Cylindrin (BioDeep_00000000659)

   

PANOMIX_OTCML-2023 natural product


代谢物信息卡片


(3S,3aS,5aS,5bS,7aR,9S,11aS,13aR,13bS)-9-methoxy-3a,5a,8,8,11a,13a-hexamethyl-3-propan-2-yl-1,2,3,4,5,5b,6,7,7a,9,10,11,13,13b-tetradecahydrocyclopenta[a]chrysene

化学式: C31H52O (440.4018)
中文名称: 白茅素
谱图信息: 最多检出来源 Chinese Herbal Medicine(otcml) 95.35%

分子结构信息

SMILES: CC(C)C1CCC2C1(CCC3(C2(CC=C4C3CCC5C4(CCC(C5(C)C)OC)C)C)C)C
InChI: InChI=1S/C31H52O/c1-20(2)21-10-13-25-29(21,6)18-19-30(7)23-11-12-24-27(3,4)26(32-9)15-16-28(24,5)22(23)14-17-31(25,30)8/h14,20-21,23-26H,10-13,15-19H2,1-9H3

描述信息

Cylindrin is a triterpenoid.
Cylindrin is a natural product found in Diospyros nigra, Diospyros blancoi, and other organisms with data available.
Cylindrin is a member of the class of compounds known as triterpenoids. Triterpenoids are terpene molecules containing six isoprene units. Cylindrin is practically insoluble (in water) and an extremely weak basic (essentially neutral) compound (based on its pKa). Cylindrin can be found in rice, which makes cylindrin a potential biomarker for the consumption of this food product.

同义名列表

5 个代谢物同义名

(3S,3aS,5aS,5bS,7aR,9S,11aS,13aR,13bS)-9-methoxy-3a,5a,8,8,11a,13a-hexamethyl-3-propan-2-yl-1,2,3,4,5,5b,6,7,7a,9,10,11,13,13b-tetradecahydrocyclopenta[a]chrysene; 9-Methoxy-3a,5a,8,8,11a,13a-hexamethyl-3-(propan-2-yl)-2,3,3a,4,5,5a,5b,6,7,7a,8,9,10,11,11a,13,13a,13b-octadecahydro-1H-cyclopenta[a]chrysene; D:C-Friedo-B:A-neogammacer-9(11)-ene, 3-methoxy-, (3beta,8beta,13beta,14alpha,17beta,18alpha,21beta)-; hollow cylinder protein complex; Cylindrin



数据库引用编号

12 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

34 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:

  • PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 3 CALCA, PIK3CA, TARDBP
Nucleus 1 TARDBP
cytosol 1 PIK3CA
nucleoplasm 2 ATP2B1, TARDBP
Cell membrane 1 ATP2B1
lamellipodium 1 PIK3CA
Multi-pass membrane protein 1 ATP2B1
Synapse 2 ATP2B1, TAC1
glutamatergic synapse 1 ATP2B1
Golgi membrane 1 INS
neuronal cell body 3 CALCA, IAPP, TAC1
presynaptic membrane 1 ATP2B1
plasma membrane 2 ATP2B1, PIK3CA
synaptic vesicle membrane 1 ATP2B1
terminal bouton 1 CALCA
Membrane 1 ATP2B1
axon 1 TAC1
basolateral plasma membrane 1 ATP2B1
extracellular exosome 2 ATP2B1, TTR
extracellular space 7 CALCA, IAPP, IL4, INS, TAC1, TAC3, TTR
perinuclear region of cytoplasm 1 PIK3CA
intercalated disc 1 PIK3CA
mitochondrion 1 TARDBP
intracellular membrane-bounded organelle 1 ATP2B1
Secreted 5 CALCA, IAPP, IL4, INS, TTR
extracellular region 7 CALCA, IAPP, IL4, INS, TAC1, TAC3, TTR
hippocampal mossy fiber to CA3 synapse 1 CALCA
Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane 1 ATP2B1
lateral plasma membrane 1 ATP2B1
nuclear speck 1 TARDBP
chromatin 1 TARDBP
cell projection 1 ATP2B1
Basolateral cell membrane 1 ATP2B1
endosome lumen 1 INS
Cytoplasm, Stress granule 1 TARDBP
cytoplasmic stress granule 1 TARDBP
Presynaptic cell membrane 1 ATP2B1
secretory granule lumen 1 INS
Golgi lumen 1 INS
endoplasmic reticulum lumen 1 INS
phosphatidylinositol 3-kinase complex 1 PIK3CA
phosphatidylinositol 3-kinase complex, class IA 1 PIK3CA
transport vesicle 1 INS
azurophil granule lumen 1 TTR
Endoplasmic reticulum-Golgi intermediate compartment membrane 1 INS
immunological synapse 1 ATP2B1
neuronal dense core vesicle 1 CALCA
perichromatin fibrils 1 TARDBP
intracellular non-membrane-bounded organelle 1 TARDBP
photoreceptor ribbon synapse 1 ATP2B1
phosphatidylinositol 3-kinase complex, class IB 1 PIK3CA
interchromatin granule 1 TARDBP


文献列表

  • Xiaoyu Li, Xin Huang, Yongmin Feng, Yaqing Wang, Jibin Guan, Botian Deng, Qiuping Chen, Yanjing Wang, Yongming Chen, Jiahe Wang, Joe Yeong, Junfeng Hao. Cylindrin from Imperata cylindrica inhibits M2 macrophage formation and attenuates renal fibrosis by downregulating the LXR-α/PI3K/AKT pathway. European journal of pharmacology. 2023 May; 950(?):175771. doi: 10.1016/j.ejphar.2023.175771. [PMID: 37146709]
  • Thanh D Do, Nichole E LaPointe, Rebecca Nelson, Pascal Krotee, Eric Y Hayden, Brittany Ulrich, Sarah Quan, Stuart C Feinstein, David B Teplow, David Eisenberg, Joan-Emma Shea, Michael T Bowers. Amyloid β-Protein C-Terminal Fragments: Formation of Cylindrins and β-Barrels. Journal of the American Chemical Society. 2016 Jan; 138(2):549-57. doi: 10.1021/jacs.5b09536. [PMID: 26700445]