4-Methylvaleric acid (BioDeep_00000408617)

Main id: BioDeep_00000003405

Secondary id: BioDeep_00000405336, BioDeep_00000598660, BioDeep_00001867904

PANOMIX_OTCML-2023 natural product


代谢物信息卡片


4-METHYLPENTANOIC ACID

化学式: C6H12O2 (116.0837)
中文名称: 4-甲基戊酸
谱图信息: 最多检出来源 Viridiplantae(plant) 16.73%

分子结构信息

SMILES: CC(C)CCC(=O)O
InChI: InChI=1S/C6H12O2/c1-5(2)3-4-6(7)8/h5H,3-4H2,1-2H3,(H,7,8)

描述信息

CONFIDENCE standard compound; INTERNAL_ID 154
4-Methylpentanoic acid (Isocaproic Acid) is a Short chain fatty acid (SCFA)[1].

同义名列表

4 个代谢物同义名

4-Methylvaleric acid; 4-METHYLPENTANOIC ACID; Isocaproic acid; 4-Methylpentanoic acid



数据库引用编号

17 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

25 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 5 EDN1, LDHA, NEU4, SEMA6D, TBX5
Endoplasmic reticulum membrane 2 CD4, NEU4
Mitochondrion membrane 1 NEU4
Nucleus 3 LDHA, TBX5, ZNF134
cytosol 2 LDHA, LEP
nucleoplasm 2 TBX5, ZNF134
Cell membrane 6 CD19, CD4, CD8A, OR51E1, SLC1A5, TNF
Multi-pass membrane protein 3 OR51E1, SLC1A5, SLC5A8
cell surface 2 SEMA6D, TNF
Golgi apparatus 1 SEMA6D
Golgi membrane 1 INS
mitochondrial inner membrane 1 NEU4
neuronal cell body 1 TNF
Lysosome 1 NEU4
plasma membrane 12 CD19, CD4, CD8A, GCG, IGHE, NEU4, OR11H7, OR51E1, SEMA6D, SLC1A5, SLC5A8, TNF
Membrane 6 CD19, LDHA, NEU4, OR51E1, SEMA6D, SLC1A5
apical plasma membrane 1 SLC5A8
extracellular exosome 4 CD19, LDHA, SLC1A5, SLC5A8
extracellular space 8 EDN1, GCG, IGHE, IL10, IL6, INS, LEP, TNF
lysosomal lumen 1 NEU4
mitochondrion 1 LDHA
protein-containing complex 2 CD19, TBX5
Microsome membrane 1 NEU4
Single-pass type I membrane protein 4 CD19, CD4, CD8A, IGHE
Secreted 6 EDN1, GCG, IL10, IL6, INS, LEP
extracellular region 9 CD8A, EDN1, GCG, IGHE, IL10, IL6, INS, LEP, TNF
Mitochondrion outer membrane 1 NEU4
mitochondrial outer membrane 1 NEU4
basal part of cell 1 EDN1
[Isoform 2]: Secreted 1 CD8A
transcription regulator complex 1 TBX5
external side of plasma membrane 4 CD19, CD4, CD8A, TNF
Early endosome 1 CD4
recycling endosome 1 TNF
Single-pass type II membrane protein 1 TNF
Apical cell membrane 1 SLC5A8
Membrane raft 3 CD19, CD4, TNF
receptor complex 1 CD8A
Cell projection, neuron projection 1 NEU4
neuron projection 1 NEU4
chromatin 1 TBX5
IgE immunoglobulin complex 1 IGHE
phagocytic cup 1 TNF
[Isoform 2]: Cell membrane 1 IGHE
endosome lumen 1 INS
Melanosome 1 SLC1A5
basal plasma membrane 1 SLC1A5
plasma membrane raft 1 CD8A
secretory granule lumen 2 GCG, INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 4 CD4, GCG, IL6, INS
transport vesicle 2 EDN1, INS
Lysosome lumen 1 NEU4
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
clathrin-coated endocytic vesicle membrane 1 CD4
protein-DNA complex 1 TBX5
[Isoform 1]: Cell membrane 2 CD8A, NEU4
[Isoform 3]: Cell membrane 1 IGHE
oxidoreductase complex 1 LDHA
[Glucagon-like peptide 1]: Secreted 1 GCG
[Tumor necrosis factor, soluble form]: Secreted 1 TNF
T cell receptor complex 2 CD4, CD8A
[Isoform 1]: Secreted 1 IGHE
IgE B cell receptor complex 1 IGHE
immunoglobulin complex, circulating 1 IGHE
rough endoplasmic reticulum lumen 1 EDN1
Weibel-Palade body 1 EDN1
interleukin-6 receptor complex 1 IL6
[Isoform 2]: Mitochondrion inner membrane 1 NEU4
GINS complex 1 SLC5A8
[C-domain 2]: Secreted 1 TNF
[Tumor necrosis factor, membrane form]: Membrane 1 TNF
[C-domain 1]: Secreted 1 TNF
organelle inner membrane 1 NEU4


文献列表

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