Rhodoviolascin (BioDeep_00000004127)

   


代谢物信息卡片


3,3,4,4-Tetradehydro-1,1,2,2-tetrahydro-1,1-dimethoxy-psi,psi-carotene

化学式: C42H60O2 (596.4593)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(plant) 4.35%

分子结构信息

SMILES: C(=C\C=C(\C=C\CC(C)(OC)C)/C)/C(=C/C=C/C(=C/C=C/C=C(/C=C\C=C(\C=C\C=C(\C=C\CC(C)(OC)C)/C)/C)\C)/C)/C
InChI: InChI=1S/C42H60O2/c1-35(23-15-25-37(3)27-17-29-39(5)31-19-33-41(7,8)43-11)21-13-14-22-36(2)24-16-26-38(4)28-18-30-40(6)32-20-34-42(9,10)44-12/h13-32H,33-34H2,1-12H3/b14-13+,23-15+,24-16+,27-17+,28-18+,31-19+,32-20+,35-21+,36-22+,37-25+,38-26+,39-29+,40-30+

描述信息

A carotenoid ether that is (3E,3E)-1,1-dihydroxy-3,3,4,4-tetradehydro-1,1,2,2-tetrahydro-psi,psi-carotene in which both hydroxyl hydrogens are replaced by methyl groups.
D020011 - Protective Agents > D000975 - Antioxidants > D002338 - Carotenoids

同义名列表

5 个代谢物同义名

3,3,4,4-Tetradehydro-1,1,2,2-tetrahydro-1,1-dimethoxy-psi,psi-carotene; Spirilloxanthin; Rhodoviolascin; NCI60_011309; Spirilloxanthin



数据库引用编号

13 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(1)

PlantCyc(0)

代谢反应

1 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(1)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

10 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 1 CAT
Peripheral membrane protein 3 MBP, PLOD2, PLOD3
Endoplasmic reticulum membrane 3 PLOD1, PLOD2, PLOD3
Nucleus 2 MBP, PRM1
cytosol 4 CAT, CEP131, MBP, PRM1
dendrite 1 ADORA1
trans-Golgi network 1 PLOD3
centrosome 1 CEP131
nucleoplasm 2 CEP131, PRM1
Cell membrane 1 ADORA1
Cytoplasmic side 1 MBP
Multi-pass membrane protein 2 ADORA1, RHO
Synapse 2 ADORA1, MBP
cell surface 1 MBP
Golgi apparatus 2 PLOD3, RHO
Golgi membrane 1 RHO
neuronal cell body 2 ADORA1, MBP
presynaptic membrane 1 ADORA1
acrosomal vesicle 1 CEP131
plasma membrane 3 ADORA1, MBP, RHO
presynaptic active zone 1 ADORA1
terminal bouton 1 ADORA1
Membrane 2 CAT, RHO
basolateral plasma membrane 1 ADORA1
extracellular exosome 5 CAT, MBP, PLOD1, PLOD2, PLOD3
Lumenal side 2 PLOD2, PLOD3
endoplasmic reticulum 3 PLOD1, PLOD2, PLOD3
extracellular space 1 PLOD3
mitochondrion 1 CAT
protein-containing complex 2 CAT, MBP
intracellular membrane-bounded organelle 1 CAT
Secreted 1 PLOD3
extracellular region 2 CAT, MBP
mitochondrial matrix 1 CAT
centriolar satellite 1 CEP131
ciliary membrane 1 RHO
photoreceptor inner segment 1 RHO
photoreceptor outer segment 1 RHO
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome 1 CEP131
nuclear membrane 1 CEP131
dendritic spine 1 ADORA1
cell-cell junction 1 RHO
postsynaptic membrane 1 ADORA1
focal adhesion 1 CAT
axolemma 1 ADORA1
Peroxisome 1 CAT
Peroxisome matrix 1 CAT
peroxisomal matrix 1 CAT
peroxisomal membrane 1 CAT
collagen-containing extracellular matrix 2 MBP, PLOD3
ciliary basal body 1 CEP131
cilium 1 CEP131
cell periphery 1 MBP
Chromosome 1 PRM1
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole 1 CEP131
[Isoform 3]: Nucleus 1 MBP
centriole 1 CEP131
ciliary transition zone 1 CEP131
Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite 1 CEP131
Cell projection, cilium, photoreceptor outer segment 1 RHO
Secreted, extracellular space 1 PLOD3
Cytoplasmic vesicle, secretory vesicle, acrosome 1 CEP131
sperm midpiece 1 RHO
Golgi-associated vesicle membrane 1 RHO
myelin sheath 1 MBP
ficolin-1-rich granule lumen 2 CAT, MBP
secretory granule lumen 1 CAT
endoplasmic reticulum lumen 1 PLOD3
Photoreceptor inner segment membrane 1 RHO
transport vesicle 1 MBP
rough endoplasmic reticulum membrane 2 PLOD1, PLOD2
calyx of Held 1 ADORA1
nucleosome 1 PRM1
photoreceptor outer segment membrane 1 RHO
sperm head plasma membrane 1 RHO
Rough endoplasmic reticulum 2 PLOD2, PLOD3
manchette 1 CEP131
photoreceptor disc membrane 1 RHO
compact myelin 1 MBP
internode region of axon 1 MBP
catalase complex 1 CAT
catalytic complex 1 PLOD1
rod photoreceptor outer segment 1 RHO
asymmetric synapse 1 ADORA1
sperm head-tail coupling apparatus 1 CEP131
[Bone marrow proteoglycan]: Secreted 1 MBP
Myelin membrane 1 MBP


文献列表

  • Sailaja Buddhi, Suresh G, Deepshikha Gupta, Sasikala Ch, Ramana Ch V. Afifella aestuarii sp. nov., a phototrophic bacterium. International journal of systematic and evolutionary microbiology. 2020 Jan; 70(1):327-333. doi: 10.1099/ijsem.0.003756. [PMID: 31592760]
  • E V V Ramaprasad, Ch Sasikala, Ch V Ramana. Roseomonas oryzae sp. nov., isolated from paddy rhizosphere soil. International journal of systematic and evolutionary microbiology. 2015 Oct; 65(10):3535-3540. doi: 10.1099/ijsem.0.000449. [PMID: 26297330]
  • V Venkata Ramana, S Kalyana Chakravarthy, P Shalem Raj, B Vinay Kumar, E Shobha, E V V Ramaprasad, Ch Sasikala, Ch V Ramana. Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris. International journal of systematic and evolutionary microbiology. 2012 Aug; 62(Pt 8):1790-1798. doi: 10.1099/ijs.0.026815-0. [PMID: 21986724]
  • Mujahid Mohammed, Arvind Isukapatla, Lakshmi Prasuna Mekala, Rama Prasad Eedara Veera Venkata, Sasikala Chintalapati, Venkata Ramana Chintalapati. Genome sequence of the phototrophic betaproteobacterium Rubrivivax benzoatilyticus strain JA2T. Journal of bacteriology. 2011 Jun; 193(11):2898-9. doi: 10.1128/jb.00379-11. [PMID: 21478355]
  • Michael Wormit, Philipp H P Harbach, Jan M Mewes, Sergiu Amarie, Josef Wachtveitl, Andreas Dreuw. Excitation energy transfer and carotenoid radical cation formation in light harvesting complexes - a theoretical perspective. Biochimica et biophysica acta. 2009 Jun; 1787(6):738-46. doi: 10.1016/j.bbabio.2009.01.021. [PMID: 19366605]
  • V Venkata Ramana, P Anil Kumar, T N R Srinivas, Ch Sasikala, Ch V Ramana. Rhodobacter aestuarii sp. nov., a phototrophic alphaproteobacterium isolated from an estuarine environment. International journal of systematic and evolutionary microbiology. 2009 May; 59(Pt 5):1133-6. doi: 10.1099/ijs.0.004507-0. [PMID: 19406806]
  • P Anil Kumar, T S Sasi Jyothsna, T N R Srinivas, Ch Sasikala, Ch V Ramana, J F Imhoff. Two novel species of marine phototrophic Gammaproteobacteria: Thiorhodococcus bheemlicus sp. nov. and Thiorhodococcus kakinadensis sp. nov. International journal of systematic and evolutionary microbiology. 2007 Nov; 57(Pt 11):2458-2461. doi: 10.1099/ijs.0.64880-0. [PMID: 17978199]
  • P Anil Kumar, T S Sasi Jyothsna, T N R Srinivas, Ch Sasikala, Ch V Ramana, J F Imhoff. Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond. International journal of systematic and evolutionary microbiology. 2007 Jun; 57(Pt 6):1261-1265. doi: 10.1099/ijs.0.64753-0. [PMID: 17551040]
  • T N R Srinivas, P Anil Kumar, Ch Sasikala, Ch V Ramana, J F Imhoff. Rhodobium gokarnense sp. nov., a novel phototrophic alphaproteobacterium from a saltern. International journal of systematic and evolutionary microbiology. 2007 May; 57(Pt 5):932-935. doi: 10.1099/ijs.0.64843-0. [PMID: 17473235]
  • Ch V Ramana, Ch Sasikala, K Arunasri, P Anil Kumar, T N R Srinivas, S Shivaji, P Gupta, J Süling, J F Imhoff. Rubrivivax benzoatilyticus sp. nov., an aromatic, hydrocarbon-degrading purple betaproteobacterium. International journal of systematic and evolutionary microbiology. 2006 Sep; 56(Pt 9):2157-2164. doi: 10.1099/ijs.0.64209-0. [PMID: 16957114]
  • K Arunasri, C Sasikala, C V Ramana, J Süling, J F Imhoff. Marichromatium indicum sp. nov., a novel purple sulfur gammaproteobacterium from mangrove soil of Goa, India. International journal of systematic and evolutionary microbiology. 2005 Mar; 55(Pt 2):673-679. doi: 10.1099/ijs.0.02892-0. [PMID: 15774642]
  • Demin Zhang, Huifang Yang, Zhiyong Huang, Wei Zhang, Shuang-Jiang Liu. Rhodopseudomonas faecalis sp. nov., a phototrophic bacterium isolated from an anaerobic reactor that digests chicken faeces. International journal of systematic and evolutionary microbiology. 2002 Nov; 52(Pt 6):2055-2060. doi: 10.1099/00207713-52-6-2055. [PMID: 12508868]
  • Marcela S Montecchia, Norma L Kerber, Norma L Pucheu, Alejandro Perticari, Augusto F García. Analysis of genomic diversity among photosynthetic stem-nodulating rhizobial strains from northeast Argentina. Systematic and applied microbiology. 2002 Oct; 25(3):423-33. doi: 10.1078/0723-2020-00123. [PMID: 12421080]
  • S Takaichi, T Maoka, M Yamada, K Matsuura, Y Haikawa, S Hanada. Absence of carotenes and presence of a tertiary methoxy group in a carotenoid from a thermophilic filamentous photosynthetic bacterium Roseiflexus castenholzii. Plant & cell physiology. 2001 Dec; 42(12):1355-62. doi: 10.1093/pcp/pce172. [PMID: 11773528]
  • J Harada, K V Nagashima, S Takaichi, N Misawa, K Matsuura, K Shimada. Phytoene desaturase, CrtI, of the purple photosynthetic bacterium, Rubrivivax gelatinosus, produces both neurosporene and lycopene. Plant & cell physiology. 2001 Oct; 42(10):1112-8. doi: 10.1093/pcp/pce140. [PMID: 11673627]
  • T W GOODWIN, H G OSMAN. Studies in carotenogenesis. 9. General cultural conditions controlling carotenoid (spirilloxanthin) synthesis in the photosynthetic bacterium Rhodospirillum rubrum. The Biochemical journal. 1953 Mar; 53(4):541-6. doi: 10.1042/bj0530541. [PMID: 13032107]