Trigofoenoside D (BioDeep_00000000407)

 

Secondary id: BioDeep_00001867500

human metabolite PANOMIX_OTCML-2023 Endogenous natural product


代谢物信息卡片


2-[(3-hydroxy-6-{[6-hydroxy-7,9,13-trimethyl-6-(3-methyl-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butyl)-5-oxapentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icos-18-en-16-yl]oxy}-2-(hydroxymethyl)-5-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

化学式: C51H84O23 (1064.5403)
中文名称: 原纤细薯蓣皂苷, 原纤细薯蓣皂甙
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC(CCC1(O)OC2CC3C4CC=C5CC(CCC5(C)C4CCC3(C)C2C1C)OC1OC(CO)C(O)C(OC2OC(CO)C(O)C(O)C2O)C1OC1OC(C)C(O)C(O)C1O)COC1OC(CO)C(O)C(O)C1O
InChI: InChI=1S/C51H84O23/c1-20(19-66-45-40(62)38(60)34(56)29(16-52)69-45)8-13-51(65)21(2)32-28(74-51)15-27-25-7-6-23-14-24(9-11-49(23,4)26(25)10-12-50(27,32)5)68-48-44(73-46-41(63)37(59)33(55)22(3)67-46)43(36(58)31(18-54)71-48)72-47-42(64)39(61)35(57)30(17-53)70-47/h6,20-22,24-48,52-65H,7-19H2,1-5H3

描述信息

Protogracillin is a steroid saponin.
Protogracillin is a natural product found in Tribulus terrestris, Paris polyphylla var. chinensis, and other organisms with data available.
Trigofoenoside D is found in fenugreek. Trigofoenoside D is isolated from seeds of fenugreek (Trigonella foenum-graecum).
Protogracillin is a steroidal saponin isolated from Dioscorea zingiberensis Wright (DZW). Steroidal saponins from DZW rhizomes have the potential to reduce the risk of cardiovascular diseases by anti-thrombotic action[1].
Protogracillin is a steroidal saponin isolated from Dioscorea zingiberensis Wright (DZW). Steroidal saponins from DZW rhizomes have the potential to reduce the risk of cardiovascular diseases by anti-thrombotic action[1].

同义名列表

10 个代谢物同义名

2-[(3-hydroxy-6-{[6-hydroxy-7,9,13-trimethyl-6-(3-methyl-4-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butyl)-5-oxapentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icos-18-en-16-yl]oxy}-2-(hydroxymethyl)-5-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol; (3beta,22alpha,25R)-26-(beta-D-Glucopyranosyloxy)-22-hydroxyfurost-5-en-3-yl O-6-deoxy-alpha-L-mannopyranosyl-(1-->2)-O-[beta-D-glucopyranosyl-(1-->3)]-beta-D-glucopyranoside; (3beta,22R,25R)-26-(beta-D-glucopyranosyloxy)-22-hydroxyfurost-5-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-[beta-D-glucopyranosyl-(1->3)]-beta-D-glucopyranoside; Ethyl 1-(ethylthio)ethyl disulphide; 5-Methyl-3,4,6-trithiaoctane; PROTOGRACILLIN(P); Trigofoenoside D; Proto-Gracillin; Protogracillin; Protogracillin



数据库引用编号

20 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

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代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

61 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 7 FGF2, MAPK14, MITF, RB1, TYR, TYRP1, XDH
Endosome membrane 1 TYRP1
Nucleus 4 FGF2, MAPK14, MITF, RB1
cytosol 5 LIPE, MAPK14, MITF, RB1, XDH
nucleoplasm 3 MAPK14, MITF, RB1
Cell membrane 2 LIPE, TNF
cell surface 1 TNF
glutamatergic synapse 1 MAPK14
lysosomal membrane 1 MITF
neuronal cell body 1 TNF
Cytoplasm, cytosol 1 LIPE
Lysosome 1 TYR
plasma membrane 2 F2, TNF
Membrane 1 LIPE
caveola 1 LIPE
extracellular exosome 1 F2
Lysosome membrane 1 MITF
extracellular space 5 F2, FGF2, PNLIP, TNF, XDH
perinuclear region of cytoplasm 1 TYR
mitochondrion 1 MAPK14
protein-containing complex 1 MITF
intracellular membrane-bounded organelle 1 TYR
Single-pass type I membrane protein 2 TYR, TYRP1
Secreted 3 F2, FGF2, PNLIP
extracellular region 5 F2, FGF2, MAPK14, PNLIP, TNF
external side of plasma membrane 1 TNF
Melanosome membrane 2 TYR, TYRP1
Golgi-associated vesicle 1 TYR
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Membrane raft 1 TNF
spindle 1 RB1
Peroxisome 1 XDH
intracellular vesicle 1 TYRP1
sarcoplasmic reticulum 1 XDH
PML body 1 RB1
collagen-containing extracellular matrix 1 F2
nuclear speck 1 MAPK14
chromatin 2 MITF, RB1
phagocytic cup 1 TNF
spindle pole 1 MAPK14
blood microparticle 1 F2
Lipid droplet 1 LIPE
Membrane, caveola 1 LIPE
Melanosome 2 TYR, TYRP1
ficolin-1-rich granule lumen 1 MAPK14
secretory granule lumen 1 MAPK14
Golgi lumen 1 F2
endoplasmic reticulum lumen 1 F2
SWI/SNF complex 1 RB1
clathrin-coated endocytic vesicle membrane 1 TYRP1
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
chromatin lock complex 1 RB1
Rb-E2F complex 1 RB1
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF


文献列表