(R)-2-Benzylsuccinate (BioDeep_00000003217)

 

Secondary id: BioDeep_00001869505

human metabolite Endogenous


代谢物信息卡片


(R)-2-AMINO-BUT-3-EN-1-OLHYDROCHLORIDE

化学式: C11H12O4 (208.0736)
中文名称: (R)-2-苄基琥珀酸, DL-苄基丁二酸 2级, DL-苄基丁二酸, 2-苄基琥珀酸
谱图信息: 最多检出来源 Homo sapiens(blood) 19.04%

分子结构信息

SMILES: C1=CC=C(C=C1)CC(CC(=O)O)C(=O)O
InChI: InChI=1S/C11H12O4/c12-10(13)7-9(11(14)15)6-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,12,13)(H,14,15)

描述信息

(R)-2-Benzylsuccinate is an aromatic compounds that is an intermediate in Benzoate degradation via CoA ligation. Biodegradation of aromatic compounds is a common process in anoxic environments. The many natural and synthetic aromatic compounds found in the environment are usually degraded by anaerobic microorganisms into only few central intermediates, prior to ring cleavage. Benzoyl-CoA is the most important of these intermediates since a large number of compounds, including chloro-, nitro-, and aminobenzoates, aromatic hydrocarbons, and phenolic compounds, are initially converted to benzoyl-CoA prior to ring reduction and cleavage. (R)-2-Benzylsuccinate can be generated from toluene via the enzyme benzylsuccinate synthase (EC 4.1.99.11). It is then converted to Benzylsuccinyl-CoA via the enzyme benzylsuccinate CoA-transferase BbsE subunit (EC 2.8.3.15). [HMDB]
(R)-2-Benzylsuccinate is an aromatic compounds that is an intermediate in Benzoate degradation via CoA ligation. Biodegradation of aromatic compounds is a common process in anoxic environments. The many natural and synthetic aromatic compounds found in the environment are usually degraded by anaerobic microorganisms into only few central intermediates, prior to ring cleavage. Benzoyl-CoA is the most important of these intermediates since a large number of compounds, including chloro-, nitro-, and aminobenzoates, aromatic hydrocarbons, and phenolic compounds, are initially converted to benzoyl-CoA prior to ring reduction and cleavage. (R)-2-Benzylsuccinate can be generated from toluene via the enzyme benzylsuccinate synthase (EC 4.1.99.11). It is then converted to Benzylsuccinyl-CoA via the enzyme benzylsuccinate CoA-transferase BbsE subunit (EC 2.8.3.15).
KEIO_ID B005

同义名列表

14 个代谢物同义名

(R)-2-AMINO-BUT-3-EN-1-OLHYDROCHLORIDE; (2S)-2-benzylbutanedioic acid; (2R)-2-Benzylsuccinic acid; (R)-2-Benzylsuccinic acid; (2S)-2-Benzylbutanedioate; DL-benzylsuccinic acid; 2-Benzylsuccinic acid; L-Benzylsuccinic acid; (R)-2-Benzylsuccinate; Benzyl succinic acid; L-Benzylsuccinate; Benzyl succinate; Benzylsuccinate; 2-Benzylsuccinic acid



数据库引用编号

27 个数据库交叉引用编号

分类词条

相关代谢途径

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BioCyc(0)

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代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 4 ACE, POMC, SMCP, TUBB4B
Peripheral membrane protein 1 SMCP
Mitochondrion membrane 1 SMCP
Nucleus 1 TUBB4B
cytosol 1 TUBB4B
dendrite 1 PDYN
mitochondrial membrane 1 SMCP
Cell membrane 1 ACE
Cytoplasmic side 1 SMCP
Multi-pass membrane protein 1 KCNA3
Synapse 1 PDYN
glutamatergic synapse 1 KCNA3
lysosomal membrane 1 GAA
neuronal cell body 1 PDYN
presynaptic membrane 1 KCNA3
Lysosome 2 ACE, GAA
endosome 1 ACE
plasma membrane 4 ACE, GAA, KCNA3, PDYN
Membrane 3 ACE, GAA, KCNA3
axon 1 KCNA3
extracellular exosome 4 ACE, CPVL, GAA, TUBB4B
Lysosome membrane 1 GAA
extracellular space 4 ACE, CELA3B, CPA1, POMC
lysosomal lumen 1 GAA
perinuclear region of cytoplasm 1 KCNA3
mitochondrion 1 SMCP
intracellular membrane-bounded organelle 1 GAA
Single-pass type I membrane protein 1 ACE
Secreted 5 ACE, CPA1, GAA, PDYN, POMC
extracellular region 5 ACE, GAA, PDYN, POMC, TUBB4B
hippocampal mossy fiber to CA3 synapse 1 PDYN
external side of plasma membrane 1 ACE
Extracellular vesicle 1 TUBB4B
microtubule cytoskeleton 1 TUBB4B
postsynaptic membrane 1 KCNA3
Membrane raft 1 KCNA3
Cytoplasm, cytoskeleton 1 TUBB4B
microtubule 1 TUBB4B
secretory granule 1 POMC
mitotic spindle 1 TUBB4B
cytoskeleton 1 TUBB4B
brush border membrane 1 ACE
sperm midpiece 1 ACE
[Isoform 2]: Cell membrane 1 KCNA3
intercellular bridge 1 TUBB4B
Cytoplasm, cytoskeleton, flagellum axoneme 1 TUBB4B
sperm flagellum 1 TUBB4B
axonemal microtubule 1 TUBB4B
tertiary granule membrane 1 GAA
basal plasma membrane 1 ACE
voltage-gated potassium channel complex 1 KCNA3
secretory granule lumen 1 POMC
axon terminus 1 PDYN
azurophil granule membrane 1 GAA
azurophil granule lumen 1 TUBB4B
neuronal dense core vesicle 1 PDYN
calyx of Held 1 KCNA3
ficolin-1-rich granule membrane 1 GAA
[Isoform 1]: Cell membrane 1 KCNA3
autolysosome lumen 1 GAA
[Angiotensin-converting enzyme, soluble form]: Secreted 1 ACE
[Isoform Testis-specific]: Cell membrane 1 ACE
[Isoform 3]: Cytoplasm, perinuclear region 1 KCNA3


文献列表

  • Shinji Matsugi, Takatoshi Hamada, Noriko Shioi, Takumi Tanaka, Takashi Kumada, Shinji Satomura. Serum carboxypeptidase A activity as a biomarker for early-stage pancreatic carcinoma. Clinica chimica acta; international journal of clinical chemistry. 2007 Mar; 378(1-2):147-53. doi: 10.1016/j.cca.2006.11.010. [PMID: 17222396]
  • Barbara Morasch, Bernhard Schink, Christoph C Tebbe, Rainer U Meckenstock. Degradation of o-xylene and m-xylene by a novel sulfate-reducer belonging to the genus Desulfotomaculum. Archives of microbiology. 2004 Jun; 181(6):407-17. doi: 10.1007/s00203-004-0672-6. [PMID: 15127183]
  • D R Abendschein, H Serota, T H Plummer, K Amiraian, A W Strauss, B E Sobel, A S Jaffe. Conversion of MM creatine kinase isoforms in human plasma by carboxypeptidase N. The Journal of laboratory and clinical medicine. 1987 Dec; 110(6):798-806. doi: . [PMID: 3681119]
  • M Yamada, J Takahashi. Effect of dietary DL-ethionine on postnatal growth, and activities of liver and kidney enzymes of male chickens, Gallus domesticus. Comparative biochemistry and physiology. C: Comparative pharmacology. 1977; 58(2C):177-81. doi: 10.1016/0306-4492(77)90101-0. [PMID: 23931]
  • N Longrigg. In vitro studies on smooth muscle of the human renal pelvis. European journal of pharmacology. 1975 Dec; 34(2):293-8. doi: 10.1016/0014-2999(75)90254-x. [PMID: 11103]