UDP-L-rhamnose (BioDeep_00000003571)

 

Secondary id: BioDeep_00000400433, BioDeep_00001734663

natural product human metabolite PANOMIX_OTCML-2023 Endogenous Volatile Flavor Compounds


代谢物信息卡片


{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({[hydroxy({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid

化学式: C15H24N2O16P2 (550.0601044)
中文名称: 尿苷-5'-二磷酸鼠李糖
谱图信息: 最多检出来源 Chinese Herbal Medicine(otcml) 1.92%

分子结构信息

SMILES: CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)O
InChI: InChI=1S/C15H24N2O16P2/c1-5-8(19)10(21)12(23)14(30-5)32-35(27,28)33-34(25,26)29-4-6-9(20)11(22)13(31-6)17-3-2-7(18)16-15(17)24/h2-3,5-6,8-14,19-23H,4H2,1H3,(H,25,26)(H,27,28)(H,16,18,24)/t5-,6+,8-,9+,10+,11+,12+,13+,14+/m0/s1

描述信息

UDP-L-rhamnose is synthesized from UDP-D-glucose. [HMDB]. UDP-L-rhamnose is found in many foods, some of which are maitake, orange bell pepper, common mushroom, and horseradish tree.
Acquisition and generation of the data is financially supported in part by CREST/JST.
UDP-L-rhamnose is synthesized from UDP-D-glucose.

同义名列表

38 个代谢物同义名

{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({[hydroxy({[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid; [(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-hydroxy-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy([hydroxy([(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy)phosphoryl]oxy)phosphinic acid; [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl][(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl] hydrogen phosphate; Uridine 5-(trihydrogen diphosphoric acid), mono(6-deoxy-beta-L-mannopyranosyl) ester; Uridine 5-(trihydrogen diphosphoric acid), mono(6-deoxy-b-L-mannopyranosyl) ester; Uridine 5-(trihydrogen diphosphoric acid), mono(6-deoxy-β-L-mannopyranosyl) ester; Uridine 5-(trihydrogen diphosphate), mono(6-deoxy-beta-L-mannopyranosyl) ester; Uridine 5-(trihydrogen diphosphate), mono(6-deoxy-b-L-mannopyranosyl) ester; Uridine 5-(trihydrogen diphosphate), mono(6-deoxy-β-L-mannopyranosyl) ester; Uridine-5-monophosphate glucopyranosyl-monophosphateester; GLUCOSE-uridine-C1,5-diphosphATE; Uridine 5-diphosphate galactose; Galactose-uridine-5-diphosphate; Uridine diphosphate-D-galactose; Uridine-5-diphosphate-mannose; Uridine diphosphate galactose; Uridine pyrophosphogalactose; Uridinediphosphate galactose; Uridine 5-diphosphogalactose; Uridine diphosphogalactose; Uridinediphosphogalactose; UDP-D-Galactopyranose; UDP-alpha-D-Galactose; UDP-galactopyranose; UDP-beta-L-Rhamnose; UDP-b-L-Rhamnose; UDP-Β-L-rhamnose; UDP-D-galactose; UDP-L-rhamnose; UDP Galactose; UDP-Galactose; UDP-Rhamnose; UDP-Gal; UDP-Rha; Udpgal; GDU; UPG; UDP-L-rhamnose



数据库引用编号

21 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

1 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(1)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Shuai Zhang, Yingying Wang, Zhirong Cui, Qianqian Li, Lingyi Kong, Jun Luo. Functional characterization of a Flavonol 3-O-rhamnosyltransferase and two UDP-rhamnose synthases from Hypericum monogynum. Plant physiology and biochemistry : PPB. 2023 Apr; 197(?):107643. doi: 10.1016/j.plaphy.2023.107643. [PMID: 36989989]
  • Wan-Tong Yu, Kang-Xin Hou, Xin-Yao Su, Xiao-Li Zhang, Jie Qiu, Cai-Xia Wang, Qiang Xue, Jin-Long Liu. [Cloning and expression analysis of UDP-rhamnose synthase from Citrus sinensis]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica. 2022 Jun; 47(12):3208-3214. doi: 10.19540/j.cnki.cjcmm.20220216.101. [PMID: 35851113]
  • Ben A Wagstaff, Azul Zorzoli, Helge C Dorfmueller. NDP-rhamnose biosynthesis and rhamnosyltransferases: building diverse glycoconjugates in nature. The Biochemical journal. 2021 02; 478(4):685-701. doi: 10.1042/bcj20200505. [PMID: 33599745]
  • Xinlong Dai, Guifu Zhao, Tianming Jiao, Yingling Wu, Xinmin Li, Kang Zhou, Liping Gao, Tao Xia. Involvement of Three CsRHM Genes from Camellia sinensis in UDP-Rhamnose Biosynthesis. Journal of agricultural and food chemistry. 2018 Jul; 66(27):7139-7149. doi: 10.1021/acs.jafc.8b01870. [PMID: 29916708]
  • Adam M Saffer, Vivian F Irish. Flavonol rhamnosylation indirectly modifies the cell wall defects of RHAMNOSE BIOSYNTHESIS1 mutants by altering rhamnose flux. The Plant journal : for cell and molecular biology. 2018 05; 94(4):649-660. doi: 10.1111/tpj.13885. [PMID: 29505161]
  • Liang Ma, Omar Salas, Kyle Bowler, Maor Bar-Peled, Amir Sharon. UDP-4-Keto-6-Deoxyglucose, a Transient Antifungal Metabolite, Weakens the Fungal Cell Wall Partly by Inhibition of UDP-Galactopyranose Mutase. mBio. 2017 11; 8(6):. doi: 10.1128/mbio.01559-17. [PMID: 29162710]
  • Liang Ma, Omar Salas, Kyle Bowler, Liat Oren-Young, Maor Bar-Peled, Amir Sharon. Genetic alteration of UDP-rhamnose metabolism in Botrytis cinerea leads to the accumulation of UDP-KDG that adversely affects development and pathogenicity. Molecular plant pathology. 2017 02; 18(2):263-275. doi: 10.1111/mpp.12398. [PMID: 26991954]
  • Yang-Hsin Hsu, Takayoshi Tagami, Kana Matsunaga, Masayuki Okuyama, Takashi Suzuki, Naonobu Noda, Masahiko Suzuki, Hanako Shimura. Functional characterization of UDP-rhamnose-dependent rhamnosyltransferase involved in anthocyanin modification, a key enzyme determining blue coloration in Lobelia erinus. The Plant journal : for cell and molecular biology. 2017 01; 89(2):325-337. doi: 10.1111/tpj.13387. [PMID: 27696560]
  • María Isabel Casas, María Lorena Falcone-Ferreyra, Nan Jiang, María Katherine Mejía-Guerra, Eduardo Rodríguez, Tyler Wilson, Jacob Engelmeier, Paula Casati, Erich Grotewold. Identification and Characterization of Maize salmon silks Genes Involved in Insecticidal Maysin Biosynthesis. The Plant cell. 2016 06; 28(6):1297-309. doi: 10.1105/tpc.16.00003. [PMID: 27221383]
  • Viviana Martinez, Miles Ingwers, James Smith, John Glushka, Ting Yang, Maor Bar-Peled. Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in pathogenic fungi Magnaporthe grisea and Botryotinia fuckeliana. The Journal of biological chemistry. 2012 Jan; 287(2):879-92. doi: 10.1074/jbc.m111.287367. [PMID: 22102281]