Spheroidene (BioDeep_00000010961)

   

natural product


代谢物信息卡片


Spheroidene

化学式: C41H60O (568.4644)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(lipidomics) 17.63%

分子结构信息

SMILES: C(/CC(C)(C)OC)=C\C(=C\C=C\C(=C\C=C\C(=C\C=C\C=C(/C)\C=C\C=C(\CC/C=C(/CC/C=C(\C)/C)\C)/C)\C)\C)\C
InChI: InChI=1S/C41H60O/c1-34(2)20-14-23-37(5)26-17-29-38(6)27-15-24-35(3)21-12-13-22-36(4)25-16-28-39(7)30-18-31-40(8)32-19-33-41(9,10)42-11/h12-13,15-16,18-22,24-28,30-32H,14,17,23,29,33H2,1-11H3/b13-12+,24-15+,25-16+,30-18+,32-19+,35-21+,36-22+,37-26+,38-27+,39-28+,40-31+

描述信息

D020011 - Protective Agents > D000975 - Antioxidants > D002338 - Carotenoids

同义名列表

2 个代谢物同义名

Spheroidene; Spheroidene



数据库引用编号

16 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(1)

PlantCyc(0)

代谢反应

1 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(1)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

14 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 2 CTH, RYR1
Peripheral membrane protein 3 MBP, PLOD2, PLOD3
Endoplasmic reticulum membrane 3 PLOD1, PLOD2, PLOD3
Mitochondrion membrane 1 TSPO
Nucleus 1 MBP
cytosol 3 CTH, MBP, TSPO
mitochondrial membrane 1 TSPO
trans-Golgi network 1 PLOD3
Cytoplasmic side 1 MBP
Multi-pass membrane protein 2 RYR1, TSPO
Synapse 1 MBP
cell cortex 1 RYR1
cell surface 1 MBP
Golgi apparatus 1 PLOD3
neuronal cell body 1 MBP
sarcolemma 1 RYR1
smooth endoplasmic reticulum 1 RYR1
plasma membrane 3 CTH, MBP, RYR1
Membrane 3 CTH, RYR1, TSPO
extracellular exosome 8 CTH, LYZ, MBP, PLOD1, PLOD2, PLOD3, RYR1, TSPO
Lumenal side 2 PLOD2, PLOD3
endoplasmic reticulum 4 PLOD1, PLOD2, PLOD3, TSPO
extracellular space 2 LYZ, PLOD3
mitochondrion 1 TSPO
protein-containing complex 1 MBP
intracellular membrane-bounded organelle 1 TSPO
Single-pass type I membrane protein 1 CTH
Secreted 1 PLOD3
extracellular region 2 LYZ, MBP
mitochondrial outer membrane 1 TSPO
Z disc 1 RYR1
sarcoplasmic reticulum 1 RYR1
collagen-containing extracellular matrix 2 MBP, PLOD3
cell periphery 1 MBP
[Isoform 3]: Nucleus 1 MBP
Secreted, extracellular space 1 PLOD3
organelle membrane 1 RYR1
I band 1 RYR1
myelin sheath 1 MBP
ficolin-1-rich granule lumen 1 MBP
endoplasmic reticulum lumen 1 PLOD3
specific granule lumen 1 LYZ
tertiary granule lumen 1 LYZ
transport vesicle 1 MBP
rough endoplasmic reticulum membrane 2 PLOD1, PLOD2
azurophil granule lumen 1 LYZ
Sarcoplasmic reticulum membrane 1 RYR1
calcium channel complex 1 RYR1
junctional sarcoplasmic reticulum membrane 1 RYR1
Rough endoplasmic reticulum 2 PLOD2, PLOD3
terminal cisterna 1 RYR1
compact myelin 1 MBP
internode region of axon 1 MBP
catalytic complex 1 PLOD1
[Bone marrow proteoglycan]: Secreted 1 MBP
ryanodine receptor complex 1 RYR1
Myelin membrane 1 MBP


文献列表

  • A Srinivas, K Rahul, E V V Ramaprasad, Ch Sasikala, Ch V Ramana. Rhodovulum bhavnagarense sp. nov., a phototrophic alphaproteobacterium isolated from a pink pond. International journal of systematic and evolutionary microbiology. 2012 Oct; 62(Pt 10):2528-2532. doi: 10.1099/ijs.0.036152-0. [PMID: 22180610]
  • S Kalyan Chakravarthy, K Sucharitha, Ch Sasikala, Ch V Ramana. Rhodovulum lacipunicei sp. nov., an obligate sulfide-demanding phototrophic alphaproteobacterium isolated from a purple pond in India. International journal of systematic and evolutionary microbiology. 2009 Jul; 59(Pt 7):1615-9. doi: 10.1099/ijs.0.007617-0. [PMID: 19542142]
  • Michael Wormit, Philipp H P Harbach, Jan M Mewes, Sergiu Amarie, Josef Wachtveitl, Andreas Dreuw. Excitation energy transfer and carotenoid radical cation formation in light harvesting complexes - a theoretical perspective. Biochimica et biophysica acta. 2009 Jun; 1787(6):738-46. doi: 10.1016/j.bbabio.2009.01.021. [PMID: 19366605]
  • V Venkata Ramana, P Anil Kumar, T N R Srinivas, Ch Sasikala, Ch V Ramana. Rhodobacter aestuarii sp. nov., a phototrophic alphaproteobacterium isolated from an estuarine environment. International journal of systematic and evolutionary microbiology. 2009 May; 59(Pt 5):1133-6. doi: 10.1099/ijs.0.004507-0. [PMID: 19406806]
  • T N R Srinivas, P Anil Kumar, Ch Sasikala, Ch V Ramana, J F Imhoff. Rhodobacter vinaykumarii sp. nov., a marine phototrophic alphaproteobacterium from tidal waters, and emended description of the genus Rhodobacter. International journal of systematic and evolutionary microbiology. 2007 Sep; 57(Pt 9):1984-1987. doi: 10.1099/ijs.0.65077-0. [PMID: 17766859]
  • T N R Srinivas, P Anil Kumar, Ch Sasikala, Ch V Ramana. Rhodovulum imhoffii sp. nov. International journal of systematic and evolutionary microbiology. 2007 Feb; 57(Pt 2):228-232. doi: 10.1099/ijs.0.64470-0. [PMID: 17267955]
  • T N R Srinivas, P Anil Kumar, Ch Sasikala, Ch V Ramana, J Süling, J F Imhoff. Rhodovulum marinum sp. nov., a novel phototrophic purple non-sulfur alphaproteobacterium from marine tides of Visakhapatnam, India. International journal of systematic and evolutionary microbiology. 2006 Jul; 56(Pt 7):1651-1656. doi: 10.1099/ijs.0.64005-0. [PMID: 16825644]
  • Ronald Steffen, Hann-Jörg Eckert, Amélie A Kelly, Peter Dörmann, Gernot Renger. Investigations on the reaction pattern of photosystem II in leaves from Arabidopsis thaliana by time-resolved fluorometric analysis. Biochemistry. 2005 Mar; 44(9):3123-33. doi: 10.1021/bi0484668. [PMID: 15736922]
  • Liu Yuan, Zhang Wei, Wu Yongqiang, Xu Chunhe. Acquirement and characterization of a carotenoid mutant (GM309) of Rhodobacter sphaeroides 601. Science in China. Series C, Life sciences. 2004 Feb; 47(1):52-8. doi: 10.1360/02yc0254. [PMID: 15382676]
  • J Harada, K V Nagashima, S Takaichi, N Misawa, K Matsuura, K Shimada. Phytoene desaturase, CrtI, of the purple photosynthetic bacterium, Rubrivivax gelatinosus, produces both neurosporene and lycopene. Plant & cell physiology. 2001 Oct; 42(10):1112-8. doi: 10.1093/pcp/pce140. [PMID: 11673627]