	MBP
Golgi apparatus	2	ATRN, FASN
Golgi membrane	1	INS
lysosomal membrane	1	GAA
neuronal cell body	1	MBP
Cytoplasm, cytosol	1	NMT1
Lysosome	1	GAA
plasma membrane	9	ATRN, FADS2, FASN, GAA, KNG1, MBP, NFKBIA, NMT1, PRKCQ
Membrane	8	CAT, FADS1, FADS2, FASN, GAA, HDC, NMT1, SCD
extracellular exosome	6	ATRN, CAT, FASN, GAA, KNG1, MBP
Lysosome membrane	1	GAA
endoplasmic reticulum	1	SCD
extracellular space	5	ATRN, INS, KNG1, LEP, OLFML3
lysosomal lumen	1	GAA
mitochondrion	3	ACAA2, CAT, FADS1
protein-containing complex	3	CAT, IKBKG, MBP
intracellular membrane-bounded organelle	3	CAT, FADS1, GAA
Single-pass type I membrane protein	1	ATRN
Secreted	5	GAA, INS, LEP, OLFML3, PLA2G12A
extracellular region	7	CAT, GAA, INS, KNG1, LEP, MBP, PLA2G12A
[Isoform 2]: Secreted	1	ATRN
mitochondrial matrix	2	ACAA2, CAT
centriolar satellite	1	PRKCQ
Extracellular vesicle	1	OLFML3
nucleolus	1	SCD
focal adhesion	1	CAT
Peroxisome	1	CAT
Peroxisome matrix	1	CAT
peroxisomal matrix	1	CAT
peroxisomal membrane	1	CAT
collagen-containing extracellular matrix	2	KNG1, MBP
nuclear speck	1	CBX4
cell periphery	1	MBP
mitotic spindle	1	IKBKG
[Isoform 3]: Nucleus	1	MBP
Secreted, extracellular space	1	KNG1
spindle pole	1	IKBKG
blood microparticle	1	KNG1
[Isoform 3]: Secreted	1	ATRN
endosome lumen	1	INS
[Isoform 1]: Endoplasmic reticulum membrane	1	FADS1
tertiary granule membrane	1	GAA
Melanosome	1	FASN
Nucleus speckle	1	CBX4
myelin sheath	1	MBP
ubiquitin ligase complex	1	IKBKG
ficolin-1-rich granule lumen	2	CAT, MBP
secretory granule lumen	2	CAT, INS
Golgi lumen	1	INS
endoplasmic reticulum lumen	2	INS, KNG1
PcG protein complex	1	CBX4
PRC1 complex	1	CBX4
platelet alpha granule lumen	1	KNG1
transport vesicle	2	INS, MBP
azurophil granule membrane	1	GAA
Endoplasmic reticulum-Golgi intermediate compartment membrane	1	INS
immunological synapse	1	PRKCQ
aggresome	1	PRKCQ
IkappaB kinase complex	1	IKBKG
ficolin-1-rich granule membrane	1	GAA
[Isoform 1]: Cell membrane	1	ATRN
[Isoform 2]: Endoplasmic reticulum membrane	1	FADS1
compact myelin	1	MBP
internode region of axon	1	MBP
catalase complex	1	CAT
autolysosome lumen	1	GAA
[Bone marrow proteoglycan]: Secreted	1	MBP
I-kappaB/NF-kappaB complex	1	NFKBIA
glycogen granule	1	FASN
Myelin membrane	1	MBP

文献列表

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Eriko Harada, Jun Nakagawa, Tsunaki Asano, Masato Taoka, Hiroyuki Sorimachi, Yoshihiro Ito, Toshiro Aigaki, Takashi Matsuo. Functional evolution of duplicated odorant-binding protein genes, Obp57d and Obp57e, in Drosophila. PloS one. 2012; 7(1):e29710. doi: 10.1371/journal.pone.0029710. [PMID: 22238638]
Anne-Catherine Schneider, Pauline Beguin, Sophie Bourez, James W Perfield, Eric Mignolet, Cathy Debier, Yves-Jacques Schneider, Yvan Larondelle. Conversion of t11t13 CLA into c9t11 CLA in Caco-2 cells and inhibition by sterculic oil. PloS one. 2012; 7(3):e32824. doi: 10.1371/journal.pone.0032824. [PMID: 22427892]
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Helen J Atherton, Melanie K Gulston, Nigel J Bailey, Kian-Kai Cheng, Wen Zhang, Kieran Clarke, Julian L Griffin. Metabolomics of the interaction between PPAR-alpha and age in the PPAR-alpha-null mouse. Molecular systems biology. 2009; 5(?):259. doi: 10.1038/msb.2009.18. [PMID: 19357638]
Zhihua Jiang, Jennifer J Michal, David J Tobey, Tyler F Daniels, Daniel C Rule, Michael D Macneil. Significant associations of stearoyl-CoA desaturase (SCD1) gene with fat deposition and composition in skeletal muscle. International journal of biological sciences. 2008 Sep; 4(6):345-51. doi: 10.7150/ijbs.4.345. [PMID: 18825276]
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